FFCP PHASE1:Hg19::chr19:52298399..52298445,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2359|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3828|TSSclassifier=S|UniProt=P25089,Q6L5J4|association_with_transcript=0bp_to_ENST00000339223,NM_002030,uc002pxt.1_5end|coexpression_cluster_id=C847|description=CAGE_peak_1_at_FPR3_5end|id=chr19:52298399..52298445,+|ontology_enrichment_celltype=CL:0000557!1.01e-35!71;CL:0002009!9.93e-35!65;CL:0000839!3.98e-33!70;CL:0002194!5.87e-33!63;CL:0000576!5.87e-33!63;CL:0000040!5.87e-33!63;CL:0000559!5.87e-33!63;CL:0002057!2.31e-31!42;CL:0000766!1.28e-29!76;CL:0000860!4.70e-28!45;CL:0000763!3.24e-27!112;CL:0000049!3.24e-27!112;CL:0000738!4.11e-15!140;CL:0002031!1.02e-14!124;CL:0000037!4.42e-14!172;CL:0000566!4.42e-14!172;CL:0002032!1.35e-13!165;CL:0000837!1.35e-13!165;CL:0002087!2.08e-13!119;CL:0000988!6.81e-12!182|ontology_enrichment_celltype_v019=CL:0000473;6.84e-37;39!CL:0000234;6.84e-37;39!CL:0000860;3.77e-36;33!CL:0002057;3.77e-36;33!CL:0000576;4.16e-24;48!CL:0000766;1.05e-16;69!CL:0000763;8.37e-12;100!CL:0000235;4.19e-10;6!CL:0000990;2.36e-07;8!CL:0000840;7.51e-07;5|ontology_enrichment_celltype_v019_2=CL:0000557,8.90e-48,67;CL:0002009,4.04e-47,61;CL:0002194,1.36e-44,59;CL:0000576,1.36e-44,59;CL:0000040,1.36e-44,59;CL:0000559,1.36e-44,59;CL:0000839,2.61e-44,66;CL:0000473,3.54e-43,48;CL:0000234,3.54e-43,48;CL:0000766,4.26e-39,72;CL:0000860,8.08e-35,42;CL:0002057,8.08e-35,42;CL:0000763,5.26e-33,108;CL:0000049,5.26e-33,108;CL:0002031,1.68e-19,120;CL:0000738,1.78e-17,136;CL:0002087,1.64e-16,115;CL:0002032,2.53e-16,161;CL:0000837,2.53e-16,161;CL:0000037,1.73e-15,168;CL:0000988,9.31e-14,177;CL:0000235,4.21e-10,6;CL:0000990,2.54e-07,8;CL:0000840,7.63e-07,5;CL:0001029,7.63e-07,5|ontology_enrichment_development_v019=CL:0002057;1.12e-25;42!CL:0000049;3.78e-11;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.40e-43!115;UBERON:0002390!2.40e-30!102;UBERON:0003061!2.40e-30!102;UBERON:0002371!6.80e-29!80;UBERON:0002193!1.85e-27!112;UBERON:0001474!3.43e-25!86;UBERON:0002405!1.14e-22!115;UBERON:0004765!3.55e-20!101;UBERON:0001434!3.55e-20!101;UBERON:0003081!3.72e-12!216;UBERON:0000062!1.08e-11!511;UBERON:0002204!1.46e-10!167;UBERON:0002616!6.50e-09!59;UBERON:0000479!1.05e-08!787;UBERON:0001049!1.18e-08!57;UBERON:0005068!1.18e-08!57;UBERON:0006241!1.18e-08!57;UBERON:0007135!1.18e-08!57;UBERON:0000467!1.73e-08!625;UBERON:0000480!2.19e-08!626;UBERON:0000468!1.05e-07!659;UBERON:0001017!1.67e-07!82;UBERON:0003080!1.80e-07!42;UBERON:0000923!2.30e-07!604;UBERON:0005291!2.30e-07!604;UBERON:0006598!2.30e-07!604;UBERON:0002532!2.30e-07!604;UBERON:0002050!2.86e-07!605;UBERON:0005423!2.86e-07!605;UBERON:0000955!3.13e-07!69;UBERON:0006238!3.13e-07!69;UBERON:0000922!3.16e-07!612;UBERON:0005743!3.36e-07!86;UBERON:0002780!5.51e-07!41;UBERON:0001890!5.51e-07!41;UBERON:0006240!5.51e-07!41|ontology_enrichment_uberon_v019=UBERON:0007023;8.60e-09;114|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.20e-40,76;UBERON:0002390,9.22e-40,98;UBERON:0003061,9.22e-40,98;UBERON:0002405,3.48e-38,93;UBERON:0002193,4.30e-37,108;UBERON:0001474,1.41e-35,82;UBERON:0007023,1.12e-33,114;UBERON:0004765,9.15e-31,90;UBERON:0001434,7.19e-26,100;UBERON:0003081,4.49e-18,203;UBERON:0002204,4.00e-13,167;UBERON:0000926,2.62e-09,315;UBERON:0004120,2.62e-09,315;UBERON:0006603,2.62e-09,315;UBERON:0000923,3.02e-08,560;UBERON:0010316,3.02e-08,560;UBERON:0005291,3.02e-08,560;UBERON:0006598,3.02e-08,560;UBERON:0010317,3.02e-08,560;UBERON:0002532,3.02e-08,560;UBERON:0002050,5.85e-08,564;UBERON:0005423,6.26e-08,581;UBERON:0000922,1.50e-07,592;UBERON:0000479,4.40e-07,773|phase1_expression=0.181678379270557,0,0.986680828671798,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0.200544447470142,0.868043482863407,106.807681212444,62.835371207682,80.8787282371346,193.81585229316,139.058347277482,110.133163779269,84.1393113598578,67.4315336355794,33.1385816857761,22.1523142088056,29.4584812508466,12.7700404139836,21.0294865249337,18.719055823931,5.41705946377367,137.981634884729,141.092479579906,114.159530098103,97.6407616663179,105.906578935111,51.1469700639233,43.8702229248332,57.0466060797867,34.5242047931482,18.863600510858,14.7520158419696,14.9477339758938,14.0699252543776,17.7304192262868,12.1625753034865,24.2159801053348,19.8869923433285,12.9749578850763,6.76016916198214,8.92938059853183,3.35453832813401,1.46027220490444,2.85336096398862,0.48217676009124,0.285012743741249,0.39783335439818,0.182664153764634,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0.651083453856419,0,0.602300476311091,0.639933055772092,0,1.65744076430812,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0.263504357079378,6.15601654839249,0,0,161.300054646378,199.204419470362,237.595875447212,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4969719516953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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2359 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3828 | |||
|TSSclassifier=S | |||
|UniProt=P25089,Q6L5J4 | |||
|association_with_transcript=0bp_to_ENST00000339223,NM_002030,uc002pxt.1_5end | |||
|coexpression_cluster_id=C847 | |||
|description=CAGE_peak_1_at_FPR3_5end | |||
|id=chr19:52298399..52298445,+ | |||
|ontology_enrichment_celltype=CL:0000557!1.01e-35!71;CL:0002009!9.93e-35!65;CL:0000839!3.98e-33!70;CL:0002194!5.87e-33!63;CL:0000576!5.87e-33!63;CL:0000040!5.87e-33!63;CL:0000559!5.87e-33!63;CL:0002057!2.31e-31!42;CL:0000766!1.28e-29!76;CL:0000860!4.70e-28!45;CL:0000763!3.24e-27!112;CL:0000049!3.24e-27!112;CL:0000738!4.11e-15!140;CL:0002031!1.02e-14!124;CL:0000037!4.42e-14!172;CL:0000566!4.42e-14!172;CL:0002032!1.35e-13!165;CL:0000837!1.35e-13!165;CL:0002087!2.08e-13!119;CL:0000988!6.81e-12!182 | |||
|ontology_enrichment_celltype_v019=CL:0000473;6.84e-37;39!CL:0000234;6.84e-37;39!CL:0000860;3.77e-36;33!CL:0002057;3.77e-36;33!CL:0000576;4.16e-24;48!CL:0000766;1.05e-16;69!CL:0000763;8.37e-12;100!CL:0000235;4.19e-10;6!CL:0000990;2.36e-07;8!CL:0000840;7.51e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,8.90e-48,67;CL:0002009,4.04e-47,61;CL:0002194,1.36e-44,59;CL:0000576,1.36e-44,59;CL:0000040,1.36e-44,59;CL:0000559,1.36e-44,59;CL:0000839,2.61e-44,66;CL:0000473,3.54e-43,48;CL:0000234,3.54e-43,48;CL:0000766,4.26e-39,72;CL:0000860,8.08e-35,42;CL:0002057,8.08e-35,42;CL:0000763,5.26e-33,108;CL:0000049,5.26e-33,108;CL:0002031,1.68e-19,120;CL:0000738,1.78e-17,136;CL:0002087,1.64e-16,115;CL:0002032,2.53e-16,161;CL:0000837,2.53e-16,161;CL:0000037,1.73e-15,168;CL:0000988,9.31e-14,177;CL:0000235,4.21e-10,6;CL:0000990,2.54e-07,8;CL:0000840,7.63e-07,5;CL:0001029,7.63e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;1.12e-25;42!CL:0000049;3.78e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.40e-43!115;UBERON:0002390!2.40e-30!102;UBERON:0003061!2.40e-30!102;UBERON:0002371!6.80e-29!80;UBERON:0002193!1.85e-27!112;UBERON:0001474!3.43e-25!86;UBERON:0002405!1.14e-22!115;UBERON:0004765!3.55e-20!101;UBERON:0001434!3.55e-20!101;UBERON:0003081!3.72e-12!216;UBERON:0000062!1.08e-11!511;UBERON:0002204!1.46e-10!167;UBERON:0002616!6.50e-09!59;UBERON:0000479!1.05e-08!787;UBERON:0001049!1.18e-08!57;UBERON:0005068!1.18e-08!57;UBERON:0006241!1.18e-08!57;UBERON:0007135!1.18e-08!57;UBERON:0000467!1.73e-08!625;UBERON:0000480!2.19e-08!626;UBERON:0000468!1.05e-07!659;UBERON:0001017!1.67e-07!82;UBERON:0003080!1.80e-07!42;UBERON:0000923!2.30e-07!604;UBERON:0005291!2.30e-07!604;UBERON:0006598!2.30e-07!604;UBERON:0002532!2.30e-07!604;UBERON:0002050!2.86e-07!605;UBERON:0005423!2.86e-07!605;UBERON:0000955!3.13e-07!69;UBERON:0006238!3.13e-07!69;UBERON:0000922!3.16e-07!612;UBERON:0005743!3.36e-07!86;UBERON:0002780!5.51e-07!41;UBERON:0001890!5.51e-07!41;UBERON:0006240!5.51e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;8.60e-09;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.20e-40,76;UBERON:0002390,9.22e-40,98;UBERON:0003061,9.22e-40,98;UBERON:0002405,3.48e-38,93;UBERON:0002193,4.30e-37,108;UBERON:0001474,1.41e-35,82;UBERON:0007023,1.12e-33,114;UBERON:0004765,9.15e-31,90;UBERON:0001434,7.19e-26,100;UBERON:0003081,4.49e-18,203;UBERON:0002204,4.00e-13,167;UBERON:0000926,2.62e-09,315;UBERON:0004120,2.62e-09,315;UBERON:0006603,2.62e-09,315;UBERON:0000923,3.02e-08,560;UBERON:0010316,3.02e-08,560;UBERON:0005291,3.02e-08,560;UBERON:0006598,3.02e-08,560;UBERON:0010317,3.02e-08,560;UBERON:0002532,3.02e-08,560;UBERON:0002050,5.85e-08,564;UBERON:0005423,6.26e-08,581;UBERON:0000922,1.50e-07,592;UBERON:0000479,4.40e-07,773 | |||
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| |||
|short_description=p1@FPR3 | |||
}} |
Revision as of 22:08, 11 September 2013
Short description: | p1@FPR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_FPR3_5end |
Coexpression cluster: | C847_Monocytederived_CD14_Macrophage_Dendritic_immature_adipose_lung |
Association with transcript: | 0bp_to_ENST00000339223, NM_002030, uc002pxt.1_5end |
EntrezGene: | FPR3 |
HGNC: | 3828 |
UniProt: | P25089Q6L5J4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 8.90e-48 | 67 |
macrophage dendritic cell progenitor | 4.04e-47 | 61 |
monopoietic cell | 1.36e-44 | 59 |
monocyte | 1.36e-44 | 59 |
monoblast | 1.36e-44 | 59 |
promonocyte | 1.36e-44 | 59 |
myeloid lineage restricted progenitor cell | 2.61e-44 | 66 |
defensive cell | 3.54e-43 | 48 |
phagocyte | 3.54e-43 | 48 |
myeloid leukocyte | 4.26e-39 | 72 |
classical monocyte | 8.08e-35 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.08e-35 | 42 |
myeloid cell | 5.26e-33 | 108 |
common myeloid progenitor | 5.26e-33 | 108 |
hematopoietic lineage restricted progenitor cell | 1.68e-19 | 120 |
leukocyte | 1.78e-17 | 136 |
nongranular leukocyte | 1.64e-16 | 115 |
hematopoietic oligopotent progenitor cell | 2.53e-16 | 161 |
hematopoietic multipotent progenitor cell | 2.53e-16 | 161 |
hematopoietic stem cell | 1.73e-15 | 168 |
hematopoietic cell | 9.31e-14 | 177 |
macrophage | 4.21e-10 | 6 |
conventional dendritic cell | 2.54e-07 | 8 |
immature conventional dendritic cell | 7.63e-07 | 5 |
common dendritic progenitor | 7.63e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.20e-40 | 76 |
hematopoietic system | 9.22e-40 | 98 |
blood island | 9.22e-40 | 98 |
immune system | 3.48e-38 | 93 |
hemolymphoid system | 4.30e-37 | 108 |
bone element | 1.41e-35 | 82 |
adult organism | 1.12e-33 | 114 |
skeletal element | 9.15e-31 | 90 |
skeletal system | 7.19e-26 | 100 |
lateral plate mesoderm | 4.49e-18 | 203 |
musculoskeletal system | 4.00e-13 | 167 |
mesoderm | 2.62e-09 | 315 |
mesoderm-derived structure | 2.62e-09 | 315 |
presumptive mesoderm | 2.62e-09 | 315 |
germ layer | 3.02e-08 | 560 |
germ layer / neural crest | 3.02e-08 | 560 |
embryonic tissue | 3.02e-08 | 560 |
presumptive structure | 3.02e-08 | 560 |
germ layer / neural crest derived structure | 3.02e-08 | 560 |
epiblast (generic) | 3.02e-08 | 560 |
embryonic structure | 5.85e-08 | 564 |
developing anatomical structure | 6.26e-08 | 581 |
embryo | 1.50e-07 | 592 |
tissue | 4.40e-07 | 773 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.