FFCP PHASE1:Hg19::chr17:45973586..45973618,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6668|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11207|TSSclassifier=S|UniProt=Q9BRW5,Q02086|association_with_transcript=70bp_to_ENST00000322172,ENST00000376741,NM_003110,uc002imk.2_5end|description=CAGE_peak_1_at_SP2_5end|id=chr17:45973586..45973618,+|ontology_enrichment_celltype=CL:0000738!5.89e-17!140;CL:0000988!1.30e-14!182;CL:0000037!1.44e-14!172;CL:0000566!1.44e-14!172;CL:0002031!2.32e-14!124;CL:0002032!2.41e-14!165;CL:0000837!2.41e-14!165;CL:0002057!6.19e-14!42;CL:0000860!6.91e-14!45;CL:0000766!2.57e-13!76;CL:0002087!1.20e-12!119;CL:0000839!9.63e-11!70;CL:0000763!3.23e-10!112;CL:0000049!3.23e-10!112;CL:0000557!2.51e-09!71;CL:0002009!2.40e-08!65;CL:0002194!2.65e-08!63;CL:0000576!2.65e-08!63;CL:0000040!2.65e-08!63;CL:0000559!2.65e-08!63|ontology_enrichment_celltype_v019=CL:0000860;1.09e-15;33!CL:0002057;1.09e-15;33!CL:0000473;2.12e-10;39!CL:0000234;2.12e-10;39!CL:0000576;2.41e-08;48!CL:0000766;2.38e-07;69|ontology_enrichment_celltype_v019_2=CL:0000738,1.14e-16,136;CL:0000988,1.38e-14,177;CL:0000037,2.97e-14,168;CL:0002031,4.33e-14,120;CL:0002032,4.90e-14,161;CL:0000837,4.90e-14,161;CL:0000860,6.19e-14,42;CL:0002057,6.19e-14,42;CL:0000766,3.84e-13,72;CL:0002087,2.23e-12,115;CL:0000473,3.67e-11,48;CL:0000234,3.67e-11,48;CL:0000839,1.51e-10,66;CL:0000763,5.96e-10,108;CL:0000049,5.96e-10,108;CL:0000557,4.16e-09,67;CL:0002009,3.98e-08,61;CL:0002194,4.35e-08,59;CL:0000576,4.35e-08,59;CL:0000040,4.35e-08,59;CL:0000559,4.35e-08,59|ontology_enrichment_development_v019=CL:0002057;1.18e-10;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!5.34e-19!115;UBERON:0002390!6.41e-13!102;UBERON:0003061!6.41e-13!102;UBERON:0002193!7.41e-13!112;UBERON:0002371!8.58e-08!80;UBERON:0001474!1.36e-07!86;UBERON:0002405!1.43e-07!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.76e-19,114;UBERON:0002390,1.13e-12,98;UBERON:0003061,1.13e-12,98;UBERON:0002193,1.35e-12,108;UBERON:0002405,7.14e-09,93;UBERON:0002371,1.51e-07,76;UBERON:0001474,2.41e-07,82|phase1_expression=6.90377841228115,10.4909256706582,6.90676580070259,5.00366491765652,8.93922188854576,5.23403114460221,5.06599756336621,6.94891860769514,5.74608382039645,13.515366507583,28.6098478868695,15.5093374212422,11.3419800638235,7.79728023648294,6.95934489028623,6.72325146451775,6.62963980826375,6.57279081348636,4.39139518911456,21.0537009311307,17.3400587557615,18.1803738457291,7.72837165253853,9.85495860524766,8.28581421325698,19.1033514369878,18.6368338051377,18.3396120460873,25.1753137183299,19.5752993029578,33.5950987595885,8.27479102031034,11.4458249135735,10.3531122846701,14.2539649067755,11.9422155289434,10.5696158160545,27.145775018062,30.8838449104018,24.7392392616071,9.1805344438369,15.546895968911,19.318167572564,32.8600019641816,39.676974087325,33.2340163827308,40.6750814584948,49.3401465626191,42.4297728126292,37.9753957865239,34.5816953814286,23.4117407589699,43.0932100920773,42.6019891165325,35.2108865145289,29.7422896477315,30.2925826564209,19.3262196622773,39.4848221158464,33.3766188159137,34.5242047931482,32.3254274182982,32.1136488770827,32.3930810404848,43.5313857942876,59.0080633678785,63.5278693975486,33.9185698096603,28.1600775946909,26.2798502093191,33.9023721474687,34.2498201468435,29.1145396445614,9.29523259772544,9.779797798392,6.9187353017764,13.9287502621654,11.7137976416375,27.1626241518065,7.12531859353121,15.515500821529,11.5078416871719,10.5597746676794,14.1996038928154,12.4531295540898,17.4959391252268,14.8146515203325,20.1163353984069,15.8650769468367,11.4486450544244,26.1837965790346,36.4087057409982,38.2273228125229,9.25199300053181,25.2228853341691,10.5353633910031,37.1781465515145,20.8295704257057,24.0553753829426,17.0530225298492,22.1627141310841,23.1989424810019,13.6378709885538,17.3800312740871,17.3817485410154,14.1781692533518,22.4767206924963,15.4990496868067,15.3470030120656,15.2927251281419,9.119550586933,19.9964129157186,21.6498382216608,23.5435928718948,24.0431704751447,16.6564733765422,20.6939066545037,17.1813722741315,22.5187525897358,10.5126586726952,13.0216690771284,16.1576847556224,21.8333922662771,19.7099381177804,9.99445812418767,19.1789574155654,19.7070719261051,31.2490451998335,24.8719382078662,31.8613688542158,4.87613732627923,3.35350429851818,5.4980901592718,10.4817354191524,9.5254203020819,8.69079113764942,25.4491503056352,9.73269740605272,6.99557647014102,8.86917589850256,6.58760892698445,27.0471790902777,13.8432209551166,12.2358866118862,6.16640047943898,5.04976238167875,7.44564578905645,14.3094374583205,12.5838880371628,14.486842551853,14.1121309230361,12.9035189265919,13.5384795626962,12.4367747223282,13.8434813949269,11.5549577614828,13.5846728248927,5.68516870172524,11.7402866686614,13.3888245105868,17.7244899528025,9.88353737434066,17.5724681434682,10.6622293300302,8.1014194788176,9.19787201326022,13.247232984944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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6668 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11207 | |||
|TSSclassifier=S | |||
|UniProt=Q9BRW5,Q02086 | |||
|association_with_transcript=70bp_to_ENST00000322172,ENST00000376741,NM_003110,uc002imk.2_5end | |||
|description=CAGE_peak_1_at_SP2_5end | |||
|id=chr17:45973586..45973618,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.89e-17!140;CL:0000988!1.30e-14!182;CL:0000037!1.44e-14!172;CL:0000566!1.44e-14!172;CL:0002031!2.32e-14!124;CL:0002032!2.41e-14!165;CL:0000837!2.41e-14!165;CL:0002057!6.19e-14!42;CL:0000860!6.91e-14!45;CL:0000766!2.57e-13!76;CL:0002087!1.20e-12!119;CL:0000839!9.63e-11!70;CL:0000763!3.23e-10!112;CL:0000049!3.23e-10!112;CL:0000557!2.51e-09!71;CL:0002009!2.40e-08!65;CL:0002194!2.65e-08!63;CL:0000576!2.65e-08!63;CL:0000040!2.65e-08!63;CL:0000559!2.65e-08!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.09e-15;33!CL:0002057;1.09e-15;33!CL:0000473;2.12e-10;39!CL:0000234;2.12e-10;39!CL:0000576;2.41e-08;48!CL:0000766;2.38e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.14e-16,136;CL:0000988,1.38e-14,177;CL:0000037,2.97e-14,168;CL:0002031,4.33e-14,120;CL:0002032,4.90e-14,161;CL:0000837,4.90e-14,161;CL:0000860,6.19e-14,42;CL:0002057,6.19e-14,42;CL:0000766,3.84e-13,72;CL:0002087,2.23e-12,115;CL:0000473,3.67e-11,48;CL:0000234,3.67e-11,48;CL:0000839,1.51e-10,66;CL:0000763,5.96e-10,108;CL:0000049,5.96e-10,108;CL:0000557,4.16e-09,67;CL:0002009,3.98e-08,61;CL:0002194,4.35e-08,59;CL:0000576,4.35e-08,59;CL:0000040,4.35e-08,59;CL:0000559,4.35e-08,59 | |||
|ontology_enrichment_development_v019=CL:0002057;1.18e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.34e-19!115;UBERON:0002390!6.41e-13!102;UBERON:0003061!6.41e-13!102;UBERON:0002193!7.41e-13!112;UBERON:0002371!8.58e-08!80;UBERON:0001474!1.36e-07!86;UBERON:0002405!1.43e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.76e-19,114;UBERON:0002390,1.13e-12,98;UBERON:0003061,1.13e-12,98;UBERON:0002193,1.35e-12,108;UBERON:0002405,7.14e-09,93;UBERON:0002371,1.51e-07,76;UBERON:0001474,2.41e-07,82 | |||
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| |||
|short_description=p1@SP2 | |||
}} |
Revision as of 14:10, 11 September 2013
Short description: | p1@SP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 70bp_to_ENST00000322172, ENST00000376741, NM_003110, uc002imk.2_5end |
EntrezGene: | SP2 |
HGNC: | 11207 |
UniProt: | Q9BRW5Q02086 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.14e-16 | 136 |
hematopoietic cell | 1.38e-14 | 177 |
hematopoietic stem cell | 2.97e-14 | 168 |
hematopoietic lineage restricted progenitor cell | 4.33e-14 | 120 |
hematopoietic oligopotent progenitor cell | 4.90e-14 | 161 |
hematopoietic multipotent progenitor cell | 4.90e-14 | 161 |
classical monocyte | 6.19e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.19e-14 | 42 |
myeloid leukocyte | 3.84e-13 | 72 |
nongranular leukocyte | 2.23e-12 | 115 |
defensive cell | 3.67e-11 | 48 |
phagocyte | 3.67e-11 | 48 |
myeloid lineage restricted progenitor cell | 1.51e-10 | 66 |
myeloid cell | 5.96e-10 | 108 |
common myeloid progenitor | 5.96e-10 | 108 |
granulocyte monocyte progenitor cell | 4.16e-09 | 67 |
macrophage dendritic cell progenitor | 3.98e-08 | 61 |
monopoietic cell | 4.35e-08 | 59 |
monocyte | 4.35e-08 | 59 |
monoblast | 4.35e-08 | 59 |
promonocyte | 4.35e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.76e-19 | 114 |
hematopoietic system | 1.13e-12 | 98 |
blood island | 1.13e-12 | 98 |
hemolymphoid system | 1.35e-12 | 108 |
immune system | 7.14e-09 | 93 |
bone marrow | 1.51e-07 | 76 |
bone element | 2.41e-07 | 82 |
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