FFCP PHASE1:Hg19::chr19:11546153..11546168,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5589|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9411|TSSclassifier=S|UniProt=P14314,A8K318|association_with_transcript=-100bp_to_ENST00000252455,ENST00000412601,NM_001001329,NM_002743,uc002mrt.2,uc002mru.2,uc010dya.2,uc010xlz.1_5end|coexpression_cluster_id=C1|description=CAGE_peak_16_at_PRKCSH_5end|id=chr19:11546153..11546168,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002593;2.21e-15;2!CL:0002600;2.21e-15;2!CL:0002592;1.04e-10;3!CL:0000307;1.04e-10;3!CL:0002595;6.21e-07;5|ontology_enrichment_celltype_v019_2=CL:0002600,2.05e-15,2;CL:0002593,2.74e-15,2;CL:0002592,8.99e-11,3;CL:0000068,1.09e-10,3;CL:0000069,1.09e-10,3;CL:0000307,1.09e-10,3;CL:0000377,1.09e-10,3;CL:0002595,6.77e-07,5|ontology_enrichment_development_v019=UBERON:0009117;1.89e-12;10!UBERON:0005564;1.89e-12;10!CL:0000377;1.04e-10;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0003126;4.73e-17;7!UBERON:0001005;4.73e-17;7!UBERON:0002456;2.21e-15;2!UBERON:0000473;2.65e-15;8!UBERON:0003135;2.07e-11;11!UBERON:0003498;1.04e-10;3!UBERON:0005985;1.04e-10;3!UBERON:0001621;1.04e-10;3!UBERON:0007196;1.71e-08;15!UBERON:0001558;1.71e-08;15!UBERON:0003834;6.21e-07;5!UBERON:0001533;6.21e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0003126,4.73e-17,7;UBERON:0001005,4.73e-17,7;UBERON:0000473,2.65e-15,8;UBERON:0002456,2.74e-15,2;UBERON:0003135,2.07e-11,11;UBERON:0001621,8.99e-11,3;UBERON:0007196,1.71e-08,15;UBERON:0001558,1.71e-08,15;UBERON:0003498,5.70e-07,5;UBERON:0005985,5.70e-07,5;UBERON:0003834,6.77e-07,5;UBERON:0001533,6.77e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0.232401601740905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,2.42311289670768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0.24406205754817,0,0,0,0,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0.169560592310488,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0.532844358032199,0.142977993658148,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0.179060963239896,0.112085143993527,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0.232420756919918,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0.096670718292122,0.308097234229289,0,0.137836572484531,0,0,0.255679882248303,0,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,1.58510321173008,0,0,0,1.05650146756755,0,0.141405431953713,0,0,0,0.438450885253763,1.15755106853338,0,0,0,0,0,0,0,0.354761064070598,0,0.329294892959902,0,0,0.0962221127255121,0,1.08890984861323,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728341138602278,0,0,0,0,0.60129367765797,0.311064574191741,0,0.330991955875499,0,0,0,0.416024019039416,0,0,0,0,0.171986032471617,0.0967563312890851,0.146178634172371,0.164230914106418,0,0.0882561266915003,0,0.137041924646751,0.19871461170299,0.0633107959558787,0,0.0801588202515337,0,0,0,0.229073192331831,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0.272406812223151,0,0.137539436597234,0.415440338029185,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0.295710299979268,0,0,0,0,0.265841714557995,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0.368211900503681,0.139879507719444,0,0,0.107824811396682,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0,0,0.196295437002051,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0.131545547125698,0,0.111231401892069,0.078493092850514,0.157115589916002,0,0,0,0,0.0714765441766563,0,0.116241425368125,0,0,0,0,0,0,0.354996002191696,0.255640214277473,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0.356760272332706,0,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.84983668596732,7.23503151421682,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p16@PRKCSH}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=5589 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9411 | |||
|TSSclassifier=S | |||
|UniProt=P14314,A8K318 | |||
|association_with_transcript=-100bp_to_ENST00000252455,ENST00000412601,NM_001001329,NM_002743,uc002mrt.2,uc002mru.2,uc010dya.2,uc010xlz.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_16_at_PRKCSH_5end | |||
|id=chr19:11546153..11546168,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002593;2.21e-15;2!CL:0002600;2.21e-15;2!CL:0002592;1.04e-10;3!CL:0000307;1.04e-10;3!CL:0002595;6.21e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002600,2.05e-15,2;CL:0002593,2.74e-15,2;CL:0002592,8.99e-11,3;CL:0000068,1.09e-10,3;CL:0000069,1.09e-10,3;CL:0000307,1.09e-10,3;CL:0000377,1.09e-10,3;CL:0002595,6.77e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.89e-12;10!UBERON:0005564;1.89e-12;10!CL:0000377;1.04e-10;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0003126;4.73e-17;7!UBERON:0001005;4.73e-17;7!UBERON:0002456;2.21e-15;2!UBERON:0000473;2.65e-15;8!UBERON:0003135;2.07e-11;11!UBERON:0003498;1.04e-10;3!UBERON:0005985;1.04e-10;3!UBERON:0001621;1.04e-10;3!UBERON:0007196;1.71e-08;15!UBERON:0001558;1.71e-08;15!UBERON:0003834;6.21e-07;5!UBERON:0001533;6.21e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003126,4.73e-17,7;UBERON:0001005,4.73e-17,7;UBERON:0000473,2.65e-15,8;UBERON:0002456,2.74e-15,2;UBERON:0003135,2.07e-11,11;UBERON:0001621,8.99e-11,3;UBERON:0007196,1.71e-08,15;UBERON:0001558,1.71e-08,15;UBERON:0003498,5.70e-07,5;UBERON:0005985,5.70e-07,5;UBERON:0003834,6.77e-07,5;UBERON:0001533,6.77e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0.232401601740905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,2.42311289670768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0.24406205754817,0,0,0,0,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0.169560592310488,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0.532844358032199,0.142977993658148,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0.179060963239896,0.112085143993527,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0.232420756919918,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0.096670718292122,0.308097234229289,0,0.137836572484531,0,0,0.255679882248303,0,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,1.58510321173008,0,0,0,1.05650146756755,0,0.141405431953713,0,0,0,0.438450885253763,1.15755106853338,0,0,0,0,0,0,0,0.354761064070598,0,0.329294892959902,0,0,0.0962221127255121,0,1.08890984861323,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728341138602278,0,0,0,0,0.60129367765797,0.311064574191741,0,0.330991955875499,0,0,0,0.416024019039416,0,0,0,0,0.171986032471617,0.0967563312890851,0.146178634172371,0.164230914106418,0,0.0882561266915003,0,0.137041924646751,0.19871461170299,0.0633107959558787,0,0.0801588202515337,0,0,0,0.229073192331831,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0.272406812223151,0,0.137539436597234,0.415440338029185,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0.295710299979268,0,0,0,0,0.265841714557995,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0.368211900503681,0.139879507719444,0,0,0.107824811396682,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0,0,0.196295437002051,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0.131545547125698,0,0.111231401892069,0.078493092850514,0.157115589916002,0,0,0,0,0.0714765441766563,0,0.116241425368125,0,0,0,0,0,0,0.354996002191696,0.255640214277473,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0.356760272332706,0,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.84983668596732,7.23503151421682,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p16@PRKCSH | |||
}} |
Revision as of 18:40, 11 September 2013
Short description: | p16@PRKCSH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_16_at_PRKCSH_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -100bp_to_ENST00000252455, ENST00000412601, NM_001001329, NM_002743, uc002mrt.2, uc002mru.2, uc010dya.2, uc010xlz.1_5end |
EntrezGene: | PRKCSH |
HGNC: | 9411 |
UniProt: | P14314A8K318 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of trachea | 2.05e-15 | 2 |
smooth muscle cell of the internal thoracic artery | 2.74e-15 | 2 |
smooth muscle cell of the coronary artery | 8.99e-11 | 3 |
duct epithelial cell | 1.09e-10 | 3 |
branched duct epithelial cell | 1.09e-10 | 3 |
tracheal epithelial cell | 1.09e-10 | 3 |
tracheoblast | 1.09e-10 | 3 |
smooth muscle cell of the subclavian artery | 6.77e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
trachea | 4.73e-17 | 7 |
respiratory airway | 4.73e-17 | 7 |
testis | 2.65e-15 | 8 |
internal thoracic artery | 2.74e-15 | 2 |
male reproductive organ | 2.07e-11 | 11 |
coronary artery | 8.99e-11 | 3 |
tracheobronchial tree | 1.71e-08 | 15 |
lower respiratory tract | 1.71e-08 | 15 |
heart blood vessel | 5.70e-07 | 5 |
coronary vessel | 5.70e-07 | 5 |
thoracic segment blood vessel | 6.77e-07 | 5 |
subclavian artery | 6.77e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.