FFCP PHASE1:Hg19::chr18:5397105..5397116,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr18:5397105..5397116,-|id=chr18:5397105..5397116,-|ontology_enrichment_celltype=CL:0002057!4.92e-19!42;CL:0000860!4.45e-17!45;CL:0002009!2.06e-14!65;CL:0002194!3.48e-14!63;CL:0000576!3.48e-14!63;CL:0000040!3.48e-14!63;CL:0000559!3.48e-14!63;CL:0000557!2.86e-12!71;CL:0000839!1.05e-11!70;CL:0000766!1.09e-10!76;CL:0000763!7.28e-07!112;CL:0000049!7.28e-07!112|ontology_enrichment_celltype_v019=CL:0000473;5.32e-22;39!CL:0000234;5.32e-22;39!CL:0000860;6.11e-18;33!CL:0002057;6.11e-18;33!CL:0000576;3.12e-10;48!CL:0000766;3.85e-08;69!CL:0000235;4.82e-08;6|ontology_enrichment_celltype_v019_2=CL:0000473,2.14e-20,48;CL:0000234,2.14e-20,48;CL:0002194,4.73e-16,59;CL:0000576,4.73e-16,59;CL:0000040,4.73e-16,59;CL:0000559,4.73e-16,59;CL:0002009,1.72e-15,61;CL:0000860,5.17e-15,42;CL:0002057,5.17e-15,42;CL:0000839,3.11e-14,66;CL:0000557,5.27e-14,67;CL:0000766,5.95e-13,72;CL:0000763,3.24e-08,108;CL:0000049,3.24e-08,108;CL:0000235,5.95e-08,6;CL:0002087,1.23e-07,115;CL:0002031,2.92e-07,120|ontology_enrichment_development_v019=CL:0002057;1.16e-12;42!UBERON:0005425;3.64e-12;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3112;9.10e-12;1|ontology_enrichment_disease_v019_2=DOID:3112,7.76e-12,1|ontology_enrichment_uberon=UBERON:0001049!3.00e-18!57;UBERON:0005068!3.00e-18!57;UBERON:0006241!3.00e-18!57;UBERON:0007135!3.00e-18!57;UBERON:0001017!2.77e-14!82;UBERON:0007023!6.66e-14!115;UBERON:0002616!1.56e-13!59;UBERON:0002780!2.01e-13!41;UBERON:0001890!2.01e-13!41;UBERON:0006240!2.01e-13!41;UBERON:0005743!4.83e-13!86;UBERON:0003080!6.48e-13!42;UBERON:0002346!1.20e-11!90;UBERON:0000955!1.22e-11!69;UBERON:0006238!1.22e-11!69;UBERON:0000073!1.40e-11!94;UBERON:0001016!1.40e-11!94;UBERON:0003075!3.16e-11!86;UBERON:0007284!3.16e-11!86;UBERON:0002020!4.59e-11!34;UBERON:0003528!4.59e-11!34;UBERON:0001893!1.18e-10!34;UBERON:0002791!4.75e-10!33;UBERON:0002371!1.02e-09!80;UBERON:0001869!2.60e-09!32;UBERON:0004765!4.74e-09!101;UBERON:0001434!4.74e-09!101;UBERON:0000062!7.71e-09!511;UBERON:0000468!1.79e-08!659;UBERON:0001474!2.38e-08!86;UBERON:0002619!1.03e-07!22;UBERON:0001950!1.60e-07!20;UBERON:0000467!2.23e-07!625;UBERON:0000480!2.63e-07!626;UBERON:0003056!2.64e-07!61;UBERON:0000956!2.87e-07!25;UBERON:0000203!2.87e-07!25;UBERON:0002298!4.57e-07!8|ontology_enrichment_uberon_v019=UBERON:0000941;3.64e-12;1!UBERON:0001785;3.64e-12;1!UBERON:0002464;3.64e-12;1!UBERON:0004904;3.64e-12;1!UBERON:0001021;3.64e-12;1!UBERON:0002771;9.17e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.27e-12,1;UBERON:0001785,3.27e-12,1;UBERON:0002464,3.27e-12,1;UBERON:0004904,3.27e-12,1;UBERON:0001021,3.27e-12,1;UBERON:0003902,3.27e-12,1;UBERON:0005425,3.27e-12,1;UBERON:0002371,3.30e-12,76;UBERON:0001474,3.16e-11,82;UBERON:0004765,4.07e-10,90;UBERON:0002405,9.47e-10,93;UBERON:0002390,3.46e-09,98;UBERON:0003061,3.46e-09,98;UBERON:0001434,5.61e-09,100;UBERON:0002193,3.24e-08,108;UBERON:0002771,9.44e-07,2;UBERON:0003714,9.96e-07,2;UBERON:0005162,9.96e-07,2;UBERON:0000122,9.96e-07,2|phase1_expression=0,0.214100523890983,0.422863212287913,0,0,0,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0.257575567634187,0.726991193897824,0.377875943688809,0.242584061187816,0.697287110717054,0.411167888021826,0.309706370895104,0.863077176966451,1.2808035326455,0.709446689665756,0.344745680736619,0,0,1.12945403725563,0.818718450173537,0.224723484445085,0.918251677112708,0.320929027076094,0,0,0.797854630486527,1.70489900213078,2.61188314765726,1.13477044938228,0.622822248995575,1.00499466102697,1.0429658368404,0.217188844705117,1.21079900526674,0,0.316462387440884,0,0.212604299965044,0.419317291016752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,1.10047216776027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,1.06748995729705,0.24666754841716,0,0,0,0,0,0,0.312160076830321,0,0.149448680551801,0,0,0.140450806702248,0,0.245668634623536,0.206651562351531,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0.612975591598039,0,0,0.717558542755448,0.213557388818567,0.211931901159562,0.300091096084402,0.103052529238439,0,0,0,0.194874010322397,0.252433774244115,0,0,1.06502877754984,0.302256294682921,0.169560592310488,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0.594524649154913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0,0,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64871341923571,1.00451418286425,0,0,0,0,0,0,0,0,0,0,0,0.762283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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr18:5397105..5397116,- | |||
|id=chr18:5397105..5397116,- | |||
|ontology_enrichment_celltype=CL:0002057!4.92e-19!42;CL:0000860!4.45e-17!45;CL:0002009!2.06e-14!65;CL:0002194!3.48e-14!63;CL:0000576!3.48e-14!63;CL:0000040!3.48e-14!63;CL:0000559!3.48e-14!63;CL:0000557!2.86e-12!71;CL:0000839!1.05e-11!70;CL:0000766!1.09e-10!76;CL:0000763!7.28e-07!112;CL:0000049!7.28e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;5.32e-22;39!CL:0000234;5.32e-22;39!CL:0000860;6.11e-18;33!CL:0002057;6.11e-18;33!CL:0000576;3.12e-10;48!CL:0000766;3.85e-08;69!CL:0000235;4.82e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.14e-20,48;CL:0000234,2.14e-20,48;CL:0002194,4.73e-16,59;CL:0000576,4.73e-16,59;CL:0000040,4.73e-16,59;CL:0000559,4.73e-16,59;CL:0002009,1.72e-15,61;CL:0000860,5.17e-15,42;CL:0002057,5.17e-15,42;CL:0000839,3.11e-14,66;CL:0000557,5.27e-14,67;CL:0000766,5.95e-13,72;CL:0000763,3.24e-08,108;CL:0000049,3.24e-08,108;CL:0000235,5.95e-08,6;CL:0002087,1.23e-07,115;CL:0002031,2.92e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;1.16e-12;42!UBERON:0005425;3.64e-12;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;9.10e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,7.76e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.00e-18!57;UBERON:0005068!3.00e-18!57;UBERON:0006241!3.00e-18!57;UBERON:0007135!3.00e-18!57;UBERON:0001017!2.77e-14!82;UBERON:0007023!6.66e-14!115;UBERON:0002616!1.56e-13!59;UBERON:0002780!2.01e-13!41;UBERON:0001890!2.01e-13!41;UBERON:0006240!2.01e-13!41;UBERON:0005743!4.83e-13!86;UBERON:0003080!6.48e-13!42;UBERON:0002346!1.20e-11!90;UBERON:0000955!1.22e-11!69;UBERON:0006238!1.22e-11!69;UBERON:0000073!1.40e-11!94;UBERON:0001016!1.40e-11!94;UBERON:0003075!3.16e-11!86;UBERON:0007284!3.16e-11!86;UBERON:0002020!4.59e-11!34;UBERON:0003528!4.59e-11!34;UBERON:0001893!1.18e-10!34;UBERON:0002791!4.75e-10!33;UBERON:0002371!1.02e-09!80;UBERON:0001869!2.60e-09!32;UBERON:0004765!4.74e-09!101;UBERON:0001434!4.74e-09!101;UBERON:0000062!7.71e-09!511;UBERON:0000468!1.79e-08!659;UBERON:0001474!2.38e-08!86;UBERON:0002619!1.03e-07!22;UBERON:0001950!1.60e-07!20;UBERON:0000467!2.23e-07!625;UBERON:0000480!2.63e-07!626;UBERON:0003056!2.64e-07!61;UBERON:0000956!2.87e-07!25;UBERON:0000203!2.87e-07!25;UBERON:0002298!4.57e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.64e-12;1!UBERON:0001785;3.64e-12;1!UBERON:0002464;3.64e-12;1!UBERON:0004904;3.64e-12;1!UBERON:0001021;3.64e-12;1!UBERON:0002771;9.17e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.27e-12,1;UBERON:0001785,3.27e-12,1;UBERON:0002464,3.27e-12,1;UBERON:0004904,3.27e-12,1;UBERON:0001021,3.27e-12,1;UBERON:0003902,3.27e-12,1;UBERON:0005425,3.27e-12,1;UBERON:0002371,3.30e-12,76;UBERON:0001474,3.16e-11,82;UBERON:0004765,4.07e-10,90;UBERON:0002405,9.47e-10,93;UBERON:0002390,3.46e-09,98;UBERON:0003061,3.46e-09,98;UBERON:0001434,5.61e-09,100;UBERON:0002193,3.24e-08,108;UBERON:0002771,9.44e-07,2;UBERON:0003714,9.96e-07,2;UBERON:0005162,9.96e-07,2;UBERON:0000122,9.96e-07,2 | |||
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|short_description=p@chr18:5397105..5397116,- | |||
}} |
Revision as of 17:47, 11 September 2013
Short description: | p@chr18:5397105..5397116, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr18:5397105..5397116, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.14e-20 | 48 |
phagocyte | 2.14e-20 | 48 |
monopoietic cell | 4.73e-16 | 59 |
monocyte | 4.73e-16 | 59 |
monoblast | 4.73e-16 | 59 |
promonocyte | 4.73e-16 | 59 |
macrophage dendritic cell progenitor | 1.72e-15 | 61 |
classical monocyte | 5.17e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.17e-15 | 42 |
myeloid lineage restricted progenitor cell | 3.11e-14 | 66 |
granulocyte monocyte progenitor cell | 5.27e-14 | 67 |
myeloid leukocyte | 5.95e-13 | 72 |
myeloid cell | 3.24e-08 | 108 |
common myeloid progenitor | 3.24e-08 | 108 |
macrophage | 5.95e-08 | 6 |
nongranular leukocyte | 1.23e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 2.92e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.27e-12 | 1 |
cranial nerve | 3.27e-12 | 1 |
nerve trunk | 3.27e-12 | 1 |
nerve connecting eye with brain | 3.27e-12 | 1 |
nerve | 3.27e-12 | 1 |
retinal neural layer | 3.27e-12 | 1 |
presumptive neural retina | 3.27e-12 | 1 |
bone marrow | 3.30e-12 | 76 |
bone element | 3.16e-11 | 82 |
skeletal element | 4.07e-10 | 90 |
immune system | 9.47e-10 | 93 |
hematopoietic system | 3.46e-09 | 98 |
blood island | 3.46e-09 | 98 |
skeletal system | 5.61e-09 | 100 |
hemolymphoid system | 3.24e-08 | 108 |
middle temporal gyrus | 9.44e-07 | 2 |
neural tissue | 9.96e-07 | 2 |
multi cell component structure | 9.96e-07 | 2 |
neuron projection bundle | 9.96e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 7.76e-12 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.