FFCP PHASE1:Hg19::chr19:43708378..43708400,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5672|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9521|TSSclassifier=W|UniProt=|association_with_transcript=-175bp_to_ENST00000495316_5end|coexpression_cluster_id=C34|description=CAGE_peak_5_at_PSG4_5end|id=chr19:43708378..43708400,-|ontology_enrichment_celltype=CL:0000077!7.60e-11!19;CL:0002620!1.50e-08!23;CL:0000197!1.84e-07!6;CL:0000098!1.84e-07!6;CL:0002167!1.84e-07!6;CL:0002586!6.37e-07!3|ontology_enrichment_celltype_v019=CL:0000511;2.73e-29;1!CL:0002625;2.73e-29;1!CL:0000216;2.73e-29;1!CL:0002595;6.21e-07;5!CL:0002537;6.21e-07;5!CL:0000077;6.77e-07;19|ontology_enrichment_celltype_v019_2=CL:0000511,1.78e-29,1;CL:0002625,1.78e-29,1;CL:0000216,1.78e-29,1;CL:0002595,6.04e-07,5;CL:0000077,6.57e-07,19;CL:0002537,6.77e-07,5|ontology_enrichment_development_v019=UBERON:0003124;7.48e-30;1|ontology_enrichment_disease=DOID:17!1.91e-08!5;DOID:450!1.91e-08!5;DOID:66!1.91e-08!5;DOID:423!1.91e-08!5;DOID:0080000!1.91e-08!5;DOID:11722!1.91e-08!5|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001781!6.37e-07!3;UBERON:0001782!6.37e-07!3;UBERON:0005424!6.37e-07!3|ontology_enrichment_uberon_v019=UBERON:0001136;2.73e-29;1!UBERON:0001343;2.73e-29;1!UBERON:0004910;2.73e-29;1!UBERON:0004813;2.73e-29;1!UBERON:0004909;2.21e-15;2!UBERON:0001987;1.70e-08;4!UBERON:0005904;2.35e-08;4!UBERON:0003834;6.21e-07;5!UBERON:0001533;6.21e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001136,1.78e-29,1;UBERON:0001343,1.78e-29,1;UBERON:0004910,1.78e-29,1;UBERON:0005154,1.78e-29,1;UBERON:0005295,1.78e-29,1;UBERON:0004813,1.78e-29,1;UBERON:0005297,1.78e-29,1;UBERON:0005294,1.78e-29,1;UBERON:0010141,1.78e-29,1;UBERON:0005891,1.78e-29,1;UBERON:0004909,1.78e-15,2;UBERON:0004871,4.69e-15,8;UBERON:0005631,4.38e-09,14;UBERON:0000158,4.38e-09,14;UBERON:0001987,1.70e-08,4;UBERON:0004340,1.70e-08,4;UBERON:0005904,2.11e-08,4;UBERON:0003834,6.04e-07,5;UBERON:0001533,6.04e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0.300091096084402,0.206105058476878,0,0,0.337552664482532,0.194874010322397,0.504867548488229,0.368199594569197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.797814349754612,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0.713715955188647,0,0.468565659970853,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0.114814448164607,0.182091168006717,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,5.25509159403384,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0.192190067365106,0.127612712494584,0,0,0.94443704049192,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,1.31535265576129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.02520324971387,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0.231522474323834,0.244736704506468,0.895444205407437,0,0,0,0.38582807654183,0,0,0,1.21543982470953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.04764175658916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p5@PSG4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=5672 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9521 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-175bp_to_ENST00000495316_5end | |||
|coexpression_cluster_id=C34 | |||
|description=CAGE_peak_5_at_PSG4_5end | |||
|id=chr19:43708378..43708400,- | |||
|ontology_enrichment_celltype=CL:0000077!7.60e-11!19;CL:0002620!1.50e-08!23;CL:0000197!1.84e-07!6;CL:0000098!1.84e-07!6;CL:0002167!1.84e-07!6;CL:0002586!6.37e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000511;2.73e-29;1!CL:0002625;2.73e-29;1!CL:0000216;2.73e-29;1!CL:0002595;6.21e-07;5!CL:0002537;6.21e-07;5!CL:0000077;6.77e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,1.78e-29,1;CL:0002625,1.78e-29,1;CL:0000216,1.78e-29,1;CL:0002595,6.04e-07,5;CL:0000077,6.57e-07,19;CL:0002537,6.77e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0003124;7.48e-30;1 | |||
|ontology_enrichment_disease=DOID:17!1.91e-08!5;DOID:450!1.91e-08!5;DOID:66!1.91e-08!5;DOID:423!1.91e-08!5;DOID:0080000!1.91e-08!5;DOID:11722!1.91e-08!5 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001781!6.37e-07!3;UBERON:0001782!6.37e-07!3;UBERON:0005424!6.37e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;2.73e-29;1!UBERON:0001343;2.73e-29;1!UBERON:0004910;2.73e-29;1!UBERON:0004813;2.73e-29;1!UBERON:0004909;2.21e-15;2!UBERON:0001987;1.70e-08;4!UBERON:0005904;2.35e-08;4!UBERON:0003834;6.21e-07;5!UBERON:0001533;6.21e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,1.78e-29,1;UBERON:0001343,1.78e-29,1;UBERON:0004910,1.78e-29,1;UBERON:0005154,1.78e-29,1;UBERON:0005295,1.78e-29,1;UBERON:0004813,1.78e-29,1;UBERON:0005297,1.78e-29,1;UBERON:0005294,1.78e-29,1;UBERON:0010141,1.78e-29,1;UBERON:0005891,1.78e-29,1;UBERON:0004909,1.78e-15,2;UBERON:0004871,4.69e-15,8;UBERON:0005631,4.38e-09,14;UBERON:0000158,4.38e-09,14;UBERON:0001987,1.70e-08,4;UBERON:0004340,1.70e-08,4;UBERON:0005904,2.11e-08,4;UBERON:0003834,6.04e-07,5;UBERON:0001533,6.04e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0.300091096084402,0.206105058476878,0,0,0.337552664482532,0.194874010322397,0.504867548488229,0.368199594569197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.797814349754612,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0.713715955188647,0,0.468565659970853,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0.114814448164607,0.182091168006717,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,5.25509159403384,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0.192190067365106,0.127612712494584,0,0,0.94443704049192,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,1.31535265576129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.02520324971387,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0.231522474323834,0.244736704506468,0.895444205407437,0,0,0,0.38582807654183,0,0,0,1.21543982470953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.04764175658916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@PSG4 | |||
}} |
Revision as of 20:59, 11 September 2013
Short description: | p5@PSG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_PSG4_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | -175bp_to_ENST00000495316_5end |
EntrezGene: | PSG4 |
HGNC: | 9521 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 1.78e-29 | 1 |
seminiferous tubule epithelial cell | 1.78e-29 | 1 |
Sertoli cell | 1.78e-29 | 1 |
smooth muscle cell of the subclavian artery | 6.04e-07 | 5 |
mesothelial cell | 6.57e-07 | 19 |
amnion mesenchymal stem cell | 6.77e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 1.78e-29 | 1 |
seminiferous tubule of testis | 1.78e-29 | 1 |
epithelium of male gonad | 1.78e-29 | 1 |
epithelial cord | 1.78e-29 | 1 |
sex cord | 1.78e-29 | 1 |
seminiferous tubule epithelium | 1.78e-29 | 1 |
testis sex cord | 1.78e-29 | 1 |
genital ridge | 1.78e-29 | 1 |
primitive sex cord of indifferent gonad | 1.78e-29 | 1 |
coelomic epithelium | 1.78e-29 | 1 |
epithelium of gonad | 1.78e-15 | 2 |
somatic layer of lateral plate mesoderm | 4.69e-15 | 8 |
extraembryonic membrane | 4.38e-09 | 14 |
membranous layer | 4.38e-09 | 14 |
placenta | 1.70e-08 | 4 |
allantois | 1.70e-08 | 4 |
duct of male reproductive system | 2.11e-08 | 4 |
thoracic segment blood vessel | 6.04e-07 | 5 |
subclavian artery | 6.04e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.