FFCP PHASE1:Hg19::chr17:7462297..7462342,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8741|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11928|TSSclassifier=W|UniProt=|association_with_transcript=193bp_to_ENST00000396545_5end|coexpression_cluster_id=C294|description=CAGE_peak_1_at_TNFSF13_5end|id=chr17:7462297..7462342,+|ontology_enrichment_celltype=CL:0000763!3.84e-44!112;CL:0000049!3.84e-44!112;CL:0000766!4.63e-42!76;CL:0000037!1.65e-39!172;CL:0000566!1.65e-39!172;CL:0002009!2.62e-38!65;CL:0002194!7.62e-38!63;CL:0000576!7.62e-38!63;CL:0000040!7.62e-38!63;CL:0000559!7.62e-38!63;CL:0000557!8.10e-38!71;CL:0000839!2.71e-37!70;CL:0002032!7.26e-36!165;CL:0000837!7.26e-36!165;CL:0000988!1.44e-34!182;CL:0000738!1.01e-33!140;CL:0002057!2.70e-33!42;CL:0000860!1.34e-29!45;CL:0002087!5.95e-28!119;CL:0002031!1.28e-27!124;CL:0002393!3.07e-09!9;CL:0002397!3.07e-09!9|ontology_enrichment_celltype_v019=CL:0000473;7.91e-28;39!CL:0000234;7.91e-28;39!CL:0000576;2.41e-27;48!CL:0000860;7.23e-27;33!CL:0002057;7.23e-27;33!CL:0000766;5.34e-21;69!CL:0000763;1.95e-14;100!CL:0002087;4.11e-10;104!CL:0000738;2.00e-09;136!CL:0000235;1.04e-07;6!CL:0002393;1.38e-07;6!CL:0002397;1.38e-07;6!CL:0000094;2.36e-07;8!CL:0000988;4.84e-07;177|ontology_enrichment_celltype_v019_2=CL:0000766,2.88e-50,72;CL:0002009,3.34e-50,61;CL:0002194,9.54e-50,59;CL:0000576,9.54e-50,59;CL:0000040,9.54e-50,59;CL:0000559,9.54e-50,59;CL:0000763,7.06e-48,108;CL:0000049,7.06e-48,108;CL:0000557,3.10e-45,67;CL:0000473,3.57e-45,48;CL:0000234,3.57e-45,48;CL:0000839,1.27e-44,66;CL:0000037,1.21e-42,168;CL:0000860,9.18e-39,42;CL:0002057,9.18e-39,42;CL:0002032,2.16e-38,161;CL:0000837,2.16e-38,161;CL:0000988,2.32e-38,177;CL:0000738,6.11e-38,136;CL:0002087,4.80e-35,115;CL:0002031,6.59e-32,120;CL:0002393,1.48e-10,9;CL:0002397,1.48e-10,9;CL:0000235,1.05e-07,6;CL:0000094,2.17e-07,8|ontology_enrichment_development_v019=CL:0002057;7.94e-28;42!CL:0000049;6.64e-14;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.00e-46!115;UBERON:0002390!9.60e-38!102;UBERON:0003061!9.60e-38!102;UBERON:0002193!1.74e-33!112;UBERON:0002371!1.39e-31!80;UBERON:0001474!2.64e-27!86;UBERON:0002405!4.93e-21!115;UBERON:0004765!1.94e-20!101;UBERON:0001434!1.94e-20!101;UBERON:0001049!1.28e-13!57;UBERON:0005068!1.28e-13!57;UBERON:0006241!1.28e-13!57;UBERON:0007135!1.28e-13!57;UBERON:0003080!1.47e-11!42;UBERON:0002780!4.28e-11!41;UBERON:0001890!4.28e-11!41;UBERON:0006240!4.28e-11!41;UBERON:0002616!7.84e-11!59;UBERON:0003081!1.67e-10!216;UBERON:0002020!2.28e-09!34;UBERON:0003528!2.28e-09!34;UBERON:0001893!3.88e-09!34;UBERON:0002791!7.53e-09!33;UBERON:0000955!9.63e-09!69;UBERON:0006238!9.63e-09!69;UBERON:0003075!1.91e-08!86;UBERON:0007284!1.91e-08!86;UBERON:0001869!2.70e-08!32;UBERON:0001017!5.74e-08!82;UBERON:0002346!9.97e-08!90;UBERON:0000479!1.40e-07!787;UBERON:0002204!1.43e-07!167;UBERON:0005743!1.64e-07!86;UBERON:0002619!1.82e-07!22;UBERON:0000178!3.03e-07!15;UBERON:0000179!3.03e-07!15;UBERON:0000463!3.03e-07!15|ontology_enrichment_uberon_v019=UBERON:0007023;4.38e-13;114!UBERON:0001893;5.69e-09;34!UBERON:0002780;6.14e-09;41!UBERON:0001890;6.14e-09;41!UBERON:0003528;9.15e-09;34!UBERON:0002020;9.15e-09;34!UBERON:0000073;1.08e-08;53!UBERON:0002616;1.08e-08;53!UBERON:0000178;1.45e-08;15!UBERON:0000179;1.45e-08;15!UBERON:0000463;1.45e-08;15!UBERON:0002791;1.85e-08;32!UBERON:0001869;2.75e-08;32!UBERON:0002619;6.04e-08;22!UBERON:0001950;6.99e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.93e-51,114;UBERON:0002390,3.25e-46,98;UBERON:0003061,3.25e-46,98;UBERON:0002193,1.06e-41,108;UBERON:0002371,2.05e-38,76;UBERON:0002405,9.65e-34,93;UBERON:0001474,1.05e-33,82;UBERON:0004765,1.84e-28,90;UBERON:0001434,5.04e-24,100;UBERON:0003081,7.27e-17,203;UBERON:0001049,1.52e-14,56;UBERON:0005068,1.52e-14,56;UBERON:0006241,1.52e-14,56;UBERON:0007135,1.52e-14,56;UBERON:0000073,5.83e-14,53;UBERON:0002616,5.83e-14,53;UBERON:0002780,9.42e-12,41;UBERON:0001890,9.42e-12,41;UBERON:0003080,9.42e-12,41;UBERON:0006240,9.42e-12,41;UBERON:0003528,2.00e-10,34;UBERON:0002020,2.00e-10,34;UBERON:0001893,3.69e-10,34;UBERON:0002791,2.10e-09,32;UBERON:0000955,2.45e-09,68;UBERON:0006238,2.45e-09,68;UBERON:0000479,2.72e-09,773;UBERON:0001869,3.50e-09,32;UBERON:0003075,1.15e-08,82;UBERON:0007284,1.15e-08,82;UBERON:0000178,1.43e-08,15;UBERON:0000179,1.43e-08,15;UBERON:0000463,1.43e-08,15;UBERON:0001017,1.77e-08,81;UBERON:0002204,2.68e-08,167;UBERON:0002619,6.60e-08,22;UBERON:0002346,1.06e-07,86;UBERON:0001016,7.23e-07,89;UBERON:0001950,7.79e-07,20|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.491467873003018,2.09340350391728,0,0,0,0,4.03395087871065,0,0,0,0,0,0,0,0,0,0,0,0,138.070861173965,61.0288742974568,132.677417681877,0,0,0,0,0,28.1856421761453,125.202962328204,101.676034867362,113.279674513675,249.889669251756,205.024690590014,236.454371088183,48.2722152748155,32.8752071009264,40.7541222795531,46.7182364180426,22.2030659531786,41.1909473290488,55.23693932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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8741 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11928 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=193bp_to_ENST00000396545_5end | |||
|coexpression_cluster_id=C294 | |||
|description=CAGE_peak_1_at_TNFSF13_5end | |||
|id=chr17:7462297..7462342,+ | |||
|ontology_enrichment_celltype=CL:0000763!3.84e-44!112;CL:0000049!3.84e-44!112;CL:0000766!4.63e-42!76;CL:0000037!1.65e-39!172;CL:0000566!1.65e-39!172;CL:0002009!2.62e-38!65;CL:0002194!7.62e-38!63;CL:0000576!7.62e-38!63;CL:0000040!7.62e-38!63;CL:0000559!7.62e-38!63;CL:0000557!8.10e-38!71;CL:0000839!2.71e-37!70;CL:0002032!7.26e-36!165;CL:0000837!7.26e-36!165;CL:0000988!1.44e-34!182;CL:0000738!1.01e-33!140;CL:0002057!2.70e-33!42;CL:0000860!1.34e-29!45;CL:0002087!5.95e-28!119;CL:0002031!1.28e-27!124;CL:0002393!3.07e-09!9;CL:0002397!3.07e-09!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;7.91e-28;39!CL:0000234;7.91e-28;39!CL:0000576;2.41e-27;48!CL:0000860;7.23e-27;33!CL:0002057;7.23e-27;33!CL:0000766;5.34e-21;69!CL:0000763;1.95e-14;100!CL:0002087;4.11e-10;104!CL:0000738;2.00e-09;136!CL:0000235;1.04e-07;6!CL:0002393;1.38e-07;6!CL:0002397;1.38e-07;6!CL:0000094;2.36e-07;8!CL:0000988;4.84e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.88e-50,72;CL:0002009,3.34e-50,61;CL:0002194,9.54e-50,59;CL:0000576,9.54e-50,59;CL:0000040,9.54e-50,59;CL:0000559,9.54e-50,59;CL:0000763,7.06e-48,108;CL:0000049,7.06e-48,108;CL:0000557,3.10e-45,67;CL:0000473,3.57e-45,48;CL:0000234,3.57e-45,48;CL:0000839,1.27e-44,66;CL:0000037,1.21e-42,168;CL:0000860,9.18e-39,42;CL:0002057,9.18e-39,42;CL:0002032,2.16e-38,161;CL:0000837,2.16e-38,161;CL:0000988,2.32e-38,177;CL:0000738,6.11e-38,136;CL:0002087,4.80e-35,115;CL:0002031,6.59e-32,120;CL:0002393,1.48e-10,9;CL:0002397,1.48e-10,9;CL:0000235,1.05e-07,6;CL:0000094,2.17e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;7.94e-28;42!CL:0000049;6.64e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.00e-46!115;UBERON:0002390!9.60e-38!102;UBERON:0003061!9.60e-38!102;UBERON:0002193!1.74e-33!112;UBERON:0002371!1.39e-31!80;UBERON:0001474!2.64e-27!86;UBERON:0002405!4.93e-21!115;UBERON:0004765!1.94e-20!101;UBERON:0001434!1.94e-20!101;UBERON:0001049!1.28e-13!57;UBERON:0005068!1.28e-13!57;UBERON:0006241!1.28e-13!57;UBERON:0007135!1.28e-13!57;UBERON:0003080!1.47e-11!42;UBERON:0002780!4.28e-11!41;UBERON:0001890!4.28e-11!41;UBERON:0006240!4.28e-11!41;UBERON:0002616!7.84e-11!59;UBERON:0003081!1.67e-10!216;UBERON:0002020!2.28e-09!34;UBERON:0003528!2.28e-09!34;UBERON:0001893!3.88e-09!34;UBERON:0002791!7.53e-09!33;UBERON:0000955!9.63e-09!69;UBERON:0006238!9.63e-09!69;UBERON:0003075!1.91e-08!86;UBERON:0007284!1.91e-08!86;UBERON:0001869!2.70e-08!32;UBERON:0001017!5.74e-08!82;UBERON:0002346!9.97e-08!90;UBERON:0000479!1.40e-07!787;UBERON:0002204!1.43e-07!167;UBERON:0005743!1.64e-07!86;UBERON:0002619!1.82e-07!22;UBERON:0000178!3.03e-07!15;UBERON:0000179!3.03e-07!15;UBERON:0000463!3.03e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;4.38e-13;114!UBERON:0001893;5.69e-09;34!UBERON:0002780;6.14e-09;41!UBERON:0001890;6.14e-09;41!UBERON:0003528;9.15e-09;34!UBERON:0002020;9.15e-09;34!UBERON:0000073;1.08e-08;53!UBERON:0002616;1.08e-08;53!UBERON:0000178;1.45e-08;15!UBERON:0000179;1.45e-08;15!UBERON:0000463;1.45e-08;15!UBERON:0002791;1.85e-08;32!UBERON:0001869;2.75e-08;32!UBERON:0002619;6.04e-08;22!UBERON:0001950;6.99e-07;20 | |||
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| |||
|short_description=p1@TNFSF13 | |||
}} |
Revision as of 15:50, 11 September 2013
Short description: | p1@TNFSF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TNFSF13_5end |
Coexpression cluster: | C294_CD14_Macrophage_Monocytederived_CD14CD16_Neutrophils_Basophils_Peripheral |
Association with transcript: | 193bp_to_ENST00000396545_5end |
EntrezGene: | TNFSF13 |
HGNC: | 11928 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.88e-50 | 72 |
macrophage dendritic cell progenitor | 3.34e-50 | 61 |
monopoietic cell | 9.54e-50 | 59 |
monocyte | 9.54e-50 | 59 |
monoblast | 9.54e-50 | 59 |
promonocyte | 9.54e-50 | 59 |
myeloid cell | 7.06e-48 | 108 |
common myeloid progenitor | 7.06e-48 | 108 |
granulocyte monocyte progenitor cell | 3.10e-45 | 67 |
defensive cell | 3.57e-45 | 48 |
phagocyte | 3.57e-45 | 48 |
myeloid lineage restricted progenitor cell | 1.27e-44 | 66 |
hematopoietic stem cell | 1.21e-42 | 168 |
classical monocyte | 9.18e-39 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.18e-39 | 42 |
hematopoietic oligopotent progenitor cell | 2.16e-38 | 161 |
hematopoietic multipotent progenitor cell | 2.16e-38 | 161 |
hematopoietic cell | 2.32e-38 | 177 |
leukocyte | 6.11e-38 | 136 |
nongranular leukocyte | 4.80e-35 | 115 |
hematopoietic lineage restricted progenitor cell | 6.59e-32 | 120 |
intermediate monocyte | 1.48e-10 | 9 |
CD14-positive, CD16-positive monocyte | 1.48e-10 | 9 |
macrophage | 1.05e-07 | 6 |
granulocyte | 2.17e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.