FFCP PHASE1:Hg19::chr1:160336851..160336868,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4807|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7817|TSSclassifier=W|UniProt=Q02575,Q5T203|association_with_transcript=0bp_to_ENST00000302101,NM_005598,uc001fwa.2_5end|coexpression_cluster_id=C171|description=CAGE_peak_1_at_NHLH1_5end|id=chr1:160336851..160336868,+|ontology_enrichment_celltype=CL:0002319!1.50e-12!25;CL:0002322!1.56e-10!5;CL:0000047!2.89e-10!8;CL:0000133!1.48e-08!59;CL:0000242!3.17e-08!2;CL:0000039!4.91e-07!7;CL:0000586!4.91e-07!7|ontology_enrichment_celltype_v019=CL:0002319;1.16e-18;25!CL:0000123;1.73e-18;2!CL:0000242;1.73e-18;2!CL:0000540;7.67e-13;6!CL:0000404;7.67e-13;6!CL:0000312;6.29e-08;5!CL:0000095;2.40e-07;17!CL:0000240;9.74e-07;6!CL:0000311;9.74e-07;6!CL:0000079;9.74e-07;6!CL:0000237;9.74e-07;6|ontology_enrichment_celltype_v019_2=CL:0002319,1.18e-18,25;CL:0000242,1.73e-18,2;CL:0000047,1.67e-16,8;CL:0000540,8.32e-13,6;CL:0000031,8.32e-13,6;CL:0000404,8.32e-13,6;CL:0000133,3.82e-12,59;CL:0000221,9.78e-10,72;CL:0000312,6.30e-08,5;CL:0000095,2.34e-07,17;CL:0000123,2.34e-07,17;CL:0000240,9.74e-07,6;CL:0000311,9.74e-07,6;CL:0000079,9.74e-07,6;CL:0000237,9.74e-07,6;CL:0000036,9.74e-07,6;CL:0000357,9.74e-07,6;CL:0000114,9.74e-07,6|ontology_enrichment_development_v019=CL:0000031;7.67e-13;6!UBERON:0006238;3.10e-07;10!CL:0000357;9.74e-07;6!CL:0000114;9.74e-07;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!1.11e-17!86;UBERON:0001017!2.67e-17!82;UBERON:0000073!5.47e-17!94;UBERON:0001016!5.47e-17!94;UBERON:0003076!3.62e-15!15;UBERON:0003057!3.62e-15!15;UBERON:0000924!2.72e-12!173;UBERON:0006601!2.72e-12!173;UBERON:0002346!3.83e-12!90;UBERON:0004733!1.23e-11!12;UBERON:0002028!1.23e-11!12;UBERON:0007277!1.23e-11!12;UBERON:0001049!1.77e-11!57;UBERON:0005068!1.77e-11!57;UBERON:0006241!1.77e-11!57;UBERON:0007135!1.77e-11!57;UBERON:0004121!6.54e-11!169;UBERON:0004732!1.15e-10!13;UBERON:0003075!1.67e-10!86;UBERON:0007284!1.67e-10!86;UBERON:0000955!5.41e-10!69;UBERON:0006238!5.41e-10!69;UBERON:0000473!4.41e-09!8;UBERON:0002680!2.03e-08!9;UBERON:0001895!2.03e-08!9;UBERON:0010092!2.03e-08!9;UBERON:0002616!3.19e-08!59;UBERON:0001905!3.16e-07!2;UBERON:0002757!3.16e-07!2;UBERON:0010134!3.16e-07!2;UBERON:0002784!3.16e-07!2;UBERON:0005408!3.16e-07!2;UBERON:0001899!3.16e-07!2;UBERON:0001954!4.06e-07!2;UBERON:0003022!4.06e-07!2;UBERON:0002421!4.06e-07!2;UBERON:0002600!4.06e-07!2;UBERON:0002148!5.71e-07!2;UBERON:0009662!5.71e-07!2|ontology_enrichment_uberon_v019=UBERON:0007029;1.76e-09;1!UBERON:0000922;2.15e-07;49|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.52e-11,89;UBERON:0001017,3.86e-10,81;UBERON:0007029,1.36e-09,1;UBERON:0004121,4.46e-08,171;UBERON:0000924,4.46e-08,171;UBERON:0006601,4.46e-08,171|phase1_expression=0,0,0,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.265059536642971,0.813357600086629,10.1587833915063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579652024875384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,2.60279707715243,2.31986643833309,1.67516265334349,5.10351001322531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81974010175699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,62.7432939299466,2.04123229368278,10.9383746807974,0,0,0,2.10100593869327,0.886642856860642,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0.225595660617181,0.19606253431774,0.503464760927528,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,4.28501866282686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,25.5676546814327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82092520749339,0,0,0,0,0.129282956361551,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.496771223531068,2.76697269872462,0,0,0,0,146.120490611747,252.307510811447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,238.778791223918,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4807 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7817 | |||
|TSSclassifier=W | |||
|UniProt=Q02575,Q5T203 | |||
|association_with_transcript=0bp_to_ENST00000302101,NM_005598,uc001fwa.2_5end | |||
|coexpression_cluster_id=C171 | |||
|description=CAGE_peak_1_at_NHLH1_5end | |||
|id=chr1:160336851..160336868,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.50e-12!25;CL:0002322!1.56e-10!5;CL:0000047!2.89e-10!8;CL:0000133!1.48e-08!59;CL:0000242!3.17e-08!2;CL:0000039!4.91e-07!7;CL:0000586!4.91e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.16e-18;25!CL:0000123;1.73e-18;2!CL:0000242;1.73e-18;2!CL:0000540;7.67e-13;6!CL:0000404;7.67e-13;6!CL:0000312;6.29e-08;5!CL:0000095;2.40e-07;17!CL:0000240;9.74e-07;6!CL:0000311;9.74e-07;6!CL:0000079;9.74e-07;6!CL:0000237;9.74e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.18e-18,25;CL:0000242,1.73e-18,2;CL:0000047,1.67e-16,8;CL:0000540,8.32e-13,6;CL:0000031,8.32e-13,6;CL:0000404,8.32e-13,6;CL:0000133,3.82e-12,59;CL:0000221,9.78e-10,72;CL:0000312,6.30e-08,5;CL:0000095,2.34e-07,17;CL:0000123,2.34e-07,17;CL:0000240,9.74e-07,6;CL:0000311,9.74e-07,6;CL:0000079,9.74e-07,6;CL:0000237,9.74e-07,6;CL:0000036,9.74e-07,6;CL:0000357,9.74e-07,6;CL:0000114,9.74e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;7.67e-13;6!UBERON:0006238;3.10e-07;10!CL:0000357;9.74e-07;6!CL:0000114;9.74e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.11e-17!86;UBERON:0001017!2.67e-17!82;UBERON:0000073!5.47e-17!94;UBERON:0001016!5.47e-17!94;UBERON:0003076!3.62e-15!15;UBERON:0003057!3.62e-15!15;UBERON:0000924!2.72e-12!173;UBERON:0006601!2.72e-12!173;UBERON:0002346!3.83e-12!90;UBERON:0004733!1.23e-11!12;UBERON:0002028!1.23e-11!12;UBERON:0007277!1.23e-11!12;UBERON:0001049!1.77e-11!57;UBERON:0005068!1.77e-11!57;UBERON:0006241!1.77e-11!57;UBERON:0007135!1.77e-11!57;UBERON:0004121!6.54e-11!169;UBERON:0004732!1.15e-10!13;UBERON:0003075!1.67e-10!86;UBERON:0007284!1.67e-10!86;UBERON:0000955!5.41e-10!69;UBERON:0006238!5.41e-10!69;UBERON:0000473!4.41e-09!8;UBERON:0002680!2.03e-08!9;UBERON:0001895!2.03e-08!9;UBERON:0010092!2.03e-08!9;UBERON:0002616!3.19e-08!59;UBERON:0001905!3.16e-07!2;UBERON:0002757!3.16e-07!2;UBERON:0010134!3.16e-07!2;UBERON:0002784!3.16e-07!2;UBERON:0005408!3.16e-07!2;UBERON:0001899!3.16e-07!2;UBERON:0001954!4.06e-07!2;UBERON:0003022!4.06e-07!2;UBERON:0002421!4.06e-07!2;UBERON:0002600!4.06e-07!2;UBERON:0002148!5.71e-07!2;UBERON:0009662!5.71e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0007029;1.76e-09;1!UBERON:0000922;2.15e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.52e-11,89;UBERON:0001017,3.86e-10,81;UBERON:0007029,1.36e-09,1;UBERON:0004121,4.46e-08,171;UBERON:0000924,4.46e-08,171;UBERON:0006601,4.46e-08,171 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.265059536642971,0.813357600086629,10.1587833915063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579652024875384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,2.60279707715243,2.31986643833309,1.67516265334349,5.10351001322531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81974010175699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,62.7432939299466,2.04123229368278,10.9383746807974,0,0,0,2.10100593869327,0.886642856860642,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0.225595660617181,0.19606253431774,0.503464760927528,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,4.28501866282686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,25.5676546814327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82092520749339,0,0,0,0,0.129282956361551,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.496771223531068,2.76697269872462,0,0,0,0,146.120490611747,252.307510811447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,238.778791223918,0,0,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0,0,0,0,8.3183659753167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.92277328116398,0,0,0,0,0.535701835878287,0.336283722218824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,5.53047641064543,0,7.12818916440576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91426595835484,0,0.198950775161368,0,0,21.6582817988495,0,0,0,0,0,0,0.588925401344836,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0,3.05445483238264,0,0,0,0,0,0,0,0.407955318967927,0.26721740526556,0.0918948995348449,0.250707539292375,0.0757786982182394,0,0,0,0,0,0,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |||
|short_description=p1@NHLH1 | |||
}} |
Revision as of 01:15, 12 September 2013
Short description: | p1@NHLH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_NHLH1_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | 0bp_to_ENST00000302101, NM_005598, uc001fwa.2_5end |
EntrezGene: | NHLH1 |
HGNC: | 7817 |
UniProt: | Q02575Q5T203 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.18e-18 | 25 |
Merkel cell | 1.73e-18 | 2 |
neuronal stem cell | 1.67e-16 | 8 |
neuron | 8.32e-13 | 6 |
neuroblast | 8.32e-13 | 6 |
electrically signaling cell | 8.32e-13 | 6 |
neurectodermal cell | 3.82e-12 | 59 |
ectodermal cell | 9.78e-10 | 72 |
keratinocyte | 6.30e-08 | 5 |
neuron associated cell | 2.34e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 2.34e-07 | 17 |
stratified squamous epithelial cell | 9.74e-07 | 6 |
keratin accumulating cell | 9.74e-07 | 6 |
stratified epithelial cell | 9.74e-07 | 6 |
keratinizing barrier epithelial cell | 9.74e-07 | 6 |
epithelial fate stem cell | 9.74e-07 | 6 |
stratified epithelial stem cell | 9.74e-07 | 6 |
surface ectodermal cell | 9.74e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.52e-11 | 89 |
central nervous system | 3.86e-10 | 81 |
surface | 1.36e-09 | 1 |
ectoderm-derived structure | 4.46e-08 | 171 |
ectoderm | 4.46e-08 | 171 |
presumptive ectoderm | 4.46e-08 | 171 |
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