FFCP PHASE1:Hg19::chr17:5675533..5675539,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=339166|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=W|UniProt=|association_with_transcript=-14bp_to_NR_040000,uc002gcm.2_5end|description=CAGE_peak_1_at_LOC339166_5end|id=chr17:5675533..5675539,+|ontology_enrichment_celltype=CL:0000039!1.68e-09!7;CL:0000586!1.68e-09!7|ontology_enrichment_celltype_v019=CL:0000039;2.07e-26;7!CL:0000586;2.07e-26;7!CL:0002149;5.56e-09;6!CL:0002255;5.56e-09;6!CL:0002573;9.84e-08;2!CL:0002379;4.09e-07;1|ontology_enrichment_celltype_v019_2=CL:0000039,1.52e-26,7;CL:0000586,1.52e-26,7;CL:0002149,5.64e-09,6;CL:0002255,5.64e-09,6;CL:0002573,8.00e-08,2;CL:0002379,4.09e-07,1|ontology_enrichment_development_v019=UBERON:0009117;1.84e-18;10!UBERON:0005564;1.84e-18;10|ontology_enrichment_disease=DOID:0050687!6.44e-08!143|ontology_enrichment_disease_v019=DOID:3001;5.56e-09;6!DOID:3095;4.93e-08;22!DOID:2994;4.93e-08;22!DOID:3620;4.09e-07;1!DOID:3565;4.09e-07;1!DOID:3347;4.33e-07;1!DOID:0060085;6.25e-07;1!DOID:3165;6.25e-07;1!DOID:0060121;6.25e-07;1!DOID:2438;6.25e-07;1!DOID:4418;6.25e-07;1|ontology_enrichment_disease_v019_2=DOID:3001,5.64e-09,6;DOID:0050687,3.48e-08,143;DOID:3095,4.49e-08,22;DOID:2994,4.49e-08,22;DOID:14566,1.34e-07,239;DOID:3620,4.09e-07,1;DOID:3565,4.09e-07,1;DOID:3347,4.33e-07,1;DOID:0060085,6.08e-07,1;DOID:3165,6.08e-07,1;DOID:0060121,6.08e-07,1;DOID:2438,6.08e-07,1;DOID:4418,6.08e-07,1|ontology_enrichment_uberon=UBERON:0000473!2.85e-08!8;UBERON:0003135!2.29e-07!11;UBERON:0003133!3.39e-07!48|ontology_enrichment_uberon_v019=UBERON:0000473;3.34e-23;8!UBERON:0003135;9.80e-17;11!UBERON:0000991;2.29e-11;21!UBERON:0003133;1.75e-09;44!UBERON:0003101;4.37e-08;22!UBERON:0000079;4.37e-08;22|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.78e-23,8;UBERON:0003135,6.25e-17,11;UBERON:0000991,1.89e-11,21;UBERON:0009196,1.89e-11,21;UBERON:0009117,1.89e-11,21;UBERON:0005564,1.89e-11,21;UBERON:0003133,2.01e-11,48;UBERON:0004176,6.89e-11,22;UBERON:0005156,6.63e-09,59;UBERON:0000990,6.63e-09,59;UBERON:0003101,3.54e-08,22;UBERON:0000079,3.54e-08,22;UBERON:0004458,2.68e-07,49|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0.487932798790507,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0.087834785693126,2.16115474571226,0,0,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,1.48000529050296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0.116193942869518,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,1.87467667973554,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514414748524284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0,0,0,0.451199612907412,0,0,0,0.73886140225013,0,0,0,0,0,0.501689773854853,0.254876273045038,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0.170453254832202,0,0,0,0.127612712494584,0,0,0,0,0,1.06461206063404,0,0,0,0,0.632758849437452,0.190630193923825,0,0,0,0,0.359744915166629,0,0,0.808729926293264,1.58510321173008,0.421258456238981,0,0,0,0,0,0,0,0.66343897524122,2.19225442626881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,1.19548792950642,0,0.251932747854276,0,0,0,0.449341755736634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0.295547618953547,0,0,0.139423744278603,0,0.341826167541004,0,6.01376217545473,1.08647371922008,0,0,0,0,0,0,0,0,0.335643173951685,0,0,0.632994193584081,0,0,0,0,0,0,2.96521128680622,0.988511511572023,1.14864144456001,0,0,0,0,2.34797542718508,0,0,0,0,0,22.8491597510029,0,0,0,0.313932918407225,0,30.168611879158,0,0,0,5.13649318824375,0.17472666824203,1.0319161948297,0,0.0730893170861856,0,0,0,0,3.70013196546227,6.75629679790165,0,0.195551382734803,0.320635281006135,0.213452994739353,0.799238438328521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,2.03961764736226,0.146552233678082,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,94.1063278792687,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,1.08684069813382,0,0,0,0.150257608997218,0,0,0,0.644463342254931,0,0,0,0,0,1.26184898228651,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=339166 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-14bp_to_NR_040000,uc002gcm.2_5end | |||
|description=CAGE_peak_1_at_LOC339166_5end | |||
|id=chr17:5675533..5675539,+ | |||
|ontology_enrichment_celltype=CL:0000039!1.68e-09!7;CL:0000586!1.68e-09!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.07e-26;7!CL:0000586;2.07e-26;7!CL:0002149;5.56e-09;6!CL:0002255;5.56e-09;6!CL:0002573;9.84e-08;2!CL:0002379;4.09e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.52e-26,7;CL:0000586,1.52e-26,7;CL:0002149,5.64e-09,6;CL:0002255,5.64e-09,6;CL:0002573,8.00e-08,2;CL:0002379,4.09e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.84e-18;10!UBERON:0005564;1.84e-18;10 | |||
|ontology_enrichment_disease=DOID:0050687!6.44e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:3001;5.56e-09;6!DOID:3095;4.93e-08;22!DOID:2994;4.93e-08;22!DOID:3620;4.09e-07;1!DOID:3565;4.09e-07;1!DOID:3347;4.33e-07;1!DOID:0060085;6.25e-07;1!DOID:3165;6.25e-07;1!DOID:0060121;6.25e-07;1!DOID:2438;6.25e-07;1!DOID:4418;6.25e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,5.64e-09,6;DOID:0050687,3.48e-08,143;DOID:3095,4.49e-08,22;DOID:2994,4.49e-08,22;DOID:14566,1.34e-07,239;DOID:3620,4.09e-07,1;DOID:3565,4.09e-07,1;DOID:3347,4.33e-07,1;DOID:0060085,6.08e-07,1;DOID:3165,6.08e-07,1;DOID:0060121,6.08e-07,1;DOID:2438,6.08e-07,1;DOID:4418,6.08e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.85e-08!8;UBERON:0003135!2.29e-07!11;UBERON:0003133!3.39e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.34e-23;8!UBERON:0003135;9.80e-17;11!UBERON:0000991;2.29e-11;21!UBERON:0003133;1.75e-09;44!UBERON:0003101;4.37e-08;22!UBERON:0000079;4.37e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.78e-23,8;UBERON:0003135,6.25e-17,11;UBERON:0000991,1.89e-11,21;UBERON:0009196,1.89e-11,21;UBERON:0009117,1.89e-11,21;UBERON:0005564,1.89e-11,21;UBERON:0003133,2.01e-11,48;UBERON:0004176,6.89e-11,22;UBERON:0005156,6.63e-09,59;UBERON:0000990,6.63e-09,59;UBERON:0003101,3.54e-08,22;UBERON:0000079,3.54e-08,22;UBERON:0004458,2.68e-07,49 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0.487932798790507,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0.087834785693126,2.16115474571226,0,0,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,1.48000529050296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0.116193942869518,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,1.87467667973554,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514414748524284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0,0,0,0.451199612907412,0,0,0,0.73886140225013,0,0,0,0,0,0.501689773854853,0.254876273045038,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0.170453254832202,0,0,0,0.127612712494584,0,0,0,0,0,1.06461206063404,0,0,0,0,0.632758849437452,0.190630193923825,0,0,0,0,0.359744915166629,0,0,0.808729926293264,1.58510321173008,0.421258456238981,0,0,0,0,0,0,0,0.66343897524122,2.19225442626881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,1.19548792950642,0,0.251932747854276,0,0,0,0.449341755736634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0.295547618953547,0,0,0.139423744278603,0,0.341826167541004,0,6.01376217545473,1.08647371922008,0,0,0,0,0,0,0,0,0.335643173951685,0,0,0.632994193584081,0,0,0,0,0,0,2.96521128680622,0.988511511572023,1.14864144456001,0,0,0,0,2.34797542718508,0,0,0,0,0,22.8491597510029,0,0,0,0.313932918407225,0,30.168611879158,0,0,0,5.13649318824375,0.17472666824203,1.0319161948297,0,0.0730893170861856,0,0,0,0,3.70013196546227,6.75629679790165,0,0.195551382734803,0.320635281006135,0.213452994739353,0.799238438328521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,2.03961764736226,0.146552233678082,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,94.1063278792687,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,1.08684069813382,0,0,0,0.150257608997218,0,0,0,0.644463342254931,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0.489473409012935,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0.213383459388282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,56.6095139369283,0,0,29.852350168121,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0.127762427639595,0,0,0,0,0.975726071789027,0,0,0.543757863814654,0,0.118193840883968,0,0,0,0,0,0.215927591218621,0,0,0,0,0.347716544605159,0,0,0,0,0,1.77498001095848,1.44862788090568,0,0,4.03268301363616,7.64431151181946,0,0,0,0,0,2.3196288626764,0.485710993059139,0,0,0.118920090777569,0,0.109940516745429,0.301925687133347,0,0,0,0,0,0.588925401344836,0,0,1.18948980281472,0,0,0,0,0,0,0,0,0,42.2827786677735,0,0.436350690340377,0,0,0,0,0.126166424835079,0.218531143927391,0,1.83579893535567,1.60330443159336,3.6757959813938,1.50424523575425,2.95536923051134,4.55539021265503,0,0,0,0,0.258355639344024,0,0.224263725161227,0,0,0,0,0.471464371102113,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p1@LOC339166 | |||
}} |
Revision as of 14:49, 11 September 2013
Short description: | p1@LOC339166 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LOC339166_5end |
Coexpression cluster: | NA |
Association with transcript: | -14bp_to_NR_040000, uc002gcm.2_5end |
EntrezGene: | LOC339166 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.52e-26 | 7 |
germ cell | 1.52e-26 | 7 |
epithelial cell of uterus | 5.64e-09 | 6 |
stromal cell of endometrium | 5.64e-09 | 6 |
Schwann cell | 8.00e-08 | 2 |
meningothelial cell | 4.09e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
testis | 1.78e-23 | 8 |
male reproductive organ | 6.25e-17 | 11 |
gonad | 1.89e-11 | 21 |
indifferent external genitalia | 1.89e-11 | 21 |
indifferent gonad | 1.89e-11 | 21 |
gonad primordium | 1.89e-11 | 21 |
reproductive organ | 2.01e-11 | 48 |
external genitalia | 6.89e-11 | 22 |
reproductive structure | 6.63e-09 | 59 |
reproductive system | 6.63e-09 | 59 |
male organism | 3.54e-08 | 22 |
male reproductive system | 3.54e-08 | 22 |
body cavity or lining | 2.68e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 5.64e-09 | 6 |
cell type cancer | 3.48e-08 | 143 |
germ cell and embryonal cancer | 4.49e-08 | 22 |
germ cell cancer | 4.49e-08 | 22 |
disease of cellular proliferation | 1.34e-07 | 239 |
central nervous system cancer | 4.09e-07 | 1 |
meningioma | 4.09e-07 | 1 |
osteosarcoma | 4.33e-07 | 1 |
organ system benign neoplasm | 6.08e-07 | 1 |
skin benign neoplasm | 6.08e-07 | 1 |
integumentary system benign neoplasm | 6.08e-07 | 1 |
dermis tumor | 6.08e-07 | 1 |
cutaneous fibrous histiocytoma | 6.08e-07 | 1 |
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