FFCP PHASE1:Hg19::chr19:45323408..45323478,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C924|description=CAGE_peak_at_chr19:45323408..45323478,+|id=chr19:45323408..45323478,+|ontology_enrichment_celltype=CL:0000066!5.69e-39!254;CL:0000223!2.89e-16!59;CL:0002076!1.90e-12!43;CL:0000076!4.30e-10!62;CL:0002321!7.64e-10!248;CL:0000220!2.10e-09!246;CL:0002251!1.71e-07!21|ontology_enrichment_celltype_v019=CL:0002076;3.93e-10;42!CL:0002251;3.13e-08;20!CL:0000077;7.56e-08;19|ontology_enrichment_celltype_v019_2=CL:0000066,1.17e-37,253;CL:0000223,8.11e-16,58;CL:0000076,1.33e-14,63;CL:0002076,4.56e-12,42;CL:0002251,3.54e-08,20;CL:0000077,7.42e-08,19;CL:0002321,9.15e-07,250|ontology_enrichment_development_v019=CL:0000223;9.98e-09;58!UBERON:0001041;8.44e-08;30|ontology_enrichment_disease=DOID:305!5.59e-28!106;DOID:0050687!9.33e-24!143;DOID:162!7.16e-12!235;DOID:14566!3.73e-11!239;DOID:299!3.69e-10!25;DOID:7!8.31e-09!39;DOID:1749!2.05e-08!14|ontology_enrichment_disease_v019=DOID:299;6.17e-12;25!DOID:1749;3.02e-11;14!DOID:305;5.52e-09;106!DOID:7;2.95e-07;39|ontology_enrichment_disease_v019_2=DOID:305,1.14e-31,106;DOID:0050687,1.46e-24,143;DOID:162,1.07e-13,235;DOID:14566,7.63e-13,239;DOID:299,2.32e-12,25;DOID:1749,5.33e-11,14;DOID:7,6.55e-09,39|ontology_enrichment_uberon=UBERON:0004119!1.38e-20!169;UBERON:0000925!1.38e-20!169;UBERON:0006595!1.38e-20!169;UBERON:0001007!8.46e-18!155;UBERON:0001555!8.46e-18!155;UBERON:0007026!8.46e-18!155;UBERON:0005911!7.03e-16!82;UBERON:0004921!2.10e-15!129;UBERON:0004185!2.10e-15!129;UBERON:0000481!3.76e-14!347;UBERON:0001048!1.38e-11!168;UBERON:0000077!2.11e-11!130;UBERON:0005177!2.37e-11!107;UBERON:0000468!4.88e-11!659;UBERON:0000483!2.86e-10!309;UBERON:0005157!3.36e-10!51;UBERON:0005153!5.62e-10!37;UBERON:0000475!5.96e-10!365;UBERON:0000119!8.29e-10!312;UBERON:0000466!9.66e-10!126;UBERON:0003929!1.29e-09!54;UBERON:0001041!1.01e-08!98;UBERON:0003104!1.20e-08!238;UBERON:0009142!1.20e-08!238;UBERON:0001008!1.32e-08!45;UBERON:0009569!1.53e-08!113;UBERON:0006554!2.37e-08!44;UBERON:0000062!3.90e-08!511;UBERON:0002530!8.13e-08!59;UBERON:0000922!8.13e-08!612;UBERON:0001004!1.97e-07!72;UBERON:0000464!2.25e-07!104;UBERON:0003101!8.00e-07!22;UBERON:0000079!8.00e-07!22;UBERON:0000344!9.48e-07!12|ontology_enrichment_uberon_v019=UBERON:0005911;9.55e-07;36|ontology_enrichment_uberon_v019_2=UBERON:0005911,3.28e-16,82;UBERON:0004119,9.62e-13,160;UBERON:0000925,9.62e-13,160;UBERON:0006595,9.62e-13,160;UBERON:0001007,9.42e-10,145;UBERON:0001555,9.42e-10,145;UBERON:0007026,9.42e-10,145;UBERON:0005153,1.51e-09,37;UBERON:0005157,2.80e-09,47;UBERON:0003929,3.74e-09,54;UBERON:0004921,1.41e-07,118;UBERON:0005177,2.17e-07,101;UBERON:0002530,4.28e-07,59|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,1.39560233594486,0,0,0.247532705920093,0,0.672325146451775,1.20538905604795,0.730310090387373,0,1.10808952269109,0.408001382488506,1.88072832886853,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0.919421224478927,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.12786256184353,2.1686349143074,0.50133791063589,2.89693037921647,0,0,1.03988298880475,1.55210578223795,0.966182642624386,1.37528029272598,2.5500670180478,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0.838998872419812,2.20094433552054,0.208994966536811,0.258416759169329,0,0,0,0,1.22031028774085,0.735326160691737,1.62028389576352,0.892997282840798,1.12264686313085,1.0135033243499,0,0,0.183201743930407,0,0,4.36094052142534,0,0.12663051166458,0,2.29469296599051,0.354668382198357,0,0,0.49333509683432,0,0,0.163461903113459,0,0,0.937285727335186,0,0,0,0.117434498643765,0,0,0.204154171254893,0.368502951935304,0.206651562351531,0,0,0.910161361938026,0,0.168336113954066,0.375355559615893,0,0,0,0,0.226864366320042,0.89694817844431,0.427114777637135,0,0.300091096084402,0.206105058476878,1.03056216018252,0.18611685633159,0.168776332241266,0.0974370051611986,0.757301322732344,0.0920498986422993,0.80823028409406,1.42003837006646,0,1.18692414617341,1.15956511897978,1.63647672354501,0.860413786167011,2.07355300420312,1.45782745153634,1.74290914304278,1.86589899027667,2.52320850875628,4.37972830890996,0,0,0,0,0,1.0647612003586,0.674338760312407,0.723033089650446,1.10293972732394,0.435758888184812,1.18635309555548,1.21348177344148,1.37355025587742,0.38474715694639,0.738155454624648,0,0.4115740113314,0,3.80265104465493,0.982827216677626,1.77236972004421,0,8.36321382093172,2.91665277507493,7.13376855156066,2.24803506515239,5.2275065654048,13.5179129931453,0.651616610620649,0,0,2.08674728955138,0.234817388471643,0,0.462985512576611,0.951270761172991,7.90204397959275,4.29243081047436,0,0,0,0,1.34385702559088,1.41775097242386,1.61205340865127,4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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C924 | |||
|description=CAGE_peak_at_chr19:45323408..45323478,+ | |||
|id=chr19:45323408..45323478,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.69e-39!254;CL:0000223!2.89e-16!59;CL:0002076!1.90e-12!43;CL:0000076!4.30e-10!62;CL:0002321!7.64e-10!248;CL:0000220!2.10e-09!246;CL:0002251!1.71e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.93e-10;42!CL:0002251;3.13e-08;20!CL:0000077;7.56e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.17e-37,253;CL:0000223,8.11e-16,58;CL:0000076,1.33e-14,63;CL:0002076,4.56e-12,42;CL:0002251,3.54e-08,20;CL:0000077,7.42e-08,19;CL:0002321,9.15e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000223;9.98e-09;58!UBERON:0001041;8.44e-08;30 | |||
|ontology_enrichment_disease=DOID:305!5.59e-28!106;DOID:0050687!9.33e-24!143;DOID:162!7.16e-12!235;DOID:14566!3.73e-11!239;DOID:299!3.69e-10!25;DOID:7!8.31e-09!39;DOID:1749!2.05e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:299;6.17e-12;25!DOID:1749;3.02e-11;14!DOID:305;5.52e-09;106!DOID:7;2.95e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.14e-31,106;DOID:0050687,1.46e-24,143;DOID:162,1.07e-13,235;DOID:14566,7.63e-13,239;DOID:299,2.32e-12,25;DOID:1749,5.33e-11,14;DOID:7,6.55e-09,39 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.38e-20!169;UBERON:0000925!1.38e-20!169;UBERON:0006595!1.38e-20!169;UBERON:0001007!8.46e-18!155;UBERON:0001555!8.46e-18!155;UBERON:0007026!8.46e-18!155;UBERON:0005911!7.03e-16!82;UBERON:0004921!2.10e-15!129;UBERON:0004185!2.10e-15!129;UBERON:0000481!3.76e-14!347;UBERON:0001048!1.38e-11!168;UBERON:0000077!2.11e-11!130;UBERON:0005177!2.37e-11!107;UBERON:0000468!4.88e-11!659;UBERON:0000483!2.86e-10!309;UBERON:0005157!3.36e-10!51;UBERON:0005153!5.62e-10!37;UBERON:0000475!5.96e-10!365;UBERON:0000119!8.29e-10!312;UBERON:0000466!9.66e-10!126;UBERON:0003929!1.29e-09!54;UBERON:0001041!1.01e-08!98;UBERON:0003104!1.20e-08!238;UBERON:0009142!1.20e-08!238;UBERON:0001008!1.32e-08!45;UBERON:0009569!1.53e-08!113;UBERON:0006554!2.37e-08!44;UBERON:0000062!3.90e-08!511;UBERON:0002530!8.13e-08!59;UBERON:0000922!8.13e-08!612;UBERON:0001004!1.97e-07!72;UBERON:0000464!2.25e-07!104;UBERON:0003101!8.00e-07!22;UBERON:0000079!8.00e-07!22;UBERON:0000344!9.48e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0005911;9.55e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,3.28e-16,82;UBERON:0004119,9.62e-13,160;UBERON:0000925,9.62e-13,160;UBERON:0006595,9.62e-13,160;UBERON:0001007,9.42e-10,145;UBERON:0001555,9.42e-10,145;UBERON:0007026,9.42e-10,145;UBERON:0005153,1.51e-09,37;UBERON:0005157,2.80e-09,47;UBERON:0003929,3.74e-09,54;UBERON:0004921,1.41e-07,118;UBERON:0005177,2.17e-07,101;UBERON:0002530,4.28e-07,59 | |||
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| |||
|short_description=p@chr19:45323408..45323478,+ | |||
}} |
Revision as of 21:08, 11 September 2013
Short description: | p@chr19:45323408..45323478, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:45323408..45323478, + |
Coexpression cluster: | C924_oral_cervical_smallcell_serous_Keratinocyte_Prostate_epidermoid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.17e-37 | 253 |
endodermal cell | 8.11e-16 | 58 |
squamous epithelial cell | 1.33e-14 | 63 |
endo-epithelial cell | 4.56e-12 | 42 |
epithelial cell of alimentary canal | 3.54e-08 | 20 |
mesothelial cell | 7.42e-08 | 19 |
embryonic cell | 9.15e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 3.28e-16 | 82 |
endoderm-derived structure | 9.62e-13 | 160 |
endoderm | 9.62e-13 | 160 |
presumptive endoderm | 9.62e-13 | 160 |
digestive system | 9.42e-10 | 145 |
digestive tract | 9.42e-10 | 145 |
primitive gut | 9.42e-10 | 145 |
epithelial bud | 1.51e-09 | 37 |
epithelial fold | 2.80e-09 | 47 |
gut epithelium | 3.74e-09 | 54 |
subdivision of digestive tract | 1.41e-07 | 118 |
trunk region element | 2.17e-07 | 101 |
gland | 4.28e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.14e-31 | 106 |
cell type cancer | 1.46e-24 | 143 |
cancer | 1.07e-13 | 235 |
disease of cellular proliferation | 7.63e-13 | 239 |
adenocarcinoma | 2.32e-12 | 25 |
squamous cell carcinoma | 5.33e-11 | 14 |
disease of anatomical entity | 6.55e-09 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.