FFCP PHASE1:Hg19::chr1:156123347..156123358,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64218|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10729|TSSclassifier=S|UniProt=Q5TCJ6,B3KR76,Q9H3S1|association_with_transcript=-10bp_to_ENST00000368284,NM_001193302_5end|description=CAGE_peak_4_at_SEMA4A_5end|id=chr1:156123347..156123358,+|ontology_enrichment_celltype=CL:0002076!1.45e-19!43;CL:0000066!1.14e-16!254;CL:0000223!5.62e-13!59;CL:0002368!3.38e-12!13;CL:0002159!3.24e-08!13;CL:0002202!1.34e-07!9;CL:0002632!1.34e-07!9;CL:0002251!4.29e-07!21;CL:0000244!7.55e-07!4;CL:0000731!7.55e-07!4|ontology_enrichment_celltype_v019=CL:0002368;3.41e-21;13!CL:0002076;1.38e-16;42!CL:0002202;5.78e-13;9!CL:0002632;5.78e-13;9!CL:0002159;8.24e-11;14!CL:0000307;1.94e-08;3!CL:0002328;2.91e-08;3!CL:0000240;2.34e-07;6!CL:0000311;2.34e-07;6!CL:0000079;2.34e-07;6!CL:0000237;2.34e-07;6!CL:0000362;2.47e-07;9!CL:0000244;4.90e-07;4!CL:0000731;4.90e-07;4!CL:0002251;7.42e-07;20|ontology_enrichment_celltype_v019_2=CL:0002368,4.21e-21,13;CL:0002076,1.24e-20,42;CL:0000066,4.97e-15,253;CL:0000223,5.66e-15,58;CL:0002202,6.71e-13,9;CL:0002632,6.71e-13,9;CL:0002159,6.12e-11,14;CL:0002328,1.49e-08,3;CL:0000068,3.91e-08,3;CL:0000069,3.91e-08,3;CL:0000307,3.91e-08,3;CL:0000377,3.91e-08,3;CL:0000240,2.09e-07,6;CL:0000311,2.09e-07,6;CL:0000079,2.09e-07,6;CL:0000237,2.09e-07,6;CL:0000036,2.09e-07,6;CL:0000357,2.09e-07,6;CL:0000114,2.09e-07,6;CL:0000362,2.26e-07,9;CL:0000244,5.43e-07,4;CL:0000731,5.43e-07,4;CL:0002251,6.94e-07,20|ontology_enrichment_development_v019=CL:0000223;1.87e-09;58!CL:0000377;1.94e-08;3!CL:0000357;2.34e-07;6!CL:0000114;2.34e-07;6|ontology_enrichment_disease=DOID:1749!4.14e-12!14;DOID:5093!4.57e-07!4;DOID:1612!4.57e-07!4;DOID:305!7.05e-07!106|ontology_enrichment_disease_v019=DOID:5093;2.60e-11;4!DOID:1612;2.60e-11;4!DOID:1749;3.14e-08;14|ontology_enrichment_disease_v019_2=DOID:5093,2.52e-11,4;DOID:1612,2.52e-11,4;DOID:1749,2.84e-08,14|ontology_enrichment_uberon=UBERON:0004119!2.66e-21!169;UBERON:0000925!2.66e-21!169;UBERON:0006595!2.66e-21!169;UBERON:0001004!1.61e-15!72;UBERON:0001007!8.97e-14!155;UBERON:0001555!8.97e-14!155;UBERON:0007026!8.97e-14!155;UBERON:0000077!5.28e-12!130;UBERON:0000065!2.71e-11!53;UBERON:0000161!3.13e-11!35;UBERON:0005911!5.31e-10!82;UBERON:0000166!8.46e-10!21;UBERON:0004921!8.72e-10!129;UBERON:0004185!8.72e-10!129;UBERON:0005631!1.67e-09!14;UBERON:0000158!1.67e-09!14;UBERON:0005153!2.07e-09!37;UBERON:0005178!5.81e-09!34;UBERON:0002224!5.81e-09!34;UBERON:0000464!6.44e-09!104;UBERON:0005181!1.46e-08!35;UBERON:0007023!1.74e-08!115;UBERON:0001041!2.36e-08!98;UBERON:0006554!4.00e-08!44;UBERON:0001008!8.06e-08!45;UBERON:0000365!8.36e-08!5;UBERON:0000974!9.43e-08!10;UBERON:0000466!1.19e-07!126;UBERON:0000165!1.21e-07!28;UBERON:0000930!1.21e-07!28;UBERON:0000915!1.40e-07!52;UBERON:0000062!1.55e-07!511;UBERON:0003729!1.64e-07!5;UBERON:0004175!1.79e-07!25;UBERON:0005157!3.72e-07!51;UBERON:0007196!4.65e-07!14;UBERON:0001558!4.65e-07!14;UBERON:0000468!7.11e-07!659;UBERON:0000922!9.99e-07!612|ontology_enrichment_uberon_v019=UBERON:0000974;2.90e-10;6!UBERON:0007196;1.35e-09;15!UBERON:0001558;1.35e-09;15!UBERON:0005178;4.29e-09;34!UBERON:0002224;4.29e-09;34!UBERON:0006947;7.14e-09;3!UBERON:0004054;7.14e-09;3!UBERON:0000161;7.97e-09;19!UBERON:0000166;7.97e-09;19!UBERON:0004815;2.91e-08;3!UBERON:0002031;2.91e-08;3!UBERON:0005181;5.44e-08;35!UBERON:0000915;2.46e-07;52!UBERON:0000065;4.94e-07;44!UBERON:0000165;7.61e-07;28!UBERON:0005904;9.93e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.58e-14,160;UBERON:0000925,1.58e-14,160;UBERON:0006595,1.58e-14,160;UBERON:0001004,6.00e-13,74;UBERON:0000915,3.92e-10,52;UBERON:0005178,9.69e-10,34;UBERON:0002224,9.69e-10,34;UBERON:0007196,1.73e-09,15;UBERON:0001558,1.73e-09,15;UBERON:0005181,2.24e-09,35;UBERON:0000065,4.05e-09,54;UBERON:0006947,6.63e-09,3;UBERON:0004054,6.63e-09,3;UBERON:0004815,1.49e-08,3;UBERON:0002031,1.49e-08,3;UBERON:0001007,2.32e-08,145;UBERON:0001555,2.32e-08,145;UBERON:0007026,2.32e-08,145;UBERON:0000166,1.92e-07,22;UBERON:0005157,3.44e-07,47;UBERON:0005153,4.99e-07,37;UBERON:0005904,9.41e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,3.48900583986214,1.74753097704138,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,1.8072355126695,5.17655614233503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,4.73583874780305,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.41359888642308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,1.09098448236334,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41450627898976,3.37205259772859,2.51322431029077,2.40729957412177,0,0,0,0,0,0,0,0,3.95102198979638,3.43394464837949,0,0,0,0,0.3359642563977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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64218 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10729 | |||
|TSSclassifier=S | |||
|UniProt=Q5TCJ6,B3KR76,Q9H3S1 | |||
|association_with_transcript=-10bp_to_ENST00000368284,NM_001193302_5end | |||
|description=CAGE_peak_4_at_SEMA4A_5end | |||
|id=chr1:156123347..156123358,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.45e-19!43;CL:0000066!1.14e-16!254;CL:0000223!5.62e-13!59;CL:0002368!3.38e-12!13;CL:0002159!3.24e-08!13;CL:0002202!1.34e-07!9;CL:0002632!1.34e-07!9;CL:0002251!4.29e-07!21;CL:0000244!7.55e-07!4;CL:0000731!7.55e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.41e-21;13!CL:0002076;1.38e-16;42!CL:0002202;5.78e-13;9!CL:0002632;5.78e-13;9!CL:0002159;8.24e-11;14!CL:0000307;1.94e-08;3!CL:0002328;2.91e-08;3!CL:0000240;2.34e-07;6!CL:0000311;2.34e-07;6!CL:0000079;2.34e-07;6!CL:0000237;2.34e-07;6!CL:0000362;2.47e-07;9!CL:0000244;4.90e-07;4!CL:0000731;4.90e-07;4!CL:0002251;7.42e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,4.21e-21,13;CL:0002076,1.24e-20,42;CL:0000066,4.97e-15,253;CL:0000223,5.66e-15,58;CL:0002202,6.71e-13,9;CL:0002632,6.71e-13,9;CL:0002159,6.12e-11,14;CL:0002328,1.49e-08,3;CL:0000068,3.91e-08,3;CL:0000069,3.91e-08,3;CL:0000307,3.91e-08,3;CL:0000377,3.91e-08,3;CL:0000240,2.09e-07,6;CL:0000311,2.09e-07,6;CL:0000079,2.09e-07,6;CL:0000237,2.09e-07,6;CL:0000036,2.09e-07,6;CL:0000357,2.09e-07,6;CL:0000114,2.09e-07,6;CL:0000362,2.26e-07,9;CL:0000244,5.43e-07,4;CL:0000731,5.43e-07,4;CL:0002251,6.94e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;1.87e-09;58!CL:0000377;1.94e-08;3!CL:0000357;2.34e-07;6!CL:0000114;2.34e-07;6 | |||
|ontology_enrichment_disease=DOID:1749!4.14e-12!14;DOID:5093!4.57e-07!4;DOID:1612!4.57e-07!4;DOID:305!7.05e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:5093;2.60e-11;4!DOID:1612;2.60e-11;4!DOID:1749;3.14e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.52e-11,4;DOID:1612,2.52e-11,4;DOID:1749,2.84e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.66e-21!169;UBERON:0000925!2.66e-21!169;UBERON:0006595!2.66e-21!169;UBERON:0001004!1.61e-15!72;UBERON:0001007!8.97e-14!155;UBERON:0001555!8.97e-14!155;UBERON:0007026!8.97e-14!155;UBERON:0000077!5.28e-12!130;UBERON:0000065!2.71e-11!53;UBERON:0000161!3.13e-11!35;UBERON:0005911!5.31e-10!82;UBERON:0000166!8.46e-10!21;UBERON:0004921!8.72e-10!129;UBERON:0004185!8.72e-10!129;UBERON:0005631!1.67e-09!14;UBERON:0000158!1.67e-09!14;UBERON:0005153!2.07e-09!37;UBERON:0005178!5.81e-09!34;UBERON:0002224!5.81e-09!34;UBERON:0000464!6.44e-09!104;UBERON:0005181!1.46e-08!35;UBERON:0007023!1.74e-08!115;UBERON:0001041!2.36e-08!98;UBERON:0006554!4.00e-08!44;UBERON:0001008!8.06e-08!45;UBERON:0000365!8.36e-08!5;UBERON:0000974!9.43e-08!10;UBERON:0000466!1.19e-07!126;UBERON:0000165!1.21e-07!28;UBERON:0000930!1.21e-07!28;UBERON:0000915!1.40e-07!52;UBERON:0000062!1.55e-07!511;UBERON:0003729!1.64e-07!5;UBERON:0004175!1.79e-07!25;UBERON:0005157!3.72e-07!51;UBERON:0007196!4.65e-07!14;UBERON:0001558!4.65e-07!14;UBERON:0000468!7.11e-07!659;UBERON:0000922!9.99e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0000974;2.90e-10;6!UBERON:0007196;1.35e-09;15!UBERON:0001558;1.35e-09;15!UBERON:0005178;4.29e-09;34!UBERON:0002224;4.29e-09;34!UBERON:0006947;7.14e-09;3!UBERON:0004054;7.14e-09;3!UBERON:0000161;7.97e-09;19!UBERON:0000166;7.97e-09;19!UBERON:0004815;2.91e-08;3!UBERON:0002031;2.91e-08;3!UBERON:0005181;5.44e-08;35!UBERON:0000915;2.46e-07;52!UBERON:0000065;4.94e-07;44!UBERON:0000165;7.61e-07;28!UBERON:0005904;9.93e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.58e-14,160;UBERON:0000925,1.58e-14,160;UBERON:0006595,1.58e-14,160;UBERON:0001004,6.00e-13,74;UBERON:0000915,3.92e-10,52;UBERON:0005178,9.69e-10,34;UBERON:0002224,9.69e-10,34;UBERON:0007196,1.73e-09,15;UBERON:0001558,1.73e-09,15;UBERON:0005181,2.24e-09,35;UBERON:0000065,4.05e-09,54;UBERON:0006947,6.63e-09,3;UBERON:0004054,6.63e-09,3;UBERON:0004815,1.49e-08,3;UBERON:0002031,1.49e-08,3;UBERON:0001007,2.32e-08,145;UBERON:0001555,2.32e-08,145;UBERON:0007026,2.32e-08,145;UBERON:0000166,1.92e-07,22;UBERON:0005157,3.44e-07,47;UBERON:0005153,4.99e-07,37;UBERON:0005904,9.41e-07,4 | |||
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|short_description=p4@SEMA4A | |||
}} |
Revision as of 00:51, 12 September 2013
Short description: | p4@SEMA4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SEMA4A_5end |
Coexpression cluster: | NA |
Association with transcript: | -10bp_to_ENST00000368284, NM_001193302_5end |
EntrezGene: | SEMA4A |
HGNC: | 10729 |
UniProt: | Q5TCJ6B3KR76Q9H3S1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 4.21e-21 | 13 |
endo-epithelial cell | 1.24e-20 | 42 |
epithelial cell | 4.97e-15 | 253 |
endodermal cell | 5.66e-15 | 58 |
epithelial cell of tracheobronchial tree | 6.71e-13 | 9 |
epithelial cell of lower respiratory tract | 6.71e-13 | 9 |
general ecto-epithelial cell | 6.12e-11 | 14 |
bronchial epithelial cell | 1.49e-08 | 3 |
duct epithelial cell | 3.91e-08 | 3 |
branched duct epithelial cell | 3.91e-08 | 3 |
tracheal epithelial cell | 3.91e-08 | 3 |
tracheoblast | 3.91e-08 | 3 |
stratified squamous epithelial cell | 2.09e-07 | 6 |
keratin accumulating cell | 2.09e-07 | 6 |
stratified epithelial cell | 2.09e-07 | 6 |
keratinizing barrier epithelial cell | 2.09e-07 | 6 |
epithelial fate stem cell | 2.09e-07 | 6 |
stratified epithelial stem cell | 2.09e-07 | 6 |
surface ectodermal cell | 2.09e-07 | 6 |
epidermal cell | 2.26e-07 | 9 |
transitional epithelial cell | 5.43e-07 | 4 |
urothelial cell | 5.43e-07 | 4 |
epithelial cell of alimentary canal | 6.94e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.58e-14 | 160 |
endoderm | 1.58e-14 | 160 |
presumptive endoderm | 1.58e-14 | 160 |
respiratory system | 6.00e-13 | 74 |
thoracic segment of trunk | 3.92e-10 | 52 |
thoracic cavity element | 9.69e-10 | 34 |
thoracic cavity | 9.69e-10 | 34 |
tracheobronchial tree | 1.73e-09 | 15 |
lower respiratory tract | 1.73e-09 | 15 |
thoracic segment organ | 2.24e-09 | 35 |
respiratory tract | 4.05e-09 | 54 |
male genital duct | 6.63e-09 | 3 |
internal male genitalia | 6.63e-09 | 3 |
lower respiratory tract epithelium | 1.49e-08 | 3 |
epithelium of bronchus | 1.49e-08 | 3 |
digestive system | 2.32e-08 | 145 |
digestive tract | 2.32e-08 | 145 |
primitive gut | 2.32e-08 | 145 |
oral opening | 1.92e-07 | 22 |
epithelial fold | 3.44e-07 | 47 |
epithelial bud | 4.99e-07 | 37 |
duct of male reproductive system | 9.41e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.52e-11 | 4 |
breast cancer | 2.52e-11 | 4 |
squamous cell carcinoma | 2.84e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.