FFCP PHASE1:Hg19::chr18:28742652..28742696,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1823|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3035|TSSclassifier=S|UniProt=Q08554,Q9HB00|association_with_transcript=122bp_to_ENST00000257197,ENST00000257198,NM_004948,NM_024421,uc002kwm.2,uc002kwn.2_5end|coexpression_cluster_id=C202|description=CAGE_peak_1_at_DSC1_5end|id=chr18:28742652..28742696,-|ontology_enrichment_celltype=CL:0000791!1.78e-12!18;CL:0000789!1.78e-12!18;CL:0002420!1.78e-12!18;CL:0002419!1.78e-12!18;CL:0000790!1.78e-12!18;CL:0000625!7.73e-12!11;CL:0000084!2.93e-08!25;CL:0000827!2.93e-08!25;CL:0000842!3.69e-07!3|ontology_enrichment_celltype_v019=CL:0001014;1.84e-15;2!CL:0001016;1.84e-15;2!CL:0000312;2.78e-13;5!CL:0000622;2.90e-13;5!CL:0000362;1.44e-12;9!CL:0000240;3.73e-11;6!CL:0000311;3.73e-11;6!CL:0000079;3.73e-11;6!CL:0000237;3.73e-11;6!CL:0000154;3.86e-11;6!CL:0002623;1.28e-10;3!CL:0002159;3.99e-08;14!CL:0000150;1.40e-07;9|ontology_enrichment_celltype_v019_2=CL:0001014,1.77e-15,2;CL:0001016,1.77e-15,2;CL:0000622,3.03e-13,5;CL:0000312,3.16e-13,5;CL:0000362,1.63e-12,9;CL:0000154,4.00e-11,6;CL:0000240,4.14e-11,6;CL:0000311,4.14e-11,6;CL:0000079,4.14e-11,6;CL:0000237,4.14e-11,6;CL:0000036,4.14e-11,6;CL:0000357,4.14e-11,6;CL:0000114,4.14e-11,6;CL:0002623,1.28e-10,3;CL:0002159,4.30e-08,14;CL:0000150,1.43e-07,9|ontology_enrichment_development_v019=CL:0000357;3.73e-11;6!CL:0000114;3.73e-11;6!UBERON:0000358;1.31e-08;1!UBERON:0004874;1.52e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3151;1.69e-08;1!DOID:3149;1.69e-08;1|ontology_enrichment_disease_v019_2=DOID:3151,1.75e-08,1;DOID:3149,1.75e-08,1|ontology_enrichment_uberon=UBERON:0007023!1.20e-17!115;UBERON:0002619!7.94e-15!22;UBERON:0001950!2.30e-14!20;UBERON:0000956!1.07e-12!25;UBERON:0000203!1.07e-12!25;UBERON:0001869!2.83e-12!32;UBERON:0001893!2.44e-11!34;UBERON:0004121!1.74e-10!169;UBERON:0002791!2.91e-10!33;UBERON:0000924!5.22e-10!173;UBERON:0006601!5.22e-10!173;UBERON:0002020!7.30e-10!34;UBERON:0003528!7.30e-10!34;UBERON:0000200!8.05e-09!6;UBERON:0002780!8.71e-09!41;UBERON:0001890!8.71e-09!41;UBERON:0006240!8.71e-09!41;UBERON:0003080!1.71e-08!42;UBERON:0000153!2.06e-08!129;UBERON:0007811!2.06e-08!129;UBERON:0000033!1.01e-07!123;UBERON:0002021!1.58e-07!5;UBERON:0002771!2.92e-07!3|ontology_enrichment_uberon_v019=UBERON:0001003;1.48e-11;15!UBERON:0007376;1.48e-11;15!UBERON:0001723;2.98e-10;3!UBERON:0001033;2.98e-10;3!UBERON:0007029;1.05e-08;1!UBERON:0000989;1.52e-08;1!UBERON:0008811;1.52e-08;1!UBERON:0000014;3.51e-08;4!UBERON:0002135;5.43e-08;1!UBERON:0001950;7.96e-08;20!UBERON:0002619;3.97e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0001003,1.62e-11,15;UBERON:0007376,1.62e-11,15;UBERON:0007383,1.62e-11,15;UBERON:0001723,2.98e-10,3;UBERON:0001033,2.98e-10,3;UBERON:0010056,2.98e-10,3;UBERON:0007029,1.05e-08,1;UBERON:0000989,1.52e-08,1;UBERON:0008811,1.52e-08,1;UBERON:0006258,1.52e-08,1;UBERON:0005876,1.52e-08,1;UBERON:0004874,1.52e-08,1;UBERON:0000014,3.58e-08,4;UBERON:0004121,4.17e-08,171;UBERON:0000924,4.17e-08,171;UBERON:0006601,4.17e-08,171;UBERON:0002135,5.43e-08,1;UBERON:0001950,7.73e-08,20;UBERON:0002619,3.87e-07,22|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786839080455332,0.393010762749165,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55887751588945,2.40786745280742,0,0,0,0,0,0.637130828648193,0.651083453856419,0,0.903450714466637,2.94369205655162,1.24930726552346,1.18388626022008,0,0.604820229674197,0,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.46301940778654,3.37205259772859,2.01057944823262,0.462942225792648,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,1.50999940573032,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0.714695326373367,0.822724546172388,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36408156524854,0,0,0,2.67268212749375,2.76444631889309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0.139423744278603,0.0769502585037971,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1823 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3035 | |||
|TSSclassifier=S | |||
|UniProt=Q08554,Q9HB00 | |||
|association_with_transcript=122bp_to_ENST00000257197,ENST00000257198,NM_004948,NM_024421,uc002kwm.2,uc002kwn.2_5end | |||
|coexpression_cluster_id=C202 | |||
|description=CAGE_peak_1_at_DSC1_5end | |||
|id=chr18:28742652..28742696,- | |||
|ontology_enrichment_celltype=CL:0000791!1.78e-12!18;CL:0000789!1.78e-12!18;CL:0002420!1.78e-12!18;CL:0002419!1.78e-12!18;CL:0000790!1.78e-12!18;CL:0000625!7.73e-12!11;CL:0000084!2.93e-08!25;CL:0000827!2.93e-08!25;CL:0000842!3.69e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0001014;1.84e-15;2!CL:0001016;1.84e-15;2!CL:0000312;2.78e-13;5!CL:0000622;2.90e-13;5!CL:0000362;1.44e-12;9!CL:0000240;3.73e-11;6!CL:0000311;3.73e-11;6!CL:0000079;3.73e-11;6!CL:0000237;3.73e-11;6!CL:0000154;3.86e-11;6!CL:0002623;1.28e-10;3!CL:0002159;3.99e-08;14!CL:0000150;1.40e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,1.77e-15,2;CL:0001016,1.77e-15,2;CL:0000622,3.03e-13,5;CL:0000312,3.16e-13,5;CL:0000362,1.63e-12,9;CL:0000154,4.00e-11,6;CL:0000240,4.14e-11,6;CL:0000311,4.14e-11,6;CL:0000079,4.14e-11,6;CL:0000237,4.14e-11,6;CL:0000036,4.14e-11,6;CL:0000357,4.14e-11,6;CL:0000114,4.14e-11,6;CL:0002623,1.28e-10,3;CL:0002159,4.30e-08,14;CL:0000150,1.43e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;3.73e-11;6!CL:0000114;3.73e-11;6!UBERON:0000358;1.31e-08;1!UBERON:0004874;1.52e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;1.69e-08;1!DOID:3149;1.69e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.75e-08,1;DOID:3149,1.75e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.20e-17!115;UBERON:0002619!7.94e-15!22;UBERON:0001950!2.30e-14!20;UBERON:0000956!1.07e-12!25;UBERON:0000203!1.07e-12!25;UBERON:0001869!2.83e-12!32;UBERON:0001893!2.44e-11!34;UBERON:0004121!1.74e-10!169;UBERON:0002791!2.91e-10!33;UBERON:0000924!5.22e-10!173;UBERON:0006601!5.22e-10!173;UBERON:0002020!7.30e-10!34;UBERON:0003528!7.30e-10!34;UBERON:0000200!8.05e-09!6;UBERON:0002780!8.71e-09!41;UBERON:0001890!8.71e-09!41;UBERON:0006240!8.71e-09!41;UBERON:0003080!1.71e-08!42;UBERON:0000153!2.06e-08!129;UBERON:0007811!2.06e-08!129;UBERON:0000033!1.01e-07!123;UBERON:0002021!1.58e-07!5;UBERON:0002771!2.92e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;1.48e-11;15!UBERON:0007376;1.48e-11;15!UBERON:0001723;2.98e-10;3!UBERON:0001033;2.98e-10;3!UBERON:0007029;1.05e-08;1!UBERON:0000989;1.52e-08;1!UBERON:0008811;1.52e-08;1!UBERON:0000014;3.51e-08;4!UBERON:0002135;5.43e-08;1!UBERON:0001950;7.96e-08;20!UBERON:0002619;3.97e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,1.62e-11,15;UBERON:0007376,1.62e-11,15;UBERON:0007383,1.62e-11,15;UBERON:0001723,2.98e-10,3;UBERON:0001033,2.98e-10,3;UBERON:0010056,2.98e-10,3;UBERON:0007029,1.05e-08,1;UBERON:0000989,1.52e-08,1;UBERON:0008811,1.52e-08,1;UBERON:0006258,1.52e-08,1;UBERON:0005876,1.52e-08,1;UBERON:0004874,1.52e-08,1;UBERON:0000014,3.58e-08,4;UBERON:0004121,4.17e-08,171;UBERON:0000924,4.17e-08,171;UBERON:0006601,4.17e-08,171;UBERON:0002135,5.43e-08,1;UBERON:0001950,7.73e-08,20;UBERON:0002619,3.87e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786839080455332,0.393010762749165,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55887751588945,2.40786745280742,0,0,0,0,0,0.637130828648193,0.651083453856419,0,0.903450714466637,2.94369205655162,1.24930726552346,1.18388626022008,0,0.604820229674197,0,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.46301940778654,3.37205259772859,2.01057944823262,0.462942225792648,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,1.50999940573032,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0.714695326373367,0.822724546172388,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36408156524854,0,0,0,2.67268212749375,2.76444631889309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0.139423744278603,0.0769502585037971,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0.969890164884194,0,0.451961481561065,0,0,0.443175571691151,0,0,0,0,0,23.8236120025105,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39641200636127,0.229160424011684,0,0.199679000498991,0,0.89268582976749,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,5.84932118033901,28.6306723186441,0.242998226632099,5.36695500158826,0,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,1.6274820991845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10606748921385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,1.41696576325585,1.91560630868582,0.615349092722265,0,0.691572524642179,0,0,0.196295437002051,0,0.550285795565037,0,0,0,0,0,0,0,0.261906694481422,0,0,0.270150338473579,0,2.27355476151302,0.443910671357348,0,0,6.45074531906083,0,0,0,0,0,0,0.443511850813194,0,0,0.135939465953663,0.526182188502793,0,0,0.078493092850514,0,0.280272163313789,0,0,0,0.78624198594322,0,0,0,0,0,4.95083583572455,177.653733086222,0,0,0,0,0,0,0,0,0,0,0,0,0,75.2852039241666,0,0,0.237840181555137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.387533459016037,0.496597714366863,0,0,0,3.04803447055746,2.73786640868225,0.26940821205835,0.0717222053926763,0,0,0,0,0,16.4248659682418,0,0.406896178315738,0,0.603821380773079,0 | |||
|short_description=p1@DSC1 | |||
}} |
Revision as of 17:11, 11 September 2013
Short description: | p1@DSC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_DSC1_5end |
Coexpression cluster: | C202_salivary_skin_penis_tongue_uterus_cervical_immature |
Association with transcript: | 122bp_to_ENST00000257197, ENST00000257198, NM_004948, NM_024421, uc002kwm.2, uc002kwn.2_5end |
EntrezGene: | DSC1 |
HGNC: | 3035 |
UniProt: | Q08554Q9HB00 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 1.77e-15 | 2 |
immature CD1a-positive Langerhans cell | 1.77e-15 | 2 |
acinar cell | 3.03e-13 | 5 |
keratinocyte | 3.16e-13 | 5 |
epidermal cell | 1.63e-12 | 9 |
protein secreting cell | 4.00e-11 | 6 |
stratified squamous epithelial cell | 4.14e-11 | 6 |
keratin accumulating cell | 4.14e-11 | 6 |
stratified epithelial cell | 4.14e-11 | 6 |
keratinizing barrier epithelial cell | 4.14e-11 | 6 |
epithelial fate stem cell | 4.14e-11 | 6 |
stratified epithelial stem cell | 4.14e-11 | 6 |
surface ectodermal cell | 4.14e-11 | 6 |
acinar cell of salivary gland | 1.28e-10 | 3 |
general ecto-epithelial cell | 4.30e-08 | 14 |
glandular epithelial cell | 1.43e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 1.62e-11 | 15 |
outer epithelium | 1.62e-11 | 15 |
enveloping layer of ectoderm | 1.62e-11 | 15 |
tongue | 2.98e-10 | 3 |
gustatory system | 2.98e-10 | 3 |
future tongue | 2.98e-10 | 3 |
surface | 1.05e-08 | 1 |
penis | 1.52e-08 | 1 |
intromittent organ | 1.52e-08 | 1 |
lateral plate mesenchyme | 1.52e-08 | 1 |
undifferentiated genital tubercle | 1.52e-08 | 1 |
somatopleure | 1.52e-08 | 1 |
zone of skin | 3.58e-08 | 4 |
ectoderm-derived structure | 4.17e-08 | 171 |
ectoderm | 4.17e-08 | 171 |
presumptive ectoderm | 4.17e-08 | 171 |
mitral valve | 5.43e-08 | 1 |
neocortex | 7.73e-08 | 20 |
regional part of cerebral cortex | 3.87e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.75e-08 | 1 |
keratoacanthoma | 1.75e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.