FFCP PHASE1:Hg19::chr17:29718653..29718656,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84440|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30267|TSSclassifier=S|UniProt=Q86YS3|association_with_transcript=11bp_to_ENST00000325874,ENST00000394744,NM_032932,uc002hgn.1_5end|coexpression_cluster_id=C3|description=CAGE_peak_10_at_RAB11FIP4_5end|id=chr17:29718653..29718656,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.95e-52!57;UBERON:0005068!2.95e-52!57;UBERON:0006241!2.95e-52!57;UBERON:0007135!2.95e-52!57;UBERON:0001017!3.37e-52!82;UBERON:0005743!4.81e-52!86;UBERON:0000073!8.97e-49!94;UBERON:0001016!8.97e-49!94;UBERON:0000955!1.00e-46!69;UBERON:0006238!1.00e-46!69;UBERON:0003075!4.34e-44!86;UBERON:0007284!4.34e-44!86;UBERON:0002616!2.38e-43!59;UBERON:0001893!6.75e-42!34;UBERON:0002020!9.59e-42!34;UBERON:0003528!9.59e-42!34;UBERON:0002346!9.98e-42!90;UBERON:0001869!1.11e-40!32;UBERON:0002619!1.17e-39!22;UBERON:0002791!3.93e-39!33;UBERON:0002780!2.58e-37!41;UBERON:0001890!2.58e-37!41;UBERON:0006240!2.58e-37!41;UBERON:0003080!2.66e-36!42;UBERON:0000956!1.48e-34!25;UBERON:0000203!1.48e-34!25;UBERON:0001950!7.66e-34!20;UBERON:0003056!3.84e-30!61;UBERON:0000033!1.30e-27!123;UBERON:0000153!6.51e-26!129;UBERON:0007811!6.51e-26!129;UBERON:0004121!6.96e-26!169;UBERON:0007023!1.82e-25!115;UBERON:0000924!4.70e-25!173;UBERON:0006601!4.70e-25!173;UBERON:0000200!3.99e-20!6;UBERON:0003076!1.09e-16!15;UBERON:0003057!1.09e-16!15;UBERON:0001871!2.17e-14!7;UBERON:0004733!1.19e-12!12;UBERON:0002028!1.19e-12!12;UBERON:0007277!1.19e-12!12;UBERON:0000025!1.66e-12!194;UBERON:0004732!1.35e-11!13;UBERON:0000349!4.80e-11!5;UBERON:0000988!1.25e-10!3;UBERON:0002771!2.73e-10!3;UBERON:0002298!4.02e-10!8;UBERON:0000064!6.42e-10!219;UBERON:0002680!4.05e-09!9;UBERON:0001895!4.05e-09!9;UBERON:0010092!4.05e-09!9;UBERON:0000483!5.50e-09!309;UBERON:0002308!7.83e-09!9;UBERON:0000125!7.83e-09!9;UBERON:0000119!8.29e-09!312;UBERON:0004111!1.84e-08!241;UBERON:0001870!2.94e-08!2;UBERON:0001954!6.07e-08!2;UBERON:0003022!6.07e-08!2;UBERON:0002421!6.07e-08!2;UBERON:0002600!6.07e-08!2;UBERON:0000475!7.16e-08!365;UBERON:0002148!1.27e-07!2;UBERON:0009662!1.27e-07!2;UBERON:0002021!3.49e-07!5;UBERON:0001872!5.12e-07!5|ontology_enrichment_uberon_v019=UBERON:0001950;2.40e-47;20!UBERON:0002619;2.59e-43;22!UBERON:0000956;2.01e-38;25!UBERON:0000203;2.01e-38;25!UBERON:0002021;1.69e-32;5!UBERON:0002791;4.38e-31;32!UBERON:0001869;5.18e-29;32!UBERON:0003528;1.66e-25;34!UBERON:0002020;1.66e-25;34!UBERON:0001893;1.57e-22;34!UBERON:0002702;4.66e-21;2!UBERON:0002780;1.02e-20;41!UBERON:0001890;1.02e-20;41!UBERON:0001870;1.60e-14;3!UBERON:0000073;5.94e-12;53!UBERON:0002616;5.94e-12;53!UBERON:0001872;2.97e-09;5!UBERON:0000200;6.33e-08;6!UBERON:0001871;5.70e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0001950,2.41e-47,20;UBERON:0002619,2.60e-43,22;UBERON:0000956,2.01e-38,25;UBERON:0000203,2.01e-38,25;UBERON:0002021,1.99e-32,5;UBERON:0002791,1.83e-30,32;UBERON:0001869,1.83e-30,32;UBERON:0003528,9.00e-29,34;UBERON:0002020,9.00e-29,34;UBERON:0001893,9.00e-29,34;UBERON:0002780,4.07e-24,41;UBERON:0001890,4.07e-24,41;UBERON:0003080,4.07e-24,41;UBERON:0006240,4.07e-24,41;UBERON:0002702,3.11e-21,2;UBERON:0000073,6.22e-19,53;UBERON:0002616,6.22e-19,53;UBERON:0001049,5.63e-18,56;UBERON:0005068,5.63e-18,56;UBERON:0006241,5.63e-18,56;UBERON:0007135,5.63e-18,56;UBERON:0003056,1.38e-16,61;UBERON:0000955,9.02e-15,68;UBERON:0006238,9.02e-15,68;UBERON:0001870,1.22e-14,3;UBERON:0001017,1.45e-12,81;UBERON:0003075,1.45e-12,82;UBERON:0007284,1.45e-12,82;UBERON:0002346,5.13e-12,86;UBERON:0001016,2.13e-11,89;UBERON:0010371,4.61e-10,104;UBERON:0001872,3.22e-09,5;UBERON:0010314,4.60e-08,132;UBERON:0000200,5.54e-08,6;UBERON:0001871,5.70e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502548796003046,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84440 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30267 | |||
|TSSclassifier=S | |||
|UniProt=Q86YS3 | |||
|association_with_transcript=11bp_to_ENST00000325874,ENST00000394744,NM_032932,uc002hgn.1_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_10_at_RAB11FIP4_5end | |||
|id=chr17:29718653..29718656,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.95e-52!57;UBERON:0005068!2.95e-52!57;UBERON:0006241!2.95e-52!57;UBERON:0007135!2.95e-52!57;UBERON:0001017!3.37e-52!82;UBERON:0005743!4.81e-52!86;UBERON:0000073!8.97e-49!94;UBERON:0001016!8.97e-49!94;UBERON:0000955!1.00e-46!69;UBERON:0006238!1.00e-46!69;UBERON:0003075!4.34e-44!86;UBERON:0007284!4.34e-44!86;UBERON:0002616!2.38e-43!59;UBERON:0001893!6.75e-42!34;UBERON:0002020!9.59e-42!34;UBERON:0003528!9.59e-42!34;UBERON:0002346!9.98e-42!90;UBERON:0001869!1.11e-40!32;UBERON:0002619!1.17e-39!22;UBERON:0002791!3.93e-39!33;UBERON:0002780!2.58e-37!41;UBERON:0001890!2.58e-37!41;UBERON:0006240!2.58e-37!41;UBERON:0003080!2.66e-36!42;UBERON:0000956!1.48e-34!25;UBERON:0000203!1.48e-34!25;UBERON:0001950!7.66e-34!20;UBERON:0003056!3.84e-30!61;UBERON:0000033!1.30e-27!123;UBERON:0000153!6.51e-26!129;UBERON:0007811!6.51e-26!129;UBERON:0004121!6.96e-26!169;UBERON:0007023!1.82e-25!115;UBERON:0000924!4.70e-25!173;UBERON:0006601!4.70e-25!173;UBERON:0000200!3.99e-20!6;UBERON:0003076!1.09e-16!15;UBERON:0003057!1.09e-16!15;UBERON:0001871!2.17e-14!7;UBERON:0004733!1.19e-12!12;UBERON:0002028!1.19e-12!12;UBERON:0007277!1.19e-12!12;UBERON:0000025!1.66e-12!194;UBERON:0004732!1.35e-11!13;UBERON:0000349!4.80e-11!5;UBERON:0000988!1.25e-10!3;UBERON:0002771!2.73e-10!3;UBERON:0002298!4.02e-10!8;UBERON:0000064!6.42e-10!219;UBERON:0002680!4.05e-09!9;UBERON:0001895!4.05e-09!9;UBERON:0010092!4.05e-09!9;UBERON:0000483!5.50e-09!309;UBERON:0002308!7.83e-09!9;UBERON:0000125!7.83e-09!9;UBERON:0000119!8.29e-09!312;UBERON:0004111!1.84e-08!241;UBERON:0001870!2.94e-08!2;UBERON:0001954!6.07e-08!2;UBERON:0003022!6.07e-08!2;UBERON:0002421!6.07e-08!2;UBERON:0002600!6.07e-08!2;UBERON:0000475!7.16e-08!365;UBERON:0002148!1.27e-07!2;UBERON:0009662!1.27e-07!2;UBERON:0002021!3.49e-07!5;UBERON:0001872!5.12e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.40e-47;20!UBERON:0002619;2.59e-43;22!UBERON:0000956;2.01e-38;25!UBERON:0000203;2.01e-38;25!UBERON:0002021;1.69e-32;5!UBERON:0002791;4.38e-31;32!UBERON:0001869;5.18e-29;32!UBERON:0003528;1.66e-25;34!UBERON:0002020;1.66e-25;34!UBERON:0001893;1.57e-22;34!UBERON:0002702;4.66e-21;2!UBERON:0002780;1.02e-20;41!UBERON:0001890;1.02e-20;41!UBERON:0001870;1.60e-14;3!UBERON:0000073;5.94e-12;53!UBERON:0002616;5.94e-12;53!UBERON:0001872;2.97e-09;5!UBERON:0000200;6.33e-08;6!UBERON:0001871;5.70e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,2.41e-47,20;UBERON:0002619,2.60e-43,22;UBERON:0000956,2.01e-38,25;UBERON:0000203,2.01e-38,25;UBERON:0002021,1.99e-32,5;UBERON:0002791,1.83e-30,32;UBERON:0001869,1.83e-30,32;UBERON:0003528,9.00e-29,34;UBERON:0002020,9.00e-29,34;UBERON:0001893,9.00e-29,34;UBERON:0002780,4.07e-24,41;UBERON:0001890,4.07e-24,41;UBERON:0003080,4.07e-24,41;UBERON:0006240,4.07e-24,41;UBERON:0002702,3.11e-21,2;UBERON:0000073,6.22e-19,53;UBERON:0002616,6.22e-19,53;UBERON:0001049,5.63e-18,56;UBERON:0005068,5.63e-18,56;UBERON:0006241,5.63e-18,56;UBERON:0007135,5.63e-18,56;UBERON:0003056,1.38e-16,61;UBERON:0000955,9.02e-15,68;UBERON:0006238,9.02e-15,68;UBERON:0001870,1.22e-14,3;UBERON:0001017,1.45e-12,81;UBERON:0003075,1.45e-12,82;UBERON:0007284,1.45e-12,82;UBERON:0002346,5.13e-12,86;UBERON:0001016,2.13e-11,89;UBERON:0010371,4.61e-10,104;UBERON:0001872,3.22e-09,5;UBERON:0010314,4.60e-08,132;UBERON:0000200,5.54e-08,6;UBERON:0001871,5.70e-07,6 | |||
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|short_description=p10@RAB11FIP4 | |||
}} |
Revision as of 12:56, 11 September 2013
Short description: | p10@RAB11FIP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_RAB11FIP4_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 11bp_to_ENST00000325874, ENST00000394744, NM_032932, uc002hgn.1_5end |
EntrezGene: | RAB11FIP4 |
HGNC: | 30267 |
UniProt: | Q86YS3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 2.41e-47 | 20 |
regional part of cerebral cortex | 2.60e-43 | 22 |
cerebral cortex | 2.01e-38 | 25 |
pallium | 2.01e-38 | 25 |
occipital lobe | 1.99e-32 | 5 |
regional part of telencephalon | 1.83e-30 | 32 |
cerebral hemisphere | 1.83e-30 | 32 |
brain grey matter | 9.00e-29 | 34 |
gray matter | 9.00e-29 | 34 |
telencephalon | 9.00e-29 | 34 |
regional part of forebrain | 4.07e-24 | 41 |
forebrain | 4.07e-24 | 41 |
anterior neural tube | 4.07e-24 | 41 |
future forebrain | 4.07e-24 | 41 |
middle frontal gyrus | 3.11e-21 | 2 |
regional part of nervous system | 6.22e-19 | 53 |
regional part of brain | 6.22e-19 | 53 |
neural tube | 5.63e-18 | 56 |
neural rod | 5.63e-18 | 56 |
future spinal cord | 5.63e-18 | 56 |
neural keel | 5.63e-18 | 56 |
pre-chordal neural plate | 1.38e-16 | 61 |
brain | 9.02e-15 | 68 |
future brain | 9.02e-15 | 68 |
frontal cortex | 1.22e-14 | 3 |
central nervous system | 1.45e-12 | 81 |
neural plate | 1.45e-12 | 82 |
presumptive neural plate | 1.45e-12 | 82 |
neurectoderm | 5.13e-12 | 86 |
nervous system | 2.13e-11 | 89 |
ecto-epithelium | 4.61e-10 | 104 |
parietal lobe | 3.22e-09 | 5 |
structure with developmental contribution from neural crest | 4.60e-08 | 132 |
gyrus | 5.54e-08 | 6 |
temporal lobe | 5.70e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.