FFCP PHASE1:Hg19::chr16:27325202..27325307,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3566|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6015|TSSclassifier=S|UniProt=B4E076,F8W7M1,P24394|association_with_transcript=0bp_to_ENST00000380922,ENST00000380925,ENST00000395762,ENST00000449195,ENST00000543915,NM_000418,NM_001008699,uc002dom.2,uc002don.2,uc002doo.2,uc002dop.3,uc010bxy.2_5end|coexpression_cluster_id=C498|description=CAGE_peak_1_at_IL4R_5end|id=chr16:27325202..27325307,+|ontology_enrichment_celltype=CL:0000738!3.27e-40!140;CL:0002031!1.13e-31!124;CL:0002087!1.96e-31!119;CL:0000988!1.58e-27!182;CL:0000037!2.53e-26!172;CL:0000566!2.53e-26!172;CL:0002032!9.89e-26!165;CL:0000837!9.89e-26!165;CL:0000766!8.28e-25!76;CL:0000557!3.09e-20!71;CL:0002057!3.41e-19!42;CL:0002009!5.66e-19!65;CL:0000839!2.27e-18!70;CL:0002194!3.24e-18!63;CL:0000576!3.24e-18!63;CL:0000040!3.24e-18!63;CL:0000559!3.24e-18!63;CL:0000860!1.38e-17!45;CL:0000763!6.36e-14!112;CL:0000049!6.36e-14!112;CL:0000838!2.73e-12!52;CL:0000542!8.56e-12!53;CL:0000051!8.56e-12!53;CL:0000236!7.13e-08!14;CL:0002371!1.27e-07!591;CL:0000945!3.86e-07!24;CL:0000826!3.86e-07!24|ontology_enrichment_celltype_v019=CL:0000860;5.55e-18;33!CL:0002057;5.55e-18;33!CL:0000473;8.44e-16;39!CL:0000234;8.44e-16;39!CL:0000576;6.67e-12;48!CL:0000766;2.95e-11;69!CL:0002087;8.63e-10;104!CL:0000738;1.31e-09;136!CL:0000236;3.50e-08;13!CL:0000542;5.19e-08;53!CL:0000945;4.47e-07;24|ontology_enrichment_celltype_v019_2=CL:0000738,4.76e-41,136;CL:0002031,2.18e-32,120;CL:0002087,3.15e-32,115;CL:0000988,1.43e-27,177;CL:0000037,1.27e-26,168;CL:0002032,4.82e-26,161;CL:0000837,4.82e-26,161;CL:0000766,7.15e-26,72;CL:0000557,3.73e-21,67;CL:0000473,4.70e-20,48;CL:0000234,4.70e-20,48;CL:0002009,6.38e-20,61;CL:0000860,3.39e-19,42;CL:0002057,3.39e-19,42;CL:0000839,3.63e-19,66;CL:0002194,3.73e-19,59;CL:0000576,3.73e-19,59;CL:0000040,3.73e-19,59;CL:0000559,3.73e-19,59;CL:0000763,3.49e-14,108;CL:0000049,3.49e-14,108;CL:0000838,2.72e-12,52;CL:0000542,8.54e-12,53;CL:0000051,8.54e-12,53;CL:0000236,7.12e-08,14;CL:0000945,3.86e-07,24;CL:0000826,3.86e-07,24|ontology_enrichment_development_v019=CL:0002057;1.98e-14;42!CL:0000051;5.19e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!3.53e-24!112;UBERON:0003081!7.51e-23!216;UBERON:0002390!6.20e-22!102;UBERON:0003061!6.20e-22!102;UBERON:0002405!5.47e-15!115;UBERON:0002371!8.78e-15!80;UBERON:0001474!5.50e-12!86;UBERON:0001009!5.50e-10!113;UBERON:0004535!6.19e-10!110;UBERON:0004765!4.09e-09!101;UBERON:0001434!4.09e-09!101;UBERON:0000178!6.67e-08!15;UBERON:0000179!6.67e-08!15;UBERON:0000463!6.67e-08!15|ontology_enrichment_uberon_v019=UBERON:0000178;6.51e-08;15!UBERON:0000179;6.51e-08;15!UBERON:0000463;6.51e-08;15|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.09e-25,108;UBERON:0002390,1.40e-22,98;UBERON:0003061,1.40e-22,98;UBERON:0003081,2.40e-22,203;UBERON:0002405,1.79e-18,93;UBERON:0002371,2.46e-15,76;UBERON:0001474,2.19e-12,82;UBERON:0004765,2.01e-11,90;UBERON:0001009,9.01e-10,112;UBERON:0004535,1.02e-09,109;UBERON:0000926,1.25e-09,315;UBERON:0004120,1.25e-09,315;UBERON:0006603,1.25e-09,315;UBERON:0001434,1.22e-08,100;UBERON:0000178,6.66e-08,15;UBERON:0000179,6.66e-08,15;UBERON:0000463,6.66e-08,15|phase1_expression=9.99231085988061,5.35251309727458,9.72585388262201,7.00513088471913,3.12872766099101,18.3191090061077,5.06599756336621,4.42203911398782,1.56711376919903,14.006834380586,32.7966548947041,10.9220686065086,16.6173196283926,5.69325223616215,4.63956326019082,15.4634783683908,19.2862248967673,18.9880623500717,18.0535135552488,8.74159512345194,9.18003110599138,7.52291331547411,1.71741592278634,3.55873505189499,4.14290710662849,24.0702228106046,20.9356503097362,17.9460581395189,46.0236203913218,44.5242101792767,46.909285364771,57.0041159176935,78.0123329635668,45.8494972606817,68.2486037112457,24.1687695228617,2.93600439334847,103.043145986929,122.733201851727,94.8337505028272,24.1828712179118,16.518576966968,27.3030101692238,51.4709765279659,52.5247561727445,60.4034312357662,81.5825919538953,91.6904390288671,89.1954348177898,92.3492579354103,115.016157231566,100.977912162426,100.320993094356,122.642089880927,117.821043337077,81.3206906824052,79.9615019669488,63.1472991290688,139.574254921132,115.85537877447,143.850853304784,106.871821260496,105.915202197087,129.998548912472,160.775918200236,179.2937310024,169.407651726796,65.3246529667532,75.093540252509,74.495773733855,98.0747194266057,117.112288244046,107.28074934246,16.2666570460195,21.0478256965393,18.2403021592287,33.586260712802,30.1855554611428,35.0381778999635,7.41033133727246,8.15558376516269,9.31587184199633,258.714479358144,260.508117572037,257.957683620431,186.90783748413,184.582550023602,264.960874819017,248.552872167108,228.972901088487,266.391669543222,158.554041130153,159.40793612822,25.1125524300149,95.8469642698427,2.89722493252585,55.2754454019871,66.4188189046088,62.0916526978518,36.7810289859492,32.9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88,14.3936995892353,15.5262956876259,7.4647117411354,10.3678268677618,19.8263123488459,19.6837467786356,9.90093551638868,6.50993173127459,18.7304118978636,15.4671202141183,14.8490803161118,19.1086026575336,11.6008051752315,5.49433128292469,6.06149079778654,21.4514326988707,10.5940906724017,6.86213092399762,17.7476118536344,10.2017666480523,5.78806185809585,9.0552580667393,7.1635536432595,12.9696607807608,12.2799067764076,9.54121388107758,9.64570191354574,6.75769762612291,3.58738126023125,6.56317649289277,6.07719912354764,8.57202304140731,25.7215607667993,45.1740457065435,54.4672762871961,7.53502652346749,5.40700399258183,8.45248493434508,38.5975674000015,5.76135340348361,2.75543967457305,1.13503190713367,9.38940346284388,21.1218056656361,30.4817857416157,1.15104934173287,2.372145850727,1.88719130227076,4.91443371864063,0,0,6.07285244869111,0,5.40607396110812,4.02194899506392,0,5.29013915536026,28.7870748712008,3.40414893011235,1.41696576325585,10.535834697772,2.2562800066483,0.504143392443436,3.73449163306777,1.77623210195036,12.8492478233239,8.93144238359333,2.12345502025933,16.5085738669511,13.1699259411386,10.6786986730807,16.5686382254424,2.3869946653953,9.70213235705419,6.85797233591968,7.03362610109783,0.785720083444267,5.2407013603231,26.0226711742,3.44441681553813,3.12431239445539,11.1610870110639,2.66346402814409,0.546974809018219,6.57909320228619,20.3446583139611,0,30.7907450611425,3.74991285114801,4.03540466662589,4.24875922965642,4.09791944432336,18.6274977341542,12.7909726186915,6.85952037749674,6.18524570089169,2.56513816895111,10.5192518386732,6.00649570217173,17.7394389842162,4.39923651764805,17.6571462887687,7.30526976407596,14.6830762028663,2.8665101273223,12.7943014076215,3.16027223465453,0,19.8198430424941,12.0256704709538,18.0278062821842,10.7552640569188,7.60385627995501,4.73250094702305,7.33658404529505,11.5038096424863,9.73790215439137,7.3314197934096,12.0980490409085,8.5998504507969,11.6329649069704,0.883352102537187,13.5328896730319,3.23714418593947,7.59704770736228,6.95888658802919,11.1713528403602,0,3.97901550322736,0.594600453887843,0,0.659643100472575,2.11347980993343,20.5283260567133,16.3919670377968,0,22.5536456013593,0.235676547101626,13.9379011651611,16.9316448186439,5.0718687310008,11.5550437987715,32.5184356210293,41.3819640790365,15.8906437920637,28.0329683610882,32.113433326128,2.56772373405338,12.4157186001908,12.3856906519226,11.8971854015705,0.315543124386369,2.7876510978275,1.30905207102113,15.3417783749466,7.06790534516827,4.15958065768276,6.05677186973305,7.44381906526966,3.16870158694717,7.47521155967478,18.2560005238147,10.955913615888,9.0057001544148,16.045282514712,9.54811597549817,4.82335434281121,5.80418607621146,9.82613460688005,14.4999107692667,5.47548192366603,10.786347942613,15.1462302881893,7.28857106773987,8.08318910132694,4.85081253499726,16.764189588066,8.21359922604674,54.218402676743,33.6377143291652,10.6451314094724,9.93119877053889,4.05563914335319,5.7921684686082,12.395877890709,11.7320471201727,13.5688003042982,8.13792356631477,17.9754329030088,32.4050807681552,13.784445169039|short_description=p1@IL4R}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3566 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6015 | |||
|TSSclassifier=S | |||
|UniProt=B4E076,F8W7M1,P24394 | |||
|association_with_transcript=0bp_to_ENST00000380922,ENST00000380925,ENST00000395762,ENST00000449195,ENST00000543915,NM_000418,NM_001008699,uc002dom.2,uc002don.2,uc002doo.2,uc002dop.3,uc010bxy.2_5end | |||
|coexpression_cluster_id=C498 | |||
|description=CAGE_peak_1_at_IL4R_5end | |||
|id=chr16:27325202..27325307,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.27e-40!140;CL:0002031!1.13e-31!124;CL:0002087!1.96e-31!119;CL:0000988!1.58e-27!182;CL:0000037!2.53e-26!172;CL:0000566!2.53e-26!172;CL:0002032!9.89e-26!165;CL:0000837!9.89e-26!165;CL:0000766!8.28e-25!76;CL:0000557!3.09e-20!71;CL:0002057!3.41e-19!42;CL:0002009!5.66e-19!65;CL:0000839!2.27e-18!70;CL:0002194!3.24e-18!63;CL:0000576!3.24e-18!63;CL:0000040!3.24e-18!63;CL:0000559!3.24e-18!63;CL:0000860!1.38e-17!45;CL:0000763!6.36e-14!112;CL:0000049!6.36e-14!112;CL:0000838!2.73e-12!52;CL:0000542!8.56e-12!53;CL:0000051!8.56e-12!53;CL:0000236!7.13e-08!14;CL:0002371!1.27e-07!591;CL:0000945!3.86e-07!24;CL:0000826!3.86e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.55e-18;33!CL:0002057;5.55e-18;33!CL:0000473;8.44e-16;39!CL:0000234;8.44e-16;39!CL:0000576;6.67e-12;48!CL:0000766;2.95e-11;69!CL:0002087;8.63e-10;104!CL:0000738;1.31e-09;136!CL:0000236;3.50e-08;13!CL:0000542;5.19e-08;53!CL:0000945;4.47e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.76e-41,136;CL:0002031,2.18e-32,120;CL:0002087,3.15e-32,115;CL:0000988,1.43e-27,177;CL:0000037,1.27e-26,168;CL:0002032,4.82e-26,161;CL:0000837,4.82e-26,161;CL:0000766,7.15e-26,72;CL:0000557,3.73e-21,67;CL:0000473,4.70e-20,48;CL:0000234,4.70e-20,48;CL:0002009,6.38e-20,61;CL:0000860,3.39e-19,42;CL:0002057,3.39e-19,42;CL:0000839,3.63e-19,66;CL:0002194,3.73e-19,59;CL:0000576,3.73e-19,59;CL:0000040,3.73e-19,59;CL:0000559,3.73e-19,59;CL:0000763,3.49e-14,108;CL:0000049,3.49e-14,108;CL:0000838,2.72e-12,52;CL:0000542,8.54e-12,53;CL:0000051,8.54e-12,53;CL:0000236,7.12e-08,14;CL:0000945,3.86e-07,24;CL:0000826,3.86e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;1.98e-14;42!CL:0000051;5.19e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.53e-24!112;UBERON:0003081!7.51e-23!216;UBERON:0002390!6.20e-22!102;UBERON:0003061!6.20e-22!102;UBERON:0002405!5.47e-15!115;UBERON:0002371!8.78e-15!80;UBERON:0001474!5.50e-12!86;UBERON:0001009!5.50e-10!113;UBERON:0004535!6.19e-10!110;UBERON:0004765!4.09e-09!101;UBERON:0001434!4.09e-09!101;UBERON:0000178!6.67e-08!15;UBERON:0000179!6.67e-08!15;UBERON:0000463!6.67e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.51e-08;15!UBERON:0000179;6.51e-08;15!UBERON:0000463;6.51e-08;15 | |||
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| |||
|short_description=p1@IL4R | |||
}} |
Revision as of 09:50, 11 September 2013
Short description: | p1@IL4R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_IL4R_5end |
Coexpression cluster: | C498_Eosinophils_Neutrophils_CD19_Burkitt_diffuse_lymphoma_CD14 |
Association with transcript: | 0bp_to_ENST00000380922, ENST00000380925, ENST00000395762, ENST00000449195, ENST00000543915, NM_000418, NM_001008699, uc002dom.2, uc002don.2, uc002doo.2, uc002dop.3, uc010bxy.2_5end |
EntrezGene: | IL4R |
HGNC: | 6015 |
UniProt: | B4E076F8W7M1P24394 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.76e-41 | 136 |
hematopoietic lineage restricted progenitor cell | 2.18e-32 | 120 |
nongranular leukocyte | 3.15e-32 | 115 |
hematopoietic cell | 1.43e-27 | 177 |
hematopoietic stem cell | 1.27e-26 | 168 |
hematopoietic oligopotent progenitor cell | 4.82e-26 | 161 |
hematopoietic multipotent progenitor cell | 4.82e-26 | 161 |
myeloid leukocyte | 7.15e-26 | 72 |
granulocyte monocyte progenitor cell | 3.73e-21 | 67 |
defensive cell | 4.70e-20 | 48 |
phagocyte | 4.70e-20 | 48 |
macrophage dendritic cell progenitor | 6.38e-20 | 61 |
classical monocyte | 3.39e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.39e-19 | 42 |
myeloid lineage restricted progenitor cell | 3.63e-19 | 66 |
monopoietic cell | 3.73e-19 | 59 |
monocyte | 3.73e-19 | 59 |
monoblast | 3.73e-19 | 59 |
promonocyte | 3.73e-19 | 59 |
myeloid cell | 3.49e-14 | 108 |
common myeloid progenitor | 3.49e-14 | 108 |
lymphoid lineage restricted progenitor cell | 2.72e-12 | 52 |
lymphocyte | 8.54e-12 | 53 |
common lymphoid progenitor | 8.54e-12 | 53 |
B cell | 7.12e-08 | 14 |
lymphocyte of B lineage | 3.86e-07 | 24 |
pro-B cell | 3.86e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 8.09e-25 | 108 |
hematopoietic system | 1.40e-22 | 98 |
blood island | 1.40e-22 | 98 |
lateral plate mesoderm | 2.40e-22 | 203 |
immune system | 1.79e-18 | 93 |
bone marrow | 2.46e-15 | 76 |
bone element | 2.19e-12 | 82 |
skeletal element | 2.01e-11 | 90 |
circulatory system | 9.01e-10 | 112 |
cardiovascular system | 1.02e-09 | 109 |
mesoderm | 1.25e-09 | 315 |
mesoderm-derived structure | 1.25e-09 | 315 |
presumptive mesoderm | 1.25e-09 | 315 |
skeletal system | 1.22e-08 | 100 |
blood | 6.66e-08 | 15 |
haemolymphatic fluid | 6.66e-08 | 15 |
organism substance | 6.66e-08 | 15 |
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