FFCP PHASE1:Hg19::chr1:201617754..201617765,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=89796|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15989|TSSclassifier=W|UniProt=A8MYI2,Q8NEY1|association_with_transcript=304bp_to_ENST00000295624,ENST00000367297,ENST00000367300,ENST00000391966,NM_020443,uc001gwu.2_5end|description=CAGE_peak_14_at_NAV1_5end|id=chr1:201617754..201617765,+|ontology_enrichment_celltype=CL:0000055!8.45e-21!180;CL:0000680!4.59e-11!57;CL:0000056!4.59e-11!57;CL:0000355!4.59e-11!57;CL:0000393!5.19e-11!60;CL:0000211!5.19e-11!60;CL:0000183!1.98e-10!59;CL:0000187!5.34e-10!54;CL:0000057!7.31e-10!75;CL:0000192!8.13e-08!42;CL:0000514!8.13e-08!42|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000393,1.47e-09,61;CL:0000211,1.47e-09,61;CL:0000680,2.52e-09,58;CL:0000056,2.52e-09,58;CL:0000355,2.52e-09,58;CL:0000187,3.17e-09,55;CL:0000192,1.54e-08,43;CL:0000514,1.54e-08,43;CL:0000057,5.38e-08,76|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004290!7.43e-13!70;UBERON:0000073!1.76e-12!94;UBERON:0001016!1.76e-12!94;UBERON:0000914!3.82e-12!83;UBERON:0002329!3.82e-12!83;UBERON:0003077!3.82e-12!83;UBERON:0003059!3.82e-12!83;UBERON:0007282!3.82e-12!83;UBERON:0009618!3.82e-12!83;UBERON:0007285!3.82e-12!83;UBERON:0000119!3.87e-12!312;UBERON:0001017!1.22e-11!82;UBERON:0001134!1.85e-11!61;UBERON:0002036!1.85e-11!61;UBERON:0003082!1.85e-11!61;UBERON:0000475!3.14e-11!365;UBERON:0000483!3.29e-11!309;UBERON:0002346!1.04e-10!90;UBERON:0000924!1.09e-10!173;UBERON:0006601!1.09e-10!173;UBERON:0002385!1.57e-10!63;UBERON:0001015!1.57e-10!63;UBERON:0000383!1.57e-10!63;UBERON:0005743!1.71e-10!86;UBERON:0003075!2.43e-10!86;UBERON:0007284!2.43e-10!86;UBERON:0004121!2.68e-10!169;UBERON:0001049!9.39e-10!57;UBERON:0005068!9.39e-10!57;UBERON:0006241!9.39e-10!57;UBERON:0007135!9.39e-10!57;UBERON:0001893!1.38e-09!34;UBERON:0002020!1.97e-09!34;UBERON:0003528!1.97e-09!34;UBERON:0000486!3.05e-09!82;UBERON:0000481!3.12e-09!347;UBERON:0002791!3.56e-09!33;UBERON:0001869!3.88e-09!32;UBERON:0000468!4.48e-09!659;UBERON:0000955!3.13e-08!69;UBERON:0006238!3.13e-08!69;UBERON:0002616!6.60e-08!59;UBERON:0002780!7.19e-08!41;UBERON:0001890!7.19e-08!41;UBERON:0006240!7.19e-08!41;UBERON:0003056!1.83e-07!61;UBERON:0003080!2.02e-07!42;UBERON:0000956!2.63e-07!25;UBERON:0000203!2.63e-07!25;UBERON:0000467!2.94e-07!625;UBERON:0000033!3.24e-07!123;UBERON:0000480!3.96e-07!626;UBERON:0001950!4.59e-07!20;UBERON:0002619!6.09e-07!22;UBERON:0000922!9.39e-07!612|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002329,8.74e-12,71;UBERON:0003059,8.74e-12,71;UBERON:0007282,8.74e-12,71;UBERON:0004290,8.74e-12,71;UBERON:0009618,8.74e-12,71;UBERON:0003077,1.64e-11,72;UBERON:0007285,1.64e-11,72;UBERON:0007524,3.02e-11,73;UBERON:0007503,7.65e-11,78;UBERON:0001134,3.29e-09,62;UBERON:0002036,3.29e-09,62;UBERON:0003082,3.29e-09,62;UBERON:0000486,5.67e-09,83;UBERON:0002385,9.98e-09,64;UBERON:0001015,9.98e-09,64;UBERON:0000383,9.98e-09,64;UBERON:0005256,3.55e-08,122;UBERON:0000490,7.78e-07,148|phase1_expression=0.54503513781167,0.214100523890983,0.563817616383885,0,0,0,0,1.89515962028049,1.30592814099919,0.982935746006035,0,0,0,0.123766352960047,0,0,0,0,0,0.246242116153576,1.02000345622126,0.313454721478088,0.286235987131057,0.273748850145768,0.753255837568817,0.0764134057479513,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0.447830948479849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.722878304769133,2.00535164254356,0.434539556882471,1.5905718941022,0.486634870302636,0.0945348171640679,0.443458794925128,0.175669571386252,0.261958150995425,0.728590576585084,0,0,0,0.132957960518865,0,0,0,0.198762407366705,0.860234595106124,0,0.56530794192401,0,0,0.417989933073621,0.516833518338658,0.35576626268671,0,0,0,0,0,0,0.357198913136319,0,0.337834441449967,3.06633274931766,0,0.366403487860815,0,0,0,0,0.506522046658319,1.85372853138506,1.14734648299525,1.77334191099179,0,0,0.24666754841716,0,0.134710672069688,0.163461903113459,0,0,0,1.24864030732128,1.1409436430889,1.64393548606981,0.117434498643765,0.323745888736263,1.12360645361799,5.30800845262722,2.08818339430006,2.27316718586684,1.18800285728205,0.247266929278557,0,0.718618141816238,1.68336113954066,1.87677779807946,3.3247693858102,0,0,0.45071417671979,0.113432183160021,0.358779271377724,0,0.847727604638247,0.300091096084402,0.206105058476878,0.257640540045629,0.744467425326359,1.5189869901714,0.194874010322397,0.757301322732344,0.552299391853796,0.646584227275248,0.710019185033229,0.10075209822764,0.508681776931463,0,0,0,0.975789649036763,0.397589304964456,0.464775771478074,0.518305275076852,0,0.72995471815166,0,0,2.76269842704961,0,0.721879481669586,0.118306800039844,0.674338760312407,0.241011029883482,0.110293972732394,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=89796 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15989 | |||
|TSSclassifier=W | |||
|UniProt=A8MYI2,Q8NEY1 | |||
|association_with_transcript=304bp_to_ENST00000295624,ENST00000367297,ENST00000367300,ENST00000391966,NM_020443,uc001gwu.2_5end | |||
|description=CAGE_peak_14_at_NAV1_5end | |||
|id=chr1:201617754..201617765,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.45e-21!180;CL:0000680!4.59e-11!57;CL:0000056!4.59e-11!57;CL:0000355!4.59e-11!57;CL:0000393!5.19e-11!60;CL:0000211!5.19e-11!60;CL:0000183!1.98e-10!59;CL:0000187!5.34e-10!54;CL:0000057!7.31e-10!75;CL:0000192!8.13e-08!42;CL:0000514!8.13e-08!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.47e-09,61;CL:0000211,1.47e-09,61;CL:0000680,2.52e-09,58;CL:0000056,2.52e-09,58;CL:0000355,2.52e-09,58;CL:0000187,3.17e-09,55;CL:0000192,1.54e-08,43;CL:0000514,1.54e-08,43;CL:0000057,5.38e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!7.43e-13!70;UBERON:0000073!1.76e-12!94;UBERON:0001016!1.76e-12!94;UBERON:0000914!3.82e-12!83;UBERON:0002329!3.82e-12!83;UBERON:0003077!3.82e-12!83;UBERON:0003059!3.82e-12!83;UBERON:0007282!3.82e-12!83;UBERON:0009618!3.82e-12!83;UBERON:0007285!3.82e-12!83;UBERON:0000119!3.87e-12!312;UBERON:0001017!1.22e-11!82;UBERON:0001134!1.85e-11!61;UBERON:0002036!1.85e-11!61;UBERON:0003082!1.85e-11!61;UBERON:0000475!3.14e-11!365;UBERON:0000483!3.29e-11!309;UBERON:0002346!1.04e-10!90;UBERON:0000924!1.09e-10!173;UBERON:0006601!1.09e-10!173;UBERON:0002385!1.57e-10!63;UBERON:0001015!1.57e-10!63;UBERON:0000383!1.57e-10!63;UBERON:0005743!1.71e-10!86;UBERON:0003075!2.43e-10!86;UBERON:0007284!2.43e-10!86;UBERON:0004121!2.68e-10!169;UBERON:0001049!9.39e-10!57;UBERON:0005068!9.39e-10!57;UBERON:0006241!9.39e-10!57;UBERON:0007135!9.39e-10!57;UBERON:0001893!1.38e-09!34;UBERON:0002020!1.97e-09!34;UBERON:0003528!1.97e-09!34;UBERON:0000486!3.05e-09!82;UBERON:0000481!3.12e-09!347;UBERON:0002791!3.56e-09!33;UBERON:0001869!3.88e-09!32;UBERON:0000468!4.48e-09!659;UBERON:0000955!3.13e-08!69;UBERON:0006238!3.13e-08!69;UBERON:0002616!6.60e-08!59;UBERON:0002780!7.19e-08!41;UBERON:0001890!7.19e-08!41;UBERON:0006240!7.19e-08!41;UBERON:0003056!1.83e-07!61;UBERON:0003080!2.02e-07!42;UBERON:0000956!2.63e-07!25;UBERON:0000203!2.63e-07!25;UBERON:0000467!2.94e-07!625;UBERON:0000033!3.24e-07!123;UBERON:0000480!3.96e-07!626;UBERON:0001950!4.59e-07!20;UBERON:0002619!6.09e-07!22;UBERON:0000922!9.39e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,8.74e-12,71;UBERON:0003059,8.74e-12,71;UBERON:0007282,8.74e-12,71;UBERON:0004290,8.74e-12,71;UBERON:0009618,8.74e-12,71;UBERON:0003077,1.64e-11,72;UBERON:0007285,1.64e-11,72;UBERON:0007524,3.02e-11,73;UBERON:0007503,7.65e-11,78;UBERON:0001134,3.29e-09,62;UBERON:0002036,3.29e-09,62;UBERON:0003082,3.29e-09,62;UBERON:0000486,5.67e-09,83;UBERON:0002385,9.98e-09,64;UBERON:0001015,9.98e-09,64;UBERON:0000383,9.98e-09,64;UBERON:0005256,3.55e-08,122;UBERON:0000490,7.78e-07,148 | |||
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| |||
|short_description=p14@NAV1 | |||
}} |
Revision as of 02:46, 12 September 2013
Short description: | p14@NAV1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_NAV1_5end |
Coexpression cluster: | NA |
Association with transcript: | 304bp_to_ENST00000295624, ENST00000367297, ENST00000367300, ENST00000391966, NM_020443, uc001gwu.2_5end |
EntrezGene: | NAV1 |
HGNC: | 15989 |
UniProt: | A8MYI2Q8NEY1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.47e-09 | 61 |
electrically active cell | 1.47e-09 | 61 |
muscle precursor cell | 2.52e-09 | 58 |
myoblast | 2.52e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.52e-09 | 58 |
muscle cell | 3.17e-09 | 55 |
smooth muscle cell | 1.54e-08 | 43 |
smooth muscle myoblast | 1.54e-08 | 43 |
fibroblast | 5.38e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
somite | 8.74e-12 | 71 |
presomitic mesoderm | 8.74e-12 | 71 |
presumptive segmental plate | 8.74e-12 | 71 |
dermomyotome | 8.74e-12 | 71 |
trunk paraxial mesoderm | 8.74e-12 | 71 |
paraxial mesoderm | 1.64e-11 | 72 |
presumptive paraxial mesoderm | 1.64e-11 | 72 |
dense mesenchyme tissue | 3.02e-11 | 73 |
epithelial vesicle | 7.65e-11 | 78 |
skeletal muscle tissue | 3.29e-09 | 62 |
striated muscle tissue | 3.29e-09 | 62 |
myotome | 3.29e-09 | 62 |
multilaminar epithelium | 5.67e-09 | 83 |
muscle tissue | 9.98e-09 | 64 |
musculature | 9.98e-09 | 64 |
musculature of body | 9.98e-09 | 64 |
trunk mesenchyme | 3.55e-08 | 122 |
unilaminar epithelium | 7.78e-07 | 148 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.