FFCP PHASE1:Hg19::chr1:159796650..159796690,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=56833|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21391|TSSclassifier=S|UniProt=|association_with_transcript=49bp_to_ENST00000368104_5end|coexpression_cluster_id=C1153|description=CAGE_peak_1_at_SLAMF8_5end|id=chr1:159796650..159796690,+|ontology_enrichment_celltype=CL:0002009!1.23e-35!65;CL:0002194!1.14e-33!63;CL:0000576!1.14e-33!63;CL:0000040!1.14e-33!63;CL:0000559!1.14e-33!63;CL:0000557!7.73e-32!71;CL:0002057!2.23e-29!42;CL:0000839!3.04e-29!70;CL:0000766!1.60e-27!76;CL:0000860!2.36e-26!45;CL:0002087!1.77e-16!119;CL:0000763!1.04e-15!112;CL:0000049!1.04e-15!112;CL:0002031!1.94e-15!124;CL:0000738!3.55e-14!140;CL:0000037!7.88e-09!172;CL:0000566!7.88e-09!172;CL:0002032!9.85e-09!165;CL:0000837!9.85e-09!165;CL:0000988!2.35e-07!182|ontology_enrichment_celltype_v019=CL:0000473;1.07e-32;39!CL:0000234;1.07e-32;39!CL:0000860;1.84e-30;33!CL:0002057;1.84e-30;33!CL:0000576;4.05e-24;48!CL:0000766;1.08e-14;69!CL:0000235;3.77e-12;6!CL:0000840;3.21e-08;5!CL:0000763;1.05e-07;100!CL:0002619;4.91e-07;3|ontology_enrichment_celltype_v019_2=CL:0002009,2.21e-48,61;CL:0002194,2.81e-45,59;CL:0000576,2.81e-45,59;CL:0000040,2.81e-45,59;CL:0000559,2.81e-45,59;CL:0000557,9.67e-43,67;CL:0000473,7.04e-42,48;CL:0000234,7.04e-42,48;CL:0000839,5.34e-39,66;CL:0000766,1.36e-34,72;CL:0000860,3.65e-32,42;CL:0002057,3.65e-32,42;CL:0000763,2.65e-22,108;CL:0000049,2.65e-22,108;CL:0002031,1.51e-18,120;CL:0002087,1.41e-17,115;CL:0000738,8.87e-15,136;CL:0000235,3.83e-12,6;CL:0002032,3.29e-11,161;CL:0000837,3.29e-11,161;CL:0000037,3.21e-10,168;CL:0000988,4.42e-09,177;CL:0000840,3.24e-08,5;CL:0001029,3.24e-08,5;CL:0002619,4.95e-07,3|ontology_enrichment_development_v019=CL:0002057;1.29e-23;42!CL:0000049;1.09e-08;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.98e-33!115;UBERON:0002390!4.64e-29!102;UBERON:0003061!4.64e-29!102;UBERON:0002193!1.19e-27!112;UBERON:0002371!3.51e-27!80;UBERON:0001474!8.40e-24!86;UBERON:0002405!1.38e-21!115;UBERON:0004765!5.46e-18!101;UBERON:0001434!5.46e-18!101;UBERON:0000062!1.96e-14!511;UBERON:0003081!2.07e-12!216;UBERON:0000467!5.36e-11!625;UBERON:0000480!6.83e-11!626;UBERON:0001049!3.95e-09!57;UBERON:0005068!3.95e-09!57;UBERON:0006241!3.95e-09!57;UBERON:0007135!3.95e-09!57;UBERON:0000468!5.78e-09!659;UBERON:0000479!7.88e-09!787;UBERON:0000923!1.33e-08!604;UBERON:0005291!1.33e-08!604;UBERON:0006598!1.33e-08!604;UBERON:0002532!1.33e-08!604;UBERON:0002050!1.65e-08!605;UBERON:0005423!1.65e-08!605;UBERON:0000922!3.59e-08!612;UBERON:0002204!2.67e-07!167;UBERON:0002616!5.22e-07!59;UBERON:0003080!9.57e-07!42|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002405,1.42e-38,93;UBERON:0002371,8.59e-38,76;UBERON:0002390,8.48e-37,98;UBERON:0003061,8.48e-37,98;UBERON:0002193,3.90e-35,108;UBERON:0001474,6.07e-34,82;UBERON:0004765,1.28e-29,90;UBERON:0001434,3.30e-25,100;UBERON:0003081,4.40e-16,203;UBERON:0007023,2.75e-15,114;UBERON:0002204,1.03e-11,167;UBERON:0000926,7.71e-11,315;UBERON:0004120,7.71e-11,315;UBERON:0006603,7.71e-11,315;UBERON:0000923,1.64e-09,560;UBERON:0010316,1.64e-09,560;UBERON:0005291,1.64e-09,560;UBERON:0006598,1.64e-09,560;UBERON:0010317,1.64e-09,560;UBERON:0002532,1.64e-09,560;UBERON:0002050,2.97e-09,564;UBERON:0005423,1.04e-08,581;UBERON:0000922,4.76e-08,592;UBERON:0003124,2.84e-07,7|phase1_expression=0,0,0.140954404095971,0,0,0,0,4.42203911398782,0,0,0,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0.152826811495903,0,0,0,0.383829398097213,0.77408061658038,0,0,0,0,0,0,0,0.401088894940283,1.08505435357926,162.786549772425,146.399937040579,146.560497983852,2.32637182047304,4.53451132426571,3.39617685662943,1.85943229524548,2.87817521615278,0.929119112685311,116.803111282793,110.661425220571,106.653485679752,1.37898272294647,2.5819387343353,4.06279459783025,0.752969358170419,1.09162460023138,1.12361742222542,2.75475503133812,0.320929027076094,1.27867425159808,63.0015983356628,96.3409466312482,90.3596471129312,0.870627715885752,1.13477044938228,1.24564449799115,60.0484309963616,81.8728181919716,82.0973832985341,2.42159801053347,2.20966581592539,2.21523671208619,2.95757400836718,1.91343869968539,2.30624510059213,1.57260083605093,2.55300717830561,0.64290234678832,0.285012743741249,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602300476311091,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0,0,0,0,0,0,0,0,2.3858578411533,4.37971383272372,0,0,0,1.44076983047484,0,0,72.6986161786491,88.632036285327,95.4638156525452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0.354668382198357,0,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,1.56449532329816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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=56833 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21391 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=49bp_to_ENST00000368104_5end | |||
|coexpression_cluster_id=C1153 | |||
|description=CAGE_peak_1_at_SLAMF8_5end | |||
|id=chr1:159796650..159796690,+ | |||
|ontology_enrichment_celltype=CL:0002009!1.23e-35!65;CL:0002194!1.14e-33!63;CL:0000576!1.14e-33!63;CL:0000040!1.14e-33!63;CL:0000559!1.14e-33!63;CL:0000557!7.73e-32!71;CL:0002057!2.23e-29!42;CL:0000839!3.04e-29!70;CL:0000766!1.60e-27!76;CL:0000860!2.36e-26!45;CL:0002087!1.77e-16!119;CL:0000763!1.04e-15!112;CL:0000049!1.04e-15!112;CL:0002031!1.94e-15!124;CL:0000738!3.55e-14!140;CL:0000037!7.88e-09!172;CL:0000566!7.88e-09!172;CL:0002032!9.85e-09!165;CL:0000837!9.85e-09!165;CL:0000988!2.35e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.07e-32;39!CL:0000234;1.07e-32;39!CL:0000860;1.84e-30;33!CL:0002057;1.84e-30;33!CL:0000576;4.05e-24;48!CL:0000766;1.08e-14;69!CL:0000235;3.77e-12;6!CL:0000840;3.21e-08;5!CL:0000763;1.05e-07;100!CL:0002619;4.91e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,2.21e-48,61;CL:0002194,2.81e-45,59;CL:0000576,2.81e-45,59;CL:0000040,2.81e-45,59;CL:0000559,2.81e-45,59;CL:0000557,9.67e-43,67;CL:0000473,7.04e-42,48;CL:0000234,7.04e-42,48;CL:0000839,5.34e-39,66;CL:0000766,1.36e-34,72;CL:0000860,3.65e-32,42;CL:0002057,3.65e-32,42;CL:0000763,2.65e-22,108;CL:0000049,2.65e-22,108;CL:0002031,1.51e-18,120;CL:0002087,1.41e-17,115;CL:0000738,8.87e-15,136;CL:0000235,3.83e-12,6;CL:0002032,3.29e-11,161;CL:0000837,3.29e-11,161;CL:0000037,3.21e-10,168;CL:0000988,4.42e-09,177;CL:0000840,3.24e-08,5;CL:0001029,3.24e-08,5;CL:0002619,4.95e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.29e-23;42!CL:0000049;1.09e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.98e-33!115;UBERON:0002390!4.64e-29!102;UBERON:0003061!4.64e-29!102;UBERON:0002193!1.19e-27!112;UBERON:0002371!3.51e-27!80;UBERON:0001474!8.40e-24!86;UBERON:0002405!1.38e-21!115;UBERON:0004765!5.46e-18!101;UBERON:0001434!5.46e-18!101;UBERON:0000062!1.96e-14!511;UBERON:0003081!2.07e-12!216;UBERON:0000467!5.36e-11!625;UBERON:0000480!6.83e-11!626;UBERON:0001049!3.95e-09!57;UBERON:0005068!3.95e-09!57;UBERON:0006241!3.95e-09!57;UBERON:0007135!3.95e-09!57;UBERON:0000468!5.78e-09!659;UBERON:0000479!7.88e-09!787;UBERON:0000923!1.33e-08!604;UBERON:0005291!1.33e-08!604;UBERON:0006598!1.33e-08!604;UBERON:0002532!1.33e-08!604;UBERON:0002050!1.65e-08!605;UBERON:0005423!1.65e-08!605;UBERON:0000922!3.59e-08!612;UBERON:0002204!2.67e-07!167;UBERON:0002616!5.22e-07!59;UBERON:0003080!9.57e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,1.42e-38,93;UBERON:0002371,8.59e-38,76;UBERON:0002390,8.48e-37,98;UBERON:0003061,8.48e-37,98;UBERON:0002193,3.90e-35,108;UBERON:0001474,6.07e-34,82;UBERON:0004765,1.28e-29,90;UBERON:0001434,3.30e-25,100;UBERON:0003081,4.40e-16,203;UBERON:0007023,2.75e-15,114;UBERON:0002204,1.03e-11,167;UBERON:0000926,7.71e-11,315;UBERON:0004120,7.71e-11,315;UBERON:0006603,7.71e-11,315;UBERON:0000923,1.64e-09,560;UBERON:0010316,1.64e-09,560;UBERON:0005291,1.64e-09,560;UBERON:0006598,1.64e-09,560;UBERON:0010317,1.64e-09,560;UBERON:0002532,1.64e-09,560;UBERON:0002050,2.97e-09,564;UBERON:0005423,1.04e-08,581;UBERON:0000922,4.76e-08,592;UBERON:0003124,2.84e-07,7 | |||
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| |||
|short_description=p1@SLAMF8 | |||
}} |
Revision as of 01:09, 12 September 2013
Short description: | p1@SLAMF8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SLAMF8_5end |
Coexpression cluster: | C1153_Monocytederived_CD14_Dendritic_Macrophage_acute_spleen_lymph |
Association with transcript: | 49bp_to_ENST00000368104_5end |
EntrezGene: | SLAMF8 |
HGNC: | 21391 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 2.21e-48 | 61 |
monopoietic cell | 2.81e-45 | 59 |
monocyte | 2.81e-45 | 59 |
monoblast | 2.81e-45 | 59 |
promonocyte | 2.81e-45 | 59 |
granulocyte monocyte progenitor cell | 9.67e-43 | 67 |
defensive cell | 7.04e-42 | 48 |
phagocyte | 7.04e-42 | 48 |
myeloid lineage restricted progenitor cell | 5.34e-39 | 66 |
myeloid leukocyte | 1.36e-34 | 72 |
classical monocyte | 3.65e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.65e-32 | 42 |
myeloid cell | 2.65e-22 | 108 |
common myeloid progenitor | 2.65e-22 | 108 |
hematopoietic lineage restricted progenitor cell | 1.51e-18 | 120 |
nongranular leukocyte | 1.41e-17 | 115 |
leukocyte | 8.87e-15 | 136 |
macrophage | 3.83e-12 | 6 |
hematopoietic oligopotent progenitor cell | 3.29e-11 | 161 |
hematopoietic multipotent progenitor cell | 3.29e-11 | 161 |
hematopoietic stem cell | 3.21e-10 | 168 |
hematopoietic cell | 4.42e-09 | 177 |
immature conventional dendritic cell | 3.24e-08 | 5 |
common dendritic progenitor | 3.24e-08 | 5 |
adult endothelial progenitor cell | 4.95e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
immune system | 1.42e-38 | 93 |
bone marrow | 8.59e-38 | 76 |
hematopoietic system | 8.48e-37 | 98 |
blood island | 8.48e-37 | 98 |
hemolymphoid system | 3.90e-35 | 108 |
bone element | 6.07e-34 | 82 |
skeletal element | 1.28e-29 | 90 |
skeletal system | 3.30e-25 | 100 |
lateral plate mesoderm | 4.40e-16 | 203 |
adult organism | 2.75e-15 | 114 |
musculoskeletal system | 1.03e-11 | 167 |
mesoderm | 7.71e-11 | 315 |
mesoderm-derived structure | 7.71e-11 | 315 |
presumptive mesoderm | 7.71e-11 | 315 |
germ layer | 1.64e-09 | 560 |
germ layer / neural crest | 1.64e-09 | 560 |
embryonic tissue | 1.64e-09 | 560 |
presumptive structure | 1.64e-09 | 560 |
germ layer / neural crest derived structure | 1.64e-09 | 560 |
epiblast (generic) | 1.64e-09 | 560 |
embryonic structure | 2.97e-09 | 564 |
developing anatomical structure | 1.04e-08 | 581 |
embryo | 4.76e-08 | 592 |
chorion | 2.84e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.