FFCP PHASE1:Hg19::chr19:42388364..42388383,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9138|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=681|TSSclassifier=S|UniProt=Q92888|association_with_transcript=-62bp_to_ENST00000337665,NM_199002,uc002osa.2,uc002osb.2_5end|coexpression_cluster_id=C23|description=CAGE_peak_12_at_ARHGEF1_5end|id=chr19:42388364..42388383,+|ontology_enrichment_celltype=CL:0000791!2.11e-12!18;CL:0000789!2.11e-12!18;CL:0002420!2.11e-12!18;CL:0002419!2.11e-12!18;CL:0000790!2.11e-12!18;CL:0000838!3.79e-11!52;CL:0000542!1.46e-10!53;CL:0000051!1.46e-10!53;CL:0000084!5.23e-10!25;CL:0000827!5.23e-10!25;CL:0000625!1.52e-08!11|ontology_enrichment_celltype_v019=CL:0000791;9.07e-32;18!CL:0000789;9.07e-32;18!CL:0002419;9.07e-32;18!CL:0000084;1.57e-21;25!CL:0000625;3.18e-20;11!CL:0000624;1.70e-15;6!CL:0000898;1.04e-08;3!CL:0000542;1.98e-08;53!CL:0000623;3.15e-08;3!CL:0000767;4.62e-07;3|ontology_enrichment_celltype_v019_2=CL:0000791,5.76e-32,18;CL:0000789,5.76e-32,18;CL:0002420,5.76e-32,18;CL:0002419,5.76e-32,18;CL:0000790,5.76e-32,18;CL:0000084,1.14e-21,25;CL:0000827,1.14e-21,25;CL:0000625,1.86e-20,11;CL:0000838,1.48e-16,52;CL:0000542,4.02e-16,53;CL:0000051,4.02e-16,53;CL:0000624,1.86e-15,6;CL:0000898,1.05e-08,3;CL:0000623,2.89e-08,3;CL:0000825,2.89e-08,3;CL:0000738,5.50e-08,136;CL:0002087,1.37e-07,115;CL:0000767,3.25e-07,3;CL:0000037,8.92e-07,168|ontology_enrichment_development_v019=CL:0000790;9.07e-32;18!CL:0000051;1.98e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000178;6.57e-13;15!UBERON:0000179;6.57e-13;15!UBERON:0000463;6.57e-13;15!UBERON:0002390;1.24e-09;32|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.05e-13,15;UBERON:0000179,6.05e-13,15;UBERON:0000463,6.05e-13,15|phase1_expression=0,0.214100523890983,0.422863212287913,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0,0,0.37129905888014,0.331397375727916,0,0,0,0.487932798790507,0.123121058076788,0.408001382488506,0,0,0.136874425072884,0.251085279189606,0.382067028739756,0.246301768349837,0.236132343941038,2.75354993794233,1.91914699048606,1.08371286321253,0.919421224478927,0.30120591877825,0,0.697204805222715,0.426507697462265,1.46800219667424,0.553995408531877,1.40381113229099,1.08505435357926,0,0.32389366601898,0,0,0,0,0,0.411167888021826,0.619412741790207,0,0,0,0.344745680736619,0.645484683583826,0,0.188242339542605,0.272906150057846,0.449446968890169,0,0,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0,0.419317291016752,0,0,0,0,0.19891667719909,0.182664153764634,0,0.546138611262131,0,0.426730222566507,0.800791974072025,0.574752439954483,0.661044872784862,0,1.1384259382189,0,0.382273228125229,2.64342657158052,0.560508562981536,0.263384084775077,8.06510057466716,4.71612915298998,4.31763147898969,2.00623794468814,6.19252306603822,6.15482147455153,11.6896037044747,2.56244050835899,7.07054177939609,3.76607620792156,4.06205795647523,1.79327847615945,1.43065282315866,2.30213066445147,2.21080014228679,2.31842468588042,5.93146252648242,4.81573490561484,5.22677619024884,2.26618685395132,6.13152789763074,4.46715679127419,1.01207876807801,2.22995790026868,5.20866763085135,1.90090408889675,2.40920190524436,2.30375900077953,3.74792179657038,2.36777252044017,0.821127996921047,4.43534835094411,5.08136371988664,4.92402973201517,0,0,0,0,0,0.289693037921647,0.795285947051099,0.973269740605272,0,0.221729397462564,0.087834785693126,0.327447688744282,0.364295288292542,0.370784442784429,0,0.348259474598534,0.132957960518865,0.715471872916026,1.14398982156026,0,0,0,0.347140501607594,1.13061588384802,0,0.275118041940067,0.835979866147242,0.516833518338658,0,0.33472061276467,0,0.760272105718513,0.24406205754817,0,0,0,0.44905874525234,0.112611480483322,0,0,0.183201743930407,0,0,0.436094052142534,0.993943903390637,0.25326102332916,1.19168262731897,0,0.354668382198357,0,3.20246987189115,0.49333509683432,0,0.269421344139376,0.163461903113459,0.302714855289863,0.576175924479999,0.234321431833797,0.936480230490962,0.570471821544449,0.448346041655403,0,0,0.140450806702248,0.204154171254893,0.368502951935304,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.340296549480063,0,0.427114777637135,0.635795703478686,0.600182192168805,0,1.03056216018252,0,0.675105328965065,0,0,0.0920498986422993,0.161646056818812,0.355009592516614,0.10075209822764,0.169560592310488,0.57978255948989,0.272746120590835,0.286804595389004,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0,0,1.28648187638577,0,0,0,0.118306800039844,0.337169380156203,0,0.110293972732394,0,0,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0.882926198829301,0.368965315629341,0.686271241194102,0,0,0.100528972411631,0.185176890317059,0,0,0,0.115930404975077,0.352226082707465,0.144366447761074,0,0.190254152234598,0,0,0,0.234004265139238,0.148631162288728,0,0.335964256397719,0.141775097242386,0,0,0,0.985326475791887,0,0.414656231081544,0.288239906833923,0.12624243342638,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9138 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=681 | |||
|TSSclassifier=S | |||
|UniProt=Q92888 | |||
|association_with_transcript=-62bp_to_ENST00000337665,NM_199002,uc002osa.2,uc002osb.2_5end | |||
|coexpression_cluster_id=C23 | |||
|description=CAGE_peak_12_at_ARHGEF1_5end | |||
|id=chr19:42388364..42388383,+ | |||
|ontology_enrichment_celltype=CL:0000791!2.11e-12!18;CL:0000789!2.11e-12!18;CL:0002420!2.11e-12!18;CL:0002419!2.11e-12!18;CL:0000790!2.11e-12!18;CL:0000838!3.79e-11!52;CL:0000542!1.46e-10!53;CL:0000051!1.46e-10!53;CL:0000084!5.23e-10!25;CL:0000827!5.23e-10!25;CL:0000625!1.52e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;9.07e-32;18!CL:0000789;9.07e-32;18!CL:0002419;9.07e-32;18!CL:0000084;1.57e-21;25!CL:0000625;3.18e-20;11!CL:0000624;1.70e-15;6!CL:0000898;1.04e-08;3!CL:0000542;1.98e-08;53!CL:0000623;3.15e-08;3!CL:0000767;4.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.76e-32,18;CL:0000789,5.76e-32,18;CL:0002420,5.76e-32,18;CL:0002419,5.76e-32,18;CL:0000790,5.76e-32,18;CL:0000084,1.14e-21,25;CL:0000827,1.14e-21,25;CL:0000625,1.86e-20,11;CL:0000838,1.48e-16,52;CL:0000542,4.02e-16,53;CL:0000051,4.02e-16,53;CL:0000624,1.86e-15,6;CL:0000898,1.05e-08,3;CL:0000623,2.89e-08,3;CL:0000825,2.89e-08,3;CL:0000738,5.50e-08,136;CL:0002087,1.37e-07,115;CL:0000767,3.25e-07,3;CL:0000037,8.92e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;9.07e-32;18!CL:0000051;1.98e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.57e-13;15!UBERON:0000179;6.57e-13;15!UBERON:0000463;6.57e-13;15!UBERON:0002390;1.24e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.05e-13,15;UBERON:0000179,6.05e-13,15;UBERON:0000463,6.05e-13,15 | |||
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| |||
|short_description=p12@ARHGEF1 | |||
}} |
Revision as of 20:52, 11 September 2013
Short description: | p12@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_ARHGEF1_5end |
Coexpression cluster: | C23_CD4_CD8_Natural_Peripheral_Basophils_CD19_CD14 |
Association with transcript: | -62bp_to_ENST00000337665, NM_199002, uc002osa.2, uc002osb.2_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | Q92888 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.76e-32 | 18 |
alpha-beta T cell | 5.76e-32 | 18 |
immature T cell | 5.76e-32 | 18 |
mature T cell | 5.76e-32 | 18 |
immature alpha-beta T cell | 5.76e-32 | 18 |
T cell | 1.14e-21 | 25 |
pro-T cell | 1.14e-21 | 25 |
CD8-positive, alpha-beta T cell | 1.86e-20 | 11 |
lymphoid lineage restricted progenitor cell | 1.48e-16 | 52 |
lymphocyte | 4.02e-16 | 53 |
common lymphoid progenitor | 4.02e-16 | 53 |
CD4-positive, alpha-beta T cell | 1.86e-15 | 6 |
naive T cell | 1.05e-08 | 3 |
natural killer cell | 2.89e-08 | 3 |
pro-NK cell | 2.89e-08 | 3 |
leukocyte | 5.50e-08 | 136 |
nongranular leukocyte | 1.37e-07 | 115 |
basophil | 3.25e-07 | 3 |
hematopoietic stem cell | 8.92e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
blood | 6.05e-13 | 15 |
haemolymphatic fluid | 6.05e-13 | 15 |
organism substance | 6.05e-13 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.