FFCP PHASE1:Hg19::chr16:1993230..1993248,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14133|TSSclassifier=S|UniProt=A8MYR2|association_with_transcript=-42bp_to_ENST00000399753_5end|coexpression_cluster_id=C2362|description=CAGE_peak_2_at_SEPX1_5end|id=chr16:1993230..1993248,-|ontology_enrichment_celltype=CL:0000144!1.71e-16!625;CL:0002371!7.28e-16!591;CL:0000222!2.24e-14!119;CL:0000548!7.09e-12!679;CL:0000004!7.09e-12!679;CL:0000255!7.09e-12!679;CL:0000012!2.41e-11!682;CL:0002321!3.11e-11!248;CL:0000183!6.19e-11!59;CL:0000220!6.56e-11!246;CL:0000055!1.61e-09!180;CL:0000003!3.77e-09!722;CL:0000187!9.06e-09!54;CL:0000680!1.04e-08!57;CL:0000056!1.04e-08!57;CL:0000355!1.04e-08!57;CL:0000393!1.13e-08!60;CL:0000211!1.13e-08!60;CL:0000192!3.93e-08!42;CL:0000514!3.93e-08!42;CL:0002078!5.14e-07!44|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000222,2.68e-14,121;CL:0002321,3.34e-11,250;CL:0000393,2.45e-08,61;CL:0000211,2.45e-08,61;CL:0000187,2.55e-08,55;CL:0000680,2.80e-08,58;CL:0000056,2.80e-08,58;CL:0000355,2.80e-08,58;CL:0000192,1.25e-07,43;CL:0000514,1.25e-07,43;CL:0002078,2.07e-07,45;CL:0000115,6.20e-07,36;CL:0000213,8.88e-07,58;CL:0000215,8.88e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004535!8.46e-10!110;UBERON:0000914!9.82e-10!83;UBERON:0002329!9.82e-10!83;UBERON:0003077!9.82e-10!83;UBERON:0003059!9.82e-10!83;UBERON:0007282!9.82e-10!83;UBERON:0009618!9.82e-10!83;UBERON:0007285!9.82e-10!83;UBERON:0001009!2.29e-09!113;UBERON:0002049!4.37e-09!79;UBERON:0007798!4.37e-09!79;UBERON:0004290!1.07e-08!70;UBERON:0000486!1.63e-08!82;UBERON:0003081!4.03e-08!216;UBERON:0005256!4.90e-08!143;UBERON:0002100!1.89e-07!216;UBERON:0000055!2.71e-07!69;UBERON:0001134!3.26e-07!61;UBERON:0002036!3.26e-07!61;UBERON:0003082!3.26e-07!61;UBERON:0002385!9.46e-07!63;UBERON:0001015!9.46e-07!63;UBERON:0000383!9.46e-07!63|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007503,8.00e-11,78;UBERON:0000926,1.88e-10,315;UBERON:0004120,1.88e-10,315;UBERON:0006603,1.88e-10,315;UBERON:0004535,5.47e-10,109;UBERON:0001009,1.52e-09,112;UBERON:0002049,3.49e-09,78;UBERON:0007798,3.49e-09,78;UBERON:0007524,2.08e-08,73;UBERON:0002329,2.16e-08,71;UBERON:0003059,2.16e-08,71;UBERON:0007282,2.16e-08,71;UBERON:0004290,2.16e-08,71;UBERON:0009618,2.16e-08,71;UBERON:0000486,3.20e-08,83;UBERON:0003077,4.18e-08,72;UBERON:0007285,4.18e-08,72;UBERON:0003081,1.28e-07,203;UBERON:0000055,2.26e-07,68;UBERON:0001134,6.39e-07,62;UBERON:0002036,6.39e-07,62;UBERON:0003082,6.39e-07,62;UBERON:0002100,8.58e-07,199|phase1_expression=4.1786027232228,2.5692062866918,3.80576891059122,4.00293193412522,4.91657203870017,3.48935409640147,2.53299878168311,3.15859936713415,3.65659879479774,4.66894479352867,16.0494268633658,3.71350332621293,4.74780560811216,5.07442047136191,3.64537113300707,6.72325146451775,5.42425075221579,6.57279081348636,4.87932798790507,9.72656358806625,10.2000345622127,5.01527554364941,6.86966369114536,4.24310717725941,2.51085279189606,1.52826811495903,1.9704141467987,1.65292640758726,0.786728553697808,0,1.54816123316076,7.35536979583142,5.12050061923025,3.69754010166788,0.92960640696362,2.27470771979874,0.880801318004542,1.10799081706375,1.00272223735071,0.651032612147555,3.58264758783879,4.21061765824673,2.06060454107349,3.48955773070955,1.51150377475524,2.42584061187816,1.39457422143411,1.23350366406548,1.54853185447552,19.8507750702284,14.8573209786878,14.8983804829809,0.689491361473237,0.645484683583826,0,1.88242339542605,1.36453075028923,4.04502272001152,1.83650335422542,0.320929027076094,0,22.7597397128834,14.9597743216224,17.9014395223732,0.580418477257168,0.56738522469114,0.622822248995575,11.5574386018102,13.5585558789252,10.6422533905507,0.605399502633369,0.736555271975129,1.26584954976354,6.5489138756702,5.31510749912609,5.87044207423452,6.62738923764321,4.6554836780867,2.89306056054744,6.55529310604872,4.17725022118089,4.38393969035121,1.75996244461323,1.09227722252426,0.889509253863555,0.853460445133014,0.800791974072025,1.72425731986345,0,0.954053754535364,0,0,0.382273228125229,0,0,3.16060901730092,0.393419540227666,0,0.205601498999509,1.33749196312542,0,0,0,2.22820913770347,0.294605907474837,1.32920336750173,0.812411591295047,3.71464827204458,2.60118695119756,2.46656856905514,1.10540007114339,1.15921234294021,0,0,0,2.15287751125376,0.766440987203842,1.37450978193052,0.759059076058509,0.318565414324097,1.30216690771284,0.950452044448374,0.602300476311091,1.66382594500744,0,2.36777252044017,1.64225599384209,0.604820229674197,0.534880391567015,0,2.43806866313962,3.35350429851818,3.45228916977532,2.53007406669196,2.50668955317945,1.88300474649071,2.3858578411533,2.91980922181582,3.68685786939865,3.32594096193846,3.77689578480442,2.81605012320082,6.19301990097322,3.33705998505986,6.49094787309367,4.87563264437948,4.12169677608482,0.953962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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14133 | |||
|TSSclassifier=S | |||
|UniProt=A8MYR2 | |||
|association_with_transcript=-42bp_to_ENST00000399753_5end | |||
|coexpression_cluster_id=C2362 | |||
|description=CAGE_peak_2_at_SEPX1_5end | |||
|id=chr16:1993230..1993248,- | |||
|ontology_enrichment_celltype=CL:0000144!1.71e-16!625;CL:0002371!7.28e-16!591;CL:0000222!2.24e-14!119;CL:0000548!7.09e-12!679;CL:0000004!7.09e-12!679;CL:0000255!7.09e-12!679;CL:0000012!2.41e-11!682;CL:0002321!3.11e-11!248;CL:0000183!6.19e-11!59;CL:0000220!6.56e-11!246;CL:0000055!1.61e-09!180;CL:0000003!3.77e-09!722;CL:0000187!9.06e-09!54;CL:0000680!1.04e-08!57;CL:0000056!1.04e-08!57;CL:0000355!1.04e-08!57;CL:0000393!1.13e-08!60;CL:0000211!1.13e-08!60;CL:0000192!3.93e-08!42;CL:0000514!3.93e-08!42;CL:0002078!5.14e-07!44 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.68e-14,121;CL:0002321,3.34e-11,250;CL:0000393,2.45e-08,61;CL:0000211,2.45e-08,61;CL:0000187,2.55e-08,55;CL:0000680,2.80e-08,58;CL:0000056,2.80e-08,58;CL:0000355,2.80e-08,58;CL:0000192,1.25e-07,43;CL:0000514,1.25e-07,43;CL:0002078,2.07e-07,45;CL:0000115,6.20e-07,36;CL:0000213,8.88e-07,58;CL:0000215,8.88e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!8.46e-10!110;UBERON:0000914!9.82e-10!83;UBERON:0002329!9.82e-10!83;UBERON:0003077!9.82e-10!83;UBERON:0003059!9.82e-10!83;UBERON:0007282!9.82e-10!83;UBERON:0009618!9.82e-10!83;UBERON:0007285!9.82e-10!83;UBERON:0001009!2.29e-09!113;UBERON:0002049!4.37e-09!79;UBERON:0007798!4.37e-09!79;UBERON:0004290!1.07e-08!70;UBERON:0000486!1.63e-08!82;UBERON:0003081!4.03e-08!216;UBERON:0005256!4.90e-08!143;UBERON:0002100!1.89e-07!216;UBERON:0000055!2.71e-07!69;UBERON:0001134!3.26e-07!61;UBERON:0002036!3.26e-07!61;UBERON:0003082!3.26e-07!61;UBERON:0002385!9.46e-07!63;UBERON:0001015!9.46e-07!63;UBERON:0000383!9.46e-07!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,8.00e-11,78;UBERON:0000926,1.88e-10,315;UBERON:0004120,1.88e-10,315;UBERON:0006603,1.88e-10,315;UBERON:0004535,5.47e-10,109;UBERON:0001009,1.52e-09,112;UBERON:0002049,3.49e-09,78;UBERON:0007798,3.49e-09,78;UBERON:0007524,2.08e-08,73;UBERON:0002329,2.16e-08,71;UBERON:0003059,2.16e-08,71;UBERON:0007282,2.16e-08,71;UBERON:0004290,2.16e-08,71;UBERON:0009618,2.16e-08,71;UBERON:0000486,3.20e-08,83;UBERON:0003077,4.18e-08,72;UBERON:0007285,4.18e-08,72;UBERON:0003081,1.28e-07,203;UBERON:0000055,2.26e-07,68;UBERON:0001134,6.39e-07,62;UBERON:0002036,6.39e-07,62;UBERON:0003082,6.39e-07,62;UBERON:0002100,8.58e-07,199 | |||
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| |||
|short_description=p2@SEPX1 | |||
}} |
Revision as of 09:33, 11 September 2013
Short description: | p2@SEPX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SEPX1_5end |
Coexpression cluster: | C2362_Neutrophils_CD14_Whole_Eosinophils_Hepatocyte_Mesenchymal_blood |
Association with transcript: | -42bp_to_ENST00000399753_5end |
EntrezGene: | NA |
HGNC: | 14133 |
UniProt: | A8MYR2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.68e-14 | 121 |
embryonic cell | 3.34e-11 | 250 |
electrically responsive cell | 2.45e-08 | 61 |
electrically active cell | 2.45e-08 | 61 |
muscle cell | 2.55e-08 | 55 |
muscle precursor cell | 2.80e-08 | 58 |
myoblast | 2.80e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.80e-08 | 58 |
smooth muscle cell | 1.25e-07 | 43 |
smooth muscle myoblast | 1.25e-07 | 43 |
meso-epithelial cell | 2.07e-07 | 45 |
endothelial cell | 6.20e-07 | 36 |
lining cell | 8.88e-07 | 58 |
barrier cell | 8.88e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 8.00e-11 | 78 |
mesoderm | 1.88e-10 | 315 |
mesoderm-derived structure | 1.88e-10 | 315 |
presumptive mesoderm | 1.88e-10 | 315 |
cardiovascular system | 5.47e-10 | 109 |
circulatory system | 1.52e-09 | 112 |
vasculature | 3.49e-09 | 78 |
vascular system | 3.49e-09 | 78 |
dense mesenchyme tissue | 2.08e-08 | 73 |
somite | 2.16e-08 | 71 |
presomitic mesoderm | 2.16e-08 | 71 |
presumptive segmental plate | 2.16e-08 | 71 |
dermomyotome | 2.16e-08 | 71 |
trunk paraxial mesoderm | 2.16e-08 | 71 |
multilaminar epithelium | 3.20e-08 | 83 |
paraxial mesoderm | 4.18e-08 | 72 |
presumptive paraxial mesoderm | 4.18e-08 | 72 |
lateral plate mesoderm | 1.28e-07 | 203 |
vessel | 2.26e-07 | 68 |
skeletal muscle tissue | 6.39e-07 | 62 |
striated muscle tissue | 6.39e-07 | 62 |
myotome | 6.39e-07 | 62 |
trunk | 8.58e-07 | 199 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.