FFCP PHASE1:Hg19::chr16:57653625..57653669,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9289|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4512|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc002elz.1,uc002ema.1_5end|coexpression_cluster_id=C2379|description=CAGE_peak_3_at_GPR56_5end|id=chr16:57653625..57653669,+|ontology_enrichment_celltype=CL:0000066!8.85e-42!254;CL:0002076!6.33e-26!43;CL:0000223!7.09e-23!59;CL:0002251!5.80e-14!21;CL:0002368!4.82e-10!13;CL:0002159!2.91e-08!13|ontology_enrichment_celltype_v019=CL:0002076;4.39e-22;42!CL:0002251;5.82e-16;20!CL:0002368;1.55e-11;13!CL:1000507;2.40e-09;10!CL:1000494;2.40e-09;10!CL:0002159;1.31e-08;14!CL:1000497;1.17e-07;17!CL:0002518;1.17e-07;17!CL:1000449;1.25e-07;15!CL:0002202;1.86e-07;9!CL:0002632;1.86e-07;9|ontology_enrichment_celltype_v019_2=CL:0000066,6.96e-38,253;CL:0002076,8.52e-29,42;CL:0000223,5.10e-25,58;CL:0002251,6.00e-16,20;CL:0002368,1.61e-11,13;CL:1000507,2.41e-09,10;CL:1000494,2.41e-09,10;CL:0002159,1.28e-08,14;CL:1000497,1.18e-07,17;CL:0002518,1.18e-07,17;CL:1000449,1.24e-07,15;CL:0002202,1.94e-07,9;CL:0002632,1.94e-07,9|ontology_enrichment_development_v019=CL:0000223;6.22e-13;58!UBERON:0006595;1.15e-07;86|ontology_enrichment_disease=DOID:305!3.10e-28!106;DOID:0050687!7.55e-19!143;DOID:299!1.98e-11!25;DOID:1749!6.29e-11!14;DOID:162!6.17e-07!235|ontology_enrichment_disease_v019=DOID:1749;1.54e-12;14!DOID:299;2.09e-09;25!DOID:305;8.26e-09;106|ontology_enrichment_disease_v019_2=DOID:305,2.04e-23,106;DOID:0050687,1.92e-16,143;DOID:1749,1.51e-12,14;DOID:299,2.14e-09,25|ontology_enrichment_uberon=UBERON:0004119!3.77e-34!169;UBERON:0000925!3.77e-34!169;UBERON:0006595!3.77e-34!169;UBERON:0001007!4.69e-27!155;UBERON:0001555!4.69e-27!155;UBERON:0007026!4.69e-27!155;UBERON:0004921!2.80e-23!129;UBERON:0004185!2.80e-23!129;UBERON:0000077!1.03e-21!130;UBERON:0001004!7.96e-20!72;UBERON:0000466!6.05e-16!126;UBERON:0000464!1.80e-15!104;UBERON:0001041!2.67e-15!98;UBERON:0005911!1.85e-14!82;UBERON:0000065!1.87e-14!53;UBERON:0000062!2.40e-12!511;UBERON:0001008!8.36e-12!45;UBERON:0005177!1.65e-11!107;UBERON:0006554!2.42e-11!44;UBERON:0008947!4.39e-11!38;UBERON:0003258!4.39e-11!38;UBERON:0000072!1.02e-10!46;UBERON:0003104!1.83e-10!238;UBERON:0009142!1.83e-10!238;UBERON:0000161!4.51e-10!35;UBERON:0009569!9.44e-10!113;UBERON:0005153!1.40e-09!37;UBERON:0000064!3.19e-09!219;UBERON:0000344!3.61e-09!12;UBERON:0000058!5.54e-09!26;UBERON:0005178!6.30e-09!34;UBERON:0002224!6.30e-09!34;UBERON:0000166!9.98e-09!21;UBERON:0000481!1.10e-08!347;UBERON:0000922!1.29e-08!612;UBERON:0005181!1.82e-08!35;UBERON:0000468!2.82e-08!659;UBERON:0004175!3.20e-08!25;UBERON:0002553!4.74e-08!70;UBERON:0005156!4.80e-08!59;UBERON:0000990!4.80e-08!59;UBERON:0001048!8.76e-08!168;UBERON:0003133!1.76e-07!48;UBERON:0000467!1.87e-07!625;UBERON:0003064!1.88e-07!37;UBERON:0000063!2.03e-07!97;UBERON:0000480!2.29e-07!626;UBERON:0002050!2.52e-07!605;UBERON:0005423!2.52e-07!605;UBERON:0000080!2.56e-07!18;UBERON:0002120!2.56e-07!18;UBERON:0004875!2.56e-07!18;UBERON:0005721!2.56e-07!18;UBERON:0005754!2.56e-07!18;UBERON:0007297!2.56e-07!18;UBERON:0002113!3.07e-07!27;UBERON:0003918!3.07e-07!27;UBERON:0005095!3.07e-07!27;UBERON:0007687!3.07e-07!27;UBERON:0004876!3.33e-07!20;UBERON:0002048!3.72e-07!22;UBERON:0000117!3.72e-07!22;UBERON:0000171!3.72e-07!22;UBERON:0000170!3.72e-07!22;UBERON:0005597!3.72e-07!22;UBERON:0000118!3.72e-07!22;UBERON:0004807!4.19e-07!28;UBERON:0000923!4.43e-07!604;UBERON:0005291!4.43e-07!604;UBERON:0006598!4.43e-07!604;UBERON:0002532!4.43e-07!604;UBERON:0000489!5.60e-07!32;UBERON:0000165!6.18e-07!28;UBERON:0000930!6.18e-07!28|ontology_enrichment_uberon_v019=UBERON:0004921;6.64e-13;33!UBERON:0006554;9.69e-13;30!UBERON:0001008;9.69e-13;30!UBERON:0005911;2.99e-10;36!UBERON:0004211;2.40e-09;10!UBERON:0009773;2.40e-09;10!UBERON:0001231;2.40e-09;10!UBERON:0004810;2.40e-09;10!UBERON:0001555;3.06e-09;54!UBERON:0000344;3.75e-09;20!UBERON:0004807;4.57e-09;22!UBERON:0000161;5.89e-09;19!UBERON:0000166;5.89e-09;19!UBERON:0005409;1.76e-08;22!UBERON:0002113;8.96e-08;24!UBERON:0011143;8.96e-08;24!UBERON:0006555;1.25e-07;15!UBERON:0004819;1.25e-07;15!UBERON:0001285;1.25e-07;15!UBERON:0007684;1.25e-07;15!UBERON:0000165;1.26e-07;28!UBERON:0000489;1.35e-07;29!UBERON:0000160;2.22e-07;17!UBERON:0001041;2.38e-07;14!UBERON:0000365;3.04e-07;5!UBERON:0003350;3.63e-07;8!UBERON:0000974;4.83e-07;6!UBERON:0005178;7.60e-07;34!UBERON:0002224;7.60e-07;34!UBERON:0004175;7.97e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.05e-28,160;UBERON:0000925,4.05e-28,160;UBERON:0006595,4.05e-28,160;UBERON:0001007,3.99e-21,145;UBERON:0001555,3.99e-21,145;UBERON:0007026,3.99e-21,145;UBERON:0004921,5.81e-18,118;UBERON:0001008,4.80e-17,48;UBERON:0006554,1.77e-16,47;UBERON:0001004,4.27e-14,74;UBERON:0005911,1.19e-12,82;UBERON:0005177,3.34e-12,101;UBERON:0000161,1.31e-11,36;UBERON:0001041,6.25e-10,87;UBERON:0005156,1.35e-09,59;UBERON:0000990,1.35e-09,59;UBERON:0000166,1.41e-09,22;UBERON:0009569,2.32e-09,112;UBERON:0004810,2.41e-09,10;UBERON:0002113,3.07e-09,26;UBERON:0003918,3.07e-09,26;UBERON:0011143,3.07e-09,26;UBERON:0005095,3.07e-09,26;UBERON:0007687,3.07e-09,26;UBERON:0000344,3.66e-09,20;UBERON:0000489,5.69e-09,31;UBERON:0004175,8.33e-09,25;UBERON:0003133,1.09e-08,48;UBERON:0000065,1.38e-08,54;UBERON:0006555,1.95e-08,16;UBERON:0004819,1.95e-08,16;UBERON:0005153,2.20e-08,37;UBERON:0004807,8.87e-08,28;UBERON:0004211,1.24e-07,15;UBERON:0009773,1.24e-07,15;UBERON:0001231,1.24e-07,15;UBERON:0001285,1.24e-07,15;UBERON:0007684,1.24e-07,15;UBERON:0004208,1.24e-07,15;UBERON:0005178,1.36e-07,34;UBERON:0002224,1.36e-07,34;UBERON:0000160,2.15e-07,17;UBERON:0003100,2.46e-07,41;UBERON:0000365,3.10e-07,5;UBERON:0005181,3.20e-07,35;UBERON:0000165,3.27e-07,29;UBERON:0000930,3.27e-07,29;UBERON:0003350,3.62e-07,8;UBERON:0005157,4.97e-07,47;UBERON:0005409,5.23e-07,25;UBERON:0000072,5.28e-07,47;UBERON:0001046,8.20e-07,19|phase1_expression=0,0,0,0,0,0,0,0,0,5.16041266653169,9.76921635161399,8.51921351307672,11.605747042052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.6301608161418,25.6025030961513,24.0340106608412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,20.3672462398943,50.2727497843708,28.5504020944011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,55.8200386742444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,49.2815175566407,36.5479801591718,44.4547122852956,0.487894824518382,0,0.232387885739037,1.7622379352613,0.756962552626885,1.45990943630332,0,0,0,0,0,0.946454400318751,0.337169380156203,0.723033089650446,0.55146986366197,1.08939722046203,0,0.269662616320329,0.392442930250692,0.38474715694639,0,0,0.8231480226628,0,0,0,0,0,39.6022772108826,0,52.1313855690971,22.4803506515239,17.3915122272121,27.4987682120833,0,0,0,0,0.117408694235822,0,0,0,21.3355187449004,4.29243081047436,0,0,0,22.4961201568265,28.724943922005,31.6158466850522,25.5241789703118,17.1474023723238,29.5204662957213,0,0,0.207328115540772,0.288239906833923,0.37872730027914,0.063497894292169,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.03127571446259,3.32870879020994,9.07170879989041,0,0,0,0,0,0,0,0,0,0,0,0,45.2014341472667,54.5377599224935,23.2044092118459,0,0,0,37.4495678713152,21.4102637150273,21.1774437677751,13.1525302187935,22.060290438611,0,0,0,1.54227252690289,2.70946437543853,15.5523829895005,15.0377001096573,20.7769002232181,17.4622308683299,0,0,0,0.328014645699706,0,3.91555844261345,0,0,28.1390113618124,35.1032532859721,0,0,0,0,0,0,0,0,0,37.850245617664,69.1884242514382,21.183710274101,39.9573234379422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,28.0968569158495,24.8011841948241,28.3116560639439,3.10674542563371,64.1453005280133,47.1720131869352,69.6185341052581,37.2151908335274,0,0,0,0,0,0,0,0,0,0,11.2718499351275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.05279459102193,0,0,0,0,3.58116727106535,4.15750553165694,2.15012491469462,0,0,0,0,0,2.78947183551498,4.42054264849836,10.5811754098796,0,0,0,5.12249601539763,56.7497123721681,0,4.34030984802508,0,0,0,0,0,21.3550764089891,18.7164399991859,1.44999915086959,33.9104475890789,50.8507300585533,18.2018514961311,3.10269035917318,0,0,0,0,0,0,0,0,2.1787692703798,38.6203771651731,6.00212016329617,0,10.3753756974627,10.8606749735824,8.47449500991663,1.27600463892768,16.3959692189334,1.5991043280559,0,0,0,0,0,0,0,0,0.210998064528027,27.0966461544185,39.2961538586355,2.59666367690509,15.9241908972561,7.07660516026713,14.0536933334734,0,0,0,0,0,0,0,44.2202038786523,0,23.6750641709634,12.0990716048664,0,0,0,0,0,0,0,0,19.0688395839961,0,28.6373568252966,32.7294607364021,9.92474955016589,24.6364602221262,0,2.80593360738347,4.23918039099876,2.79192553980911,10.9597588631914,0,2.48578814858586,0,0,0,17.4040730633975,3.84762337207362,31.1641372319455,0.19980960958213,27.233088842126,0,1.37275998289572,0,0,39.3609037810048,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,5.19165401297377,0,0,0,0,53.5881367826288,3.70280956843951,3.29663433524666,3.30277364885506,0.196854963029498,0,0,0,0.160753148465019,0.412618309791701,0,0.674921674654501,3.0952078182318,0,67.4223722074525,100.871305342974,40.1277599232736,0,0,16.8885373641112,0,0,10.6792785814995,0,0,0,0,0,0,0,0.732761168390412,0,0,0,0.513260513652988,47.222606495217,0.747511887973863,0.78602152549833,0.414239055347196,0,0,0,127.668251554036,0,0,0,0,110.094921471414,0,0,0,0,0,0,0,19.9968652739371,0,0,0,0,5.36207805860053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926404341482917,0,0,0,0,3.33113974164331,0.690860683462397,0,0,0.194860308839388,0,0.163565394255844,0,0,22.3990850760145,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9289 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4512 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc002elz.1,uc002ema.1_5end | |||
|coexpression_cluster_id=C2379 | |||
|description=CAGE_peak_3_at_GPR56_5end | |||
|id=chr16:57653625..57653669,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.85e-42!254;CL:0002076!6.33e-26!43;CL:0000223!7.09e-23!59;CL:0002251!5.80e-14!21;CL:0002368!4.82e-10!13;CL:0002159!2.91e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.39e-22;42!CL:0002251;5.82e-16;20!CL:0002368;1.55e-11;13!CL:1000507;2.40e-09;10!CL:1000494;2.40e-09;10!CL:0002159;1.31e-08;14!CL:1000497;1.17e-07;17!CL:0002518;1.17e-07;17!CL:1000449;1.25e-07;15!CL:0002202;1.86e-07;9!CL:0002632;1.86e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.96e-38,253;CL:0002076,8.52e-29,42;CL:0000223,5.10e-25,58;CL:0002251,6.00e-16,20;CL:0002368,1.61e-11,13;CL:1000507,2.41e-09,10;CL:1000494,2.41e-09,10;CL:0002159,1.28e-08,14;CL:1000497,1.18e-07,17;CL:0002518,1.18e-07,17;CL:1000449,1.24e-07,15;CL:0002202,1.94e-07,9;CL:0002632,1.94e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;6.22e-13;58!UBERON:0006595;1.15e-07;86 | |||
|ontology_enrichment_disease=DOID:305!3.10e-28!106;DOID:0050687!7.55e-19!143;DOID:299!1.98e-11!25;DOID:1749!6.29e-11!14;DOID:162!6.17e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.54e-12;14!DOID:299;2.09e-09;25!DOID:305;8.26e-09;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.04e-23,106;DOID:0050687,1.92e-16,143;DOID:1749,1.51e-12,14;DOID:299,2.14e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.77e-34!169;UBERON:0000925!3.77e-34!169;UBERON:0006595!3.77e-34!169;UBERON:0001007!4.69e-27!155;UBERON:0001555!4.69e-27!155;UBERON:0007026!4.69e-27!155;UBERON:0004921!2.80e-23!129;UBERON:0004185!2.80e-23!129;UBERON:0000077!1.03e-21!130;UBERON:0001004!7.96e-20!72;UBERON:0000466!6.05e-16!126;UBERON:0000464!1.80e-15!104;UBERON:0001041!2.67e-15!98;UBERON:0005911!1.85e-14!82;UBERON:0000065!1.87e-14!53;UBERON:0000062!2.40e-12!511;UBERON:0001008!8.36e-12!45;UBERON:0005177!1.65e-11!107;UBERON:0006554!2.42e-11!44;UBERON:0008947!4.39e-11!38;UBERON:0003258!4.39e-11!38;UBERON:0000072!1.02e-10!46;UBERON:0003104!1.83e-10!238;UBERON:0009142!1.83e-10!238;UBERON:0000161!4.51e-10!35;UBERON:0009569!9.44e-10!113;UBERON:0005153!1.40e-09!37;UBERON:0000064!3.19e-09!219;UBERON:0000344!3.61e-09!12;UBERON:0000058!5.54e-09!26;UBERON:0005178!6.30e-09!34;UBERON:0002224!6.30e-09!34;UBERON:0000166!9.98e-09!21;UBERON:0000481!1.10e-08!347;UBERON:0000922!1.29e-08!612;UBERON:0005181!1.82e-08!35;UBERON:0000468!2.82e-08!659;UBERON:0004175!3.20e-08!25;UBERON:0002553!4.74e-08!70;UBERON:0005156!4.80e-08!59;UBERON:0000990!4.80e-08!59;UBERON:0001048!8.76e-08!168;UBERON:0003133!1.76e-07!48;UBERON:0000467!1.87e-07!625;UBERON:0003064!1.88e-07!37;UBERON:0000063!2.03e-07!97;UBERON:0000480!2.29e-07!626;UBERON:0002050!2.52e-07!605;UBERON:0005423!2.52e-07!605;UBERON:0000080!2.56e-07!18;UBERON:0002120!2.56e-07!18;UBERON:0004875!2.56e-07!18;UBERON:0005721!2.56e-07!18;UBERON:0005754!2.56e-07!18;UBERON:0007297!2.56e-07!18;UBERON:0002113!3.07e-07!27;UBERON:0003918!3.07e-07!27;UBERON:0005095!3.07e-07!27;UBERON:0007687!3.07e-07!27;UBERON:0004876!3.33e-07!20;UBERON:0002048!3.72e-07!22;UBERON:0000117!3.72e-07!22;UBERON:0000171!3.72e-07!22;UBERON:0000170!3.72e-07!22;UBERON:0005597!3.72e-07!22;UBERON:0000118!3.72e-07!22;UBERON:0004807!4.19e-07!28;UBERON:0000923!4.43e-07!604;UBERON:0005291!4.43e-07!604;UBERON:0006598!4.43e-07!604;UBERON:0002532!4.43e-07!604;UBERON:0000489!5.60e-07!32;UBERON:0000165!6.18e-07!28;UBERON:0000930!6.18e-07!28 | |||
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| |||
|short_description=p3@GPR56 | |||
}} |
Revision as of 10:54, 11 September 2013
Short description: | p3@GPR56 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_GPR56_5end |
Coexpression cluster: | C2379_smallcell_maxillary_malignant_kidney_pancreatic_signet_bronchioalveolar |
Association with transcript: | 0bp_to_uc002elz.1, uc002ema.1_5end |
EntrezGene: | GPR56 |
HGNC: | 4512 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.96e-38 | 253 |
endo-epithelial cell | 8.52e-29 | 42 |
endodermal cell | 5.10e-25 | 58 |
epithelial cell of alimentary canal | 6.00e-16 | 20 |
respiratory epithelial cell | 1.61e-11 | 13 |
kidney tubule cell | 2.41e-09 | 10 |
nephron tubule epithelial cell | 2.41e-09 | 10 |
general ecto-epithelial cell | 1.28e-08 | 14 |
kidney cell | 1.18e-07 | 17 |
kidney epithelial cell | 1.18e-07 | 17 |
epithelial cell of nephron | 1.24e-07 | 15 |
epithelial cell of tracheobronchial tree | 1.94e-07 | 9 |
epithelial cell of lower respiratory tract | 1.94e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.04e-23 | 106 |
cell type cancer | 1.92e-16 | 143 |
squamous cell carcinoma | 1.51e-12 | 14 |
adenocarcinoma | 2.14e-09 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.