FFCP PHASE1:Hg19::chr1:236687232..236687329,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3964|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6569|TSSclassifier=S|UniProt=E9PN19,C9JNF5,F6V2D4,E9PPM4,E9PNC2|association_with_transcript=0bp_to_ENST00000323938,ENST00000356238,ENST00000366583,ENST00000416919,ENST00000434231,ENST00000442397,ENST00000475670,ENST00000528782,ENST00000532826_5end|description=CAGE_peak_1_at_LGALS8_5end|id=chr1:236687232..236687329,+|ontology_enrichment_celltype=CL:0000766!3.74e-26!76;CL:0000839!2.02e-24!70;CL:0000557!2.40e-22!71;CL:0002057!7.96e-21!42;CL:0002194!3.26e-20!63;CL:0000576!3.26e-20!63;CL:0000040!3.26e-20!63;CL:0000559!3.26e-20!63;CL:0002009!3.33e-20!65;CL:0000738!6.26e-19!140;CL:0000763!1.74e-18!112;CL:0000049!1.74e-18!112;CL:0002031!1.74e-18!124;CL:0000037!1.12e-16!172;CL:0000566!1.12e-16!172;CL:0000860!1.16e-16!45;CL:0002032!8.98e-16!165;CL:0000837!8.98e-16!165;CL:0002087!1.28e-15!119;CL:0000988!4.27e-15!182;CL:0000134!3.71e-07!358|ontology_enrichment_celltype_v019=CL:0000473;4.73e-17;39!CL:0000234;4.73e-17;39!CL:0000860;5.36e-17;33!CL:0002057;5.36e-17;33!CL:0000576;1.20e-15;48!CL:0000766;3.31e-14;69!CL:0000763;7.54e-08;100|ontology_enrichment_celltype_v019_2=CL:0000766,1.69e-30,72;CL:0000839,8.14e-29,66;CL:0000557,1.91e-26,67;CL:0002194,2.24e-24,59;CL:0000576,2.24e-24,59;CL:0000040,2.24e-24,59;CL:0000559,2.24e-24,59;CL:0002009,2.82e-24,61;CL:0000473,4.93e-24,48;CL:0000234,4.93e-24,48;CL:0000738,2.60e-21,136;CL:0000763,3.57e-21,108;CL:0000049,3.57e-21,108;CL:0002031,5.23e-21,120;CL:0000860,7.96e-21,42;CL:0002057,7.96e-21,42;CL:0000037,1.22e-18,168;CL:0002087,6.05e-18,115;CL:0002032,1.04e-17,161;CL:0000837,1.04e-17,161;CL:0000988,2.62e-17,177;CL:0000134,3.55e-08,354;CL:0002320,1.52e-07,361|ontology_enrichment_development_v019=CL:0002057;2.56e-15;42!CL:0000049;3.70e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.11e-23!112;UBERON:0002390!5.95e-23!102;UBERON:0003061!5.95e-23!102;UBERON:0002371!9.08e-18!80;UBERON:0001474!2.00e-15!86;UBERON:0002405!3.03e-15!115;UBERON:0004765!5.73e-14!101;UBERON:0001434!5.73e-14!101|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.58e-26,108;UBERON:0002390,3.15e-26,98;UBERON:0003061,3.15e-26,98;UBERON:0002405,9.01e-22,93;UBERON:0002371,5.13e-21,76;UBERON:0001474,2.99e-18,82;UBERON:0004765,6.98e-18,90;UBERON:0001434,7.96e-16,100|phase1_expression=50.5065894372147,43.4624063498696,78.088739869168,29.0212565224078,41.1204206873105,50.5956343978214,32.9289841618804,39.7983520258904,17.4994370893892,11.7952289520724,7.6758128476967,9.82986174585775,7.91300934685361,47.2787468307378,25.5175979310495,45.0457848122689,33.7508935693427,31.403333886657,31.2276991225924,9.84968464614303,8.16002764977012,5.01527554364941,18.0328671892566,17.5199264093292,12.5542639594803,45.6952166372749,37.4378687891753,40.6934739391722,58.2179129736378,102.866278690053,70.2865199854985,19.3078457140575,10.843413076017,22.554994620174,0,0,37.8744566741953,70.9114122920803,80.4183234355268,59.6779894468593,92.9249218095686,100.730930131903,99.1665935391618,77.9334559858467,109.961899613444,73.9881386622839,74.6097208467248,90.8681032528235,86.717783850629,241.086224765962,228.751510930487,265.80602639477,135.140306848754,134.260814185436,139.489281192172,80.5677213242348,101.793993971576,73.7093028979878,78.9696442316929,121.953030288916,88.2285233602677,264.870594049933,274.461992887365,237.407186046711,72.2621004185174,59.5754485925697,45.466024176677,211.300127480921,221.108757410165,252.807815236756,78.7019353423379,121.899897511884,82.2802207346299,86.1921568152723,76.1123393874856,69.8163289542892,122.325879318533,129.60265852222,146.903186241131,44.1769752798935,68.8251703108852,51.6939555153914,17.5996244461323,27.8530691743687,25.7957683620431,37.5522595858526,34.4340548850971,28.7376219977242,26.4417949113945,21.9432363543134,47.2446764360842,49.3279239071589,65.3687220094141,43.6165384310785,60.5349248020059,45.8288307508634,102.682499999421,85.2833355165687,79.5677801128101,84.0948071815111,58.6660079940463,59.6544235225764,50.6549493860569,148.287318114166,101.049826263869,92.37963404137,138.109970520158,82.3627185836091,88.4403563407172,49.1669334764992,54.717303521598,94.7656090353622,85.2647738181847,82.9376567078111,64.8120247590856,86.0017911074527,77.79376020119,74.5671556697307,154.342012131897,63.3945174504953,56.6442604855084,42.7703420001768,71.8243318000976,85.7510294734603,52.4709051519853,60.6149765232683,50.0888078121838,89.1101805053317,75.9530156025161,62.5641424773692,31.694892620815,40.9127524419218,61.246167123051,33.2524020193801,35.5949916551482,32.880159804107,59.6464460288324,31.6312665696713,39.9882276604007,34.1463272092348,31.7961924209116,35.4953294598801,7.65020105414339,8.15725774125745,36.6738554829792,34.4776879852549,44.6738747343387,60.3381279492515,44.0436081300698,57.9473702074121,23.8514888840046,20.645630282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757,6.14509409770568,27.0303698055406,46.2129825707345,86.4616408148307,28.9194273826361,68.5989869271169,47.9150019219588,110.523329533956,56.5103861062315,49.6381601462627,71.8404334231897,40.5953071964959,46.666461587605,21.4154130388732,21.3962026332236,53.2043452298309,61.9988663003275,49.0984081138937,28.2222750645704,11.7361187430217,57.4867881916034,40.7639979652974,24.4063133131259,35.1681305054892,16.5001217523296,25.5484191315751,61.2124196938567,53.4222294331502,53.8943888043555,75.4406807229322,52.1277959793914,65.0900022731681,22.4785684411445,32.7499377736934,76.6798625407946,108.853588348935,26.2493899580361,54.1416792772307,66.1592508617928,61.2411294734991,72.4698364228759,21.2030537102634,39.0992661517314,66.6103383172951,44.8570315698631,12.1739656110487,26.2506108465283,38.0691500324993,80.914528806741,27.4666720047513,30.1342377768134,15.7627141589594,87.4285588833302,28.9480003915458,0,87.8785175783027,0.521574816907738,24.0513409419076,30.2535599678034,22.1934020222135,11.0601545890255,31.4065971938803,82.1224085070124,103.704713591895,32.1774158145106,64.3790300608781,22.9552725391597,28.666168169323,10.4025551571947,23.1634551331973,40.2329152441489,9.71143255781842,21.4565266329556,10.4383298820438,47.1139663267365,17.77939922312,72.8159837090608,10.464967988426,0,0,114.278872579972,42.4457869593696,34.5324105596252,121.812179757634,34.5659133673007,23.5676547101626,57.518380864679,60.5974656667255,28.3179337480878,28.5477552675532,103.570277613799,76.0603078088211,5.09699895217138,42.1387295109352,24.3497461483827,50.1508541807302,16.7977369296699,24.7713813038452,34.2581603731969,49.3824989664668,34.7436514875574,44.9441211050589,48.1414424869014,30.1315964715069,30.0414158610422,26.3902202895511,5.17282341823824,0.109265571963696,16.5975036324982,4.79347499787314,10.1542614000913,10.8435981451117,3.50990555009325,55.2426710010965,32.1556956187414,46.4334886096916,40.442301382001,31.5586293213452,31.9006338161412,42.822447221272,62.1367890101538,31.5090533851524,39.7794739238531,26.2752345645685,32.4397954366472,21.902931269458,41.0174002858838,65.2672069073355,35.5946581504234,47.783718674642,21.2387418296654,11.5843369372164,45.1820766596132,46.9281884806909,35.694501701397,37.0275522267322,29.9590548383481,42.6700442412976,31.7362807380201|short_description=p1@LGALS8}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3964 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6569 | |||
|TSSclassifier=S | |||
|UniProt=E9PN19,C9JNF5,F6V2D4,E9PPM4,E9PNC2 | |||
|association_with_transcript=0bp_to_ENST00000323938,ENST00000356238,ENST00000366583,ENST00000416919,ENST00000434231,ENST00000442397,ENST00000475670,ENST00000528782,ENST00000532826_5end | |||
|description=CAGE_peak_1_at_LGALS8_5end | |||
|id=chr1:236687232..236687329,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.74e-26!76;CL:0000839!2.02e-24!70;CL:0000557!2.40e-22!71;CL:0002057!7.96e-21!42;CL:0002194!3.26e-20!63;CL:0000576!3.26e-20!63;CL:0000040!3.26e-20!63;CL:0000559!3.26e-20!63;CL:0002009!3.33e-20!65;CL:0000738!6.26e-19!140;CL:0000763!1.74e-18!112;CL:0000049!1.74e-18!112;CL:0002031!1.74e-18!124;CL:0000037!1.12e-16!172;CL:0000566!1.12e-16!172;CL:0000860!1.16e-16!45;CL:0002032!8.98e-16!165;CL:0000837!8.98e-16!165;CL:0002087!1.28e-15!119;CL:0000988!4.27e-15!182;CL:0000134!3.71e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000473;4.73e-17;39!CL:0000234;4.73e-17;39!CL:0000860;5.36e-17;33!CL:0002057;5.36e-17;33!CL:0000576;1.20e-15;48!CL:0000766;3.31e-14;69!CL:0000763;7.54e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.69e-30,72;CL:0000839,8.14e-29,66;CL:0000557,1.91e-26,67;CL:0002194,2.24e-24,59;CL:0000576,2.24e-24,59;CL:0000040,2.24e-24,59;CL:0000559,2.24e-24,59;CL:0002009,2.82e-24,61;CL:0000473,4.93e-24,48;CL:0000234,4.93e-24,48;CL:0000738,2.60e-21,136;CL:0000763,3.57e-21,108;CL:0000049,3.57e-21,108;CL:0002031,5.23e-21,120;CL:0000860,7.96e-21,42;CL:0002057,7.96e-21,42;CL:0000037,1.22e-18,168;CL:0002087,6.05e-18,115;CL:0002032,1.04e-17,161;CL:0000837,1.04e-17,161;CL:0000988,2.62e-17,177;CL:0000134,3.55e-08,354;CL:0002320,1.52e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.56e-15;42!CL:0000049;3.70e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.11e-23!112;UBERON:0002390!5.95e-23!102;UBERON:0003061!5.95e-23!102;UBERON:0002371!9.08e-18!80;UBERON:0001474!2.00e-15!86;UBERON:0002405!3.03e-15!115;UBERON:0004765!5.73e-14!101;UBERON:0001434!5.73e-14!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.58e-26,108;UBERON:0002390,3.15e-26,98;UBERON:0003061,3.15e-26,98;UBERON:0002405,9.01e-22,93;UBERON:0002371,5.13e-21,76;UBERON:0001474,2.99e-18,82;UBERON:0004765,6.98e-18,90;UBERON:0001434,7.96e-16,100 | |||
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| |||
|short_description=p1@LGALS8 | |||
}} |
Revision as of 04:25, 12 September 2013
Short description: | p1@LGALS8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LGALS8_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000323938, ENST00000356238, ENST00000366583, ENST00000416919, ENST00000434231, ENST00000442397, ENST00000475670, ENST00000528782, ENST00000532826_5end |
EntrezGene: | LGALS8 |
HGNC: | 6569 |
UniProt: | E9PN19C9JNF5F6V2D4E9PPM4E9PNC2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.69e-30 | 72 |
myeloid lineage restricted progenitor cell | 8.14e-29 | 66 |
granulocyte monocyte progenitor cell | 1.91e-26 | 67 |
monopoietic cell | 2.24e-24 | 59 |
monocyte | 2.24e-24 | 59 |
monoblast | 2.24e-24 | 59 |
promonocyte | 2.24e-24 | 59 |
macrophage dendritic cell progenitor | 2.82e-24 | 61 |
defensive cell | 4.93e-24 | 48 |
phagocyte | 4.93e-24 | 48 |
leukocyte | 2.60e-21 | 136 |
myeloid cell | 3.57e-21 | 108 |
common myeloid progenitor | 3.57e-21 | 108 |
hematopoietic lineage restricted progenitor cell | 5.23e-21 | 120 |
classical monocyte | 7.96e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.96e-21 | 42 |
hematopoietic stem cell | 1.22e-18 | 168 |
nongranular leukocyte | 6.05e-18 | 115 |
hematopoietic oligopotent progenitor cell | 1.04e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.04e-17 | 161 |
hematopoietic cell | 2.62e-17 | 177 |
mesenchymal cell | 3.55e-08 | 354 |
connective tissue cell | 1.52e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.58e-26 | 108 |
hematopoietic system | 3.15e-26 | 98 |
blood island | 3.15e-26 | 98 |
immune system | 9.01e-22 | 93 |
bone marrow | 5.13e-21 | 76 |
bone element | 2.99e-18 | 82 |
skeletal element | 6.98e-18 | 90 |
skeletal system | 7.96e-16 | 100 |
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