FFCP PHASE1:Hg19::chr19:3870787..3870791,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C467|description=CAGE_peak_at_chr19:3870787..3870791,+|id=chr19:3870787..3870791,+|ontology_enrichment_celltype=CL:0002009!1.64e-22!65;CL:0002194!6.12e-22!63;CL:0000576!6.12e-22!63;CL:0000040!6.12e-22!63;CL:0000559!6.12e-22!63;CL:0000557!1.82e-21!71;CL:0000839!2.08e-21!70;CL:0000766!1.44e-18!76;CL:0000763!3.80e-17!112;CL:0000049!3.80e-17!112;CL:0002057!1.02e-15!42;CL:0000860!1.35e-14!45;CL:0000048!2.71e-11!430;CL:0000723!1.13e-10!436;CL:0000034!2.37e-10!444;CL:0000548!4.47e-10!679;CL:0000004!4.47e-10!679;CL:0000255!4.47e-10!679;CL:0000012!5.86e-10!682;CL:0000134!9.24e-10!358;CL:0002320!1.22e-09!365;CL:0002371!3.06e-09!591;CL:0000219!4.73e-09!390;CL:0000144!1.20e-08!625;CL:0000003!3.71e-08!722;CL:0000063!4.81e-08!578;CL:0002031!5.97e-07!124;CL:0002032!6.81e-07!165;CL:0000837!6.81e-07!165|ontology_enrichment_celltype_v019=CL:0000473;3.32e-34;39!CL:0000234;3.32e-34;39!CL:0000860;1.67e-28;33!CL:0002057;1.67e-28;33!CL:0000576;7.37e-21;48!CL:0000235;3.08e-17;6!CL:0000766;9.95e-17;69!CL:0002619;6.20e-10;3!CL:0000763;1.30e-07;100|ontology_enrichment_celltype_v019_2=CL:0002194,7.06e-47,59;CL:0000576,7.06e-47,59;CL:0000040,7.06e-47,59;CL:0000559,7.06e-47,59;CL:0002009,4.90e-45,61;CL:0000839,6.46e-41,66;CL:0000557,3.64e-40,67;CL:0000473,6.03e-40,48;CL:0000234,6.03e-40,48;CL:0000766,4.99e-39,72;CL:0000860,1.67e-27,42;CL:0002057,1.67e-27,42;CL:0000763,2.56e-24,108;CL:0000049,2.56e-24,108;CL:0002087,7.81e-21,115;CL:0002031,1.44e-19,120;CL:0000235,2.73e-17,6;CL:0000738,2.76e-17,136;CL:0002032,4.32e-14,161;CL:0000837,4.32e-14,161;CL:0000037,4.20e-13,168;CL:0000988,5.94e-12,177;CL:0000134,1.37e-10,354;CL:0002320,3.99e-10,361;CL:0000048,5.75e-10,427;CL:0002619,6.22e-10,3;CL:0000219,1.16e-09,386;CL:0000723,1.26e-09,433;CL:0000034,3.47e-09,441|ontology_enrichment_development_v019=CL:0002057;2.21e-20;42!CL:0000049;3.23e-09;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.47e-19!80;UBERON:0001474!1.88e-19!86;UBERON:0002405!2.31e-18!115;UBERON:0002390!1.73e-16!102;UBERON:0003061!1.73e-16!102;UBERON:0004765!3.19e-16!101;UBERON:0001434!3.19e-16!101;UBERON:0002193!3.32e-16!112;UBERON:0002204!1.11e-13!167;UBERON:0000926!1.86e-09!448;UBERON:0004120!1.86e-09!448;UBERON:0006603!1.86e-09!448;UBERON:0002384!4.33e-08!375;UBERON:0003081!2.04e-07!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.68e-36,76;UBERON:0001474,4.06e-33,82;UBERON:0002405,6.89e-30,93;UBERON:0004765,2.62e-29,90;UBERON:0002390,5.80e-28,98;UBERON:0003061,5.80e-28,98;UBERON:0002193,4.70e-26,108;UBERON:0001434,2.09e-25,100;UBERON:0002204,1.89e-17,167;UBERON:0003081,3.06e-15,203;UBERON:0000926,1.01e-10,315;UBERON:0004120,1.01e-10,315;UBERON:0006603,1.01e-10,315;UBERON:0002384,1.71e-09,371|phase1_expression=1.63510541343501,0.428201047781966,0.845726424575827,0,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0.245733936501509,0,0.218441372130172,0.263766978228454,0.247532705920093,0,0.672325146451775,0.602694528023977,0,1.46379839637152,0,0,0.313454721478088,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,1.23852898652861,0.919421224478927,0,0,0.0774672005803016,0,0,0.553995408531877,0.601633342410425,0,5.15005590751826,5.83008598834163,6.69696475848885,0.726991193897824,1.88937971844405,0.485168122375632,1.85943229524548,2.46700732813095,2.78735733805593,1.7261543539329,1.0246428261164,1.18241114944293,1.03423704220986,3.87290810150296,2.70852973188684,0.564727018627814,2.72906150057846,2.02251136000576,1.53041946185451,1.28371610830437,0,0.989553900560148,0.598390972864896,0.426224750532694,0.870627715885752,0,2.4912889959823,1.25624332628372,3.12889751052121,1.08594422352558,1.21079900526674,0.368277635987565,1.26584954976354,0.422510572623884,3.4016687994407,0.209658645508376,1.01095768031846,0.300353785683013,0,0,2.18808344918999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0.294605907474837,0.443067789167242,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0.50133791063589,0.144846518960824,0,0.973269740605272,0.0945348171640679,0.221729397462564,0,0,0,0.370784442784429,2.59637914923747,2.61194605948901,1.06366368415092,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0,0,0,0,0.81014194788176,0.267899184852239,0,0.112611480483322,0,0,0,0,0,0,0,0,0.397227542439656,0,1.06400514659507,0,0,0.24666754841716,0.622422070799533,0.134710672069688,0,0.151357427644931,0,0.234321431833797,0,0.570471821544449,0.298897361103602,0,0,0.140450806702248,0,0,0.103325781175765,0,0.989067717114227,0,1.43723628363248,0,0.250237039743928,0.277064115484183,0,0.30648779579902,0,0,0,1.06778694409284,0.423863802319124,0,0,0,1.30281799432113,0,0.0974370051611986,0,0.368199594569197,0.48493817045643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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C467 | |||
|description=CAGE_peak_at_chr19:3870787..3870791,+ | |||
|id=chr19:3870787..3870791,+ | |||
|ontology_enrichment_celltype=CL:0002009!1.64e-22!65;CL:0002194!6.12e-22!63;CL:0000576!6.12e-22!63;CL:0000040!6.12e-22!63;CL:0000559!6.12e-22!63;CL:0000557!1.82e-21!71;CL:0000839!2.08e-21!70;CL:0000766!1.44e-18!76;CL:0000763!3.80e-17!112;CL:0000049!3.80e-17!112;CL:0002057!1.02e-15!42;CL:0000860!1.35e-14!45;CL:0000048!2.71e-11!430;CL:0000723!1.13e-10!436;CL:0000034!2.37e-10!444;CL:0000548!4.47e-10!679;CL:0000004!4.47e-10!679;CL:0000255!4.47e-10!679;CL:0000012!5.86e-10!682;CL:0000134!9.24e-10!358;CL:0002320!1.22e-09!365;CL:0002371!3.06e-09!591;CL:0000219!4.73e-09!390;CL:0000144!1.20e-08!625;CL:0000003!3.71e-08!722;CL:0000063!4.81e-08!578;CL:0002031!5.97e-07!124;CL:0002032!6.81e-07!165;CL:0000837!6.81e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.32e-34;39!CL:0000234;3.32e-34;39!CL:0000860;1.67e-28;33!CL:0002057;1.67e-28;33!CL:0000576;7.37e-21;48!CL:0000235;3.08e-17;6!CL:0000766;9.95e-17;69!CL:0002619;6.20e-10;3!CL:0000763;1.30e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,7.06e-47,59;CL:0000576,7.06e-47,59;CL:0000040,7.06e-47,59;CL:0000559,7.06e-47,59;CL:0002009,4.90e-45,61;CL:0000839,6.46e-41,66;CL:0000557,3.64e-40,67;CL:0000473,6.03e-40,48;CL:0000234,6.03e-40,48;CL:0000766,4.99e-39,72;CL:0000860,1.67e-27,42;CL:0002057,1.67e-27,42;CL:0000763,2.56e-24,108;CL:0000049,2.56e-24,108;CL:0002087,7.81e-21,115;CL:0002031,1.44e-19,120;CL:0000235,2.73e-17,6;CL:0000738,2.76e-17,136;CL:0002032,4.32e-14,161;CL:0000837,4.32e-14,161;CL:0000037,4.20e-13,168;CL:0000988,5.94e-12,177;CL:0000134,1.37e-10,354;CL:0002320,3.99e-10,361;CL:0000048,5.75e-10,427;CL:0002619,6.22e-10,3;CL:0000219,1.16e-09,386;CL:0000723,1.26e-09,433;CL:0000034,3.47e-09,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.21e-20;42!CL:0000049;3.23e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.47e-19!80;UBERON:0001474!1.88e-19!86;UBERON:0002405!2.31e-18!115;UBERON:0002390!1.73e-16!102;UBERON:0003061!1.73e-16!102;UBERON:0004765!3.19e-16!101;UBERON:0001434!3.19e-16!101;UBERON:0002193!3.32e-16!112;UBERON:0002204!1.11e-13!167;UBERON:0000926!1.86e-09!448;UBERON:0004120!1.86e-09!448;UBERON:0006603!1.86e-09!448;UBERON:0002384!4.33e-08!375;UBERON:0003081!2.04e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.68e-36,76;UBERON:0001474,4.06e-33,82;UBERON:0002405,6.89e-30,93;UBERON:0004765,2.62e-29,90;UBERON:0002390,5.80e-28,98;UBERON:0003061,5.80e-28,98;UBERON:0002193,4.70e-26,108;UBERON:0001434,2.09e-25,100;UBERON:0002204,1.89e-17,167;UBERON:0003081,3.06e-15,203;UBERON:0000926,1.01e-10,315;UBERON:0004120,1.01e-10,315;UBERON:0006603,1.01e-10,315;UBERON:0002384,1.71e-09,371 | |||
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| |||
|short_description=p@chr19:3870787..3870791,+ | |||
}} |
Revision as of 20:25, 11 September 2013
Short description: | p@chr19:3870787..3870791, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:3870787..3870791, + |
Coexpression cluster: | C467_CD14_Monocytederived_Mesenchymal_Macrophage_Dendritic_mucinous_liver |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 7.06e-47 | 59 |
monocyte | 7.06e-47 | 59 |
monoblast | 7.06e-47 | 59 |
promonocyte | 7.06e-47 | 59 |
macrophage dendritic cell progenitor | 4.90e-45 | 61 |
myeloid lineage restricted progenitor cell | 6.46e-41 | 66 |
granulocyte monocyte progenitor cell | 3.64e-40 | 67 |
defensive cell | 6.03e-40 | 48 |
phagocyte | 6.03e-40 | 48 |
myeloid leukocyte | 4.99e-39 | 72 |
classical monocyte | 1.67e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.67e-27 | 42 |
myeloid cell | 2.56e-24 | 108 |
common myeloid progenitor | 2.56e-24 | 108 |
nongranular leukocyte | 7.81e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 1.44e-19 | 120 |
macrophage | 2.73e-17 | 6 |
leukocyte | 2.76e-17 | 136 |
hematopoietic oligopotent progenitor cell | 4.32e-14 | 161 |
hematopoietic multipotent progenitor cell | 4.32e-14 | 161 |
hematopoietic stem cell | 4.20e-13 | 168 |
hematopoietic cell | 5.94e-12 | 177 |
mesenchymal cell | 1.37e-10 | 354 |
connective tissue cell | 3.99e-10 | 361 |
multi fate stem cell | 5.75e-10 | 427 |
adult endothelial progenitor cell | 6.22e-10 | 3 |
motile cell | 1.16e-09 | 386 |
somatic stem cell | 1.26e-09 | 433 |
stem cell | 3.47e-09 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.68e-36 | 76 |
bone element | 4.06e-33 | 82 |
immune system | 6.89e-30 | 93 |
skeletal element | 2.62e-29 | 90 |
hematopoietic system | 5.80e-28 | 98 |
blood island | 5.80e-28 | 98 |
hemolymphoid system | 4.70e-26 | 108 |
skeletal system | 2.09e-25 | 100 |
musculoskeletal system | 1.89e-17 | 167 |
lateral plate mesoderm | 3.06e-15 | 203 |
mesoderm | 1.01e-10 | 315 |
mesoderm-derived structure | 1.01e-10 | 315 |
presumptive mesoderm | 1.01e-10 | 315 |
connective tissue | 1.71e-09 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.