FFCP PHASE1:Hg19::chr15:67358111..67358122,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4088|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6769|TSSclassifier=S|UniProt=P84022|association_with_transcript=-60bp_to_ENST00000327367,ENST00000535241_5end|description=CAGE_peak_6_at_SMAD3_5end|id=chr15:67358111..67358122,+|ontology_enrichment_celltype=CL:0000222!2.85e-09!119;CL:0000183!2.29e-08!59|ontology_enrichment_celltype_v019=CL:1000507;7.10e-07;10!CL:1000494;7.10e-07;10|ontology_enrichment_celltype_v019_2=CL:0000222,1.35e-11,121;CL:0000187,3.14e-09,55;CL:0000680,4.76e-09,58;CL:0000056,4.76e-09,58;CL:0000355,4.76e-09,58;CL:0000393,3.39e-07,61;CL:0000211,3.39e-07,61|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!2.84e-09!312;UBERON:0000483!5.39e-09!309;UBERON:0005256!1.55e-08!143;UBERON:0000481!5.51e-08!347;UBERON:0000486!4.76e-07!82;UBERON:0003064!9.90e-07!37|ontology_enrichment_uberon_v019=UBERON:0004211;7.10e-07;10!UBERON:0009773;7.10e-07;10!UBERON:0001231;7.10e-07;10!UBERON:0004810;7.10e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0003104,3.45e-09,160;UBERON:0009142,3.45e-09,160;UBERON:0001134,6.35e-09,62;UBERON:0002036,6.35e-09,62;UBERON:0003082,6.35e-09,62;UBERON:0000486,9.80e-09,83;UBERON:0007503,1.20e-08,78;UBERON:0002385,2.95e-08,64;UBERON:0001015,2.95e-08,64;UBERON:0000383,2.95e-08,64;UBERON:0005256,1.23e-07,122;UBERON:0002329,1.73e-07,71;UBERON:0003059,1.73e-07,71;UBERON:0007282,1.73e-07,71;UBERON:0004290,1.73e-07,71;UBERON:0009618,1.73e-07,71;UBERON:0007524,2.42e-07,73;UBERON:0000119,3.14e-07,309;UBERON:0003077,3.23e-07,72;UBERON:0007285,3.23e-07,72;UBERON:0000483,6.15e-07,306|phase1_expression=0.363356758541113,0.214100523890983,0.563817616383885,0,0,0.872338524100369,0,0,1.30592814099919,1.47440361900905,2.09340350391728,0.218441372130172,0,0.74259811776028,3.64537113300707,1.34465029290355,0.602694528023977,0.730310090387373,0,2.33930010345897,1.63200552995402,2.5076377718247,0.572471974262113,0.684372125364421,0.753255837568817,0.61130724598361,0.328402357799783,0.472264687882075,0.786728553697808,0.767658796194425,2.16742572642506,0.919421224478927,0.6024118375565,0.739508020333575,0.232401601740905,0,0.880801318004542,1.10799081706375,3.20871115952227,1.73608696572681,0,0.32389366601898,0,1.16318591023652,0.755751887377619,0.970336244751265,1.16214518452842,0.822335776043652,0,0.575384784644301,1.5369642391746,0.709446689665756,1.03423704220986,0.645484683583826,2.70852973188684,2.63539275359647,0.818718450173537,0.224723484445085,1.83650335422542,2.24650318953266,1.27867425159808,0.659702600373432,1.99463657621632,0.852449501065388,0.290209238628584,0.56738522469114,2.4912889959823,2.26123798731069,1.5644487552606,0.65156653411535,1.81619850790011,0.368277635987565,0.316462387440884,0,0.637812899895131,0.209658645508376,0.112328631146495,0.300353785683013,0.32145117339416,0,0.19891667719909,0.182664153764634,0,0,0,0,0.800791974072025,0.574752439954483,0.661044872784862,0.954053754535364,0.569212969109448,2.34894875748376,1.14681968437569,1.32171328579026,0.560508562981536,0.263384084775077,0.393419540227666,1.17903228824749,0.822405995998037,0.501559486172034,0.651844533267181,0.473447805734733,0,0.222820913770347,0.589211814949674,0.443067789167242,0,0.384273959177026,0.650296737799391,0.657751618414705,0.552700035571697,0.869409257205157,0.593146252648242,0.267540828089713,0,0.339928028092699,0.383220493601921,0.34362744548263,1.01207876807801,0,0.651083453856419,0,0.301150238155546,0.127986611154418,2.49861453104692,0.236777252044017,0,0.201606743224732,0,0.434473211648397,4.87613732627923,1.34140171940727,1.02290049474824,2.89151321907653,1.50401373190767,1.59331170856906,0,0.486634870302636,2.45790524626576,1.33037638477538,1.93236528524877,1.30979075497713,3.27865759463288,0.741568885568859,0,0,0.132957960518865,0,2.28797964312051,0,0.39752481473341,0,0.347140501607594,2.26123176769604,1.67799774483962,1.92582629358047,0.417989933073621,2.84258435086262,1.06729878806013,0,0.805658634218294,1.52054421143703,0.488124115096339,0.735326160691737,2.43042584364528,0.625098097988558,0.673588117878509,0.675668882899933,1.53316637465883,0,0.916008719652036,0,0,2.18047026071267,0.496971951695318,1.2663051166458,0.926864265692532,2.0078563452417,2.12801029319014,1.12135520028461,0,1.72667283892012,0.311211035399766,0.404132016209064,0.817309515567294,0.908144565869588,1.15235184896,0.937285727335186,0.936480230490962,0.570471821544449,1.34503812496621,0.352303495931295,0.485618833104395,0,0.816616685019573,1.10550885580591,0.826606249406124,4.75201142912821,1.23633464639278,4.55080680969013,2.87447256726495,0.673344455816265,1.12606667884768,0.277064115484183,2.19488810440419,2.14541457059314,2.40380894250555,0.680593098960126,1.4351170855109,0.427114777637135,0.847727604638247,0.300091096084402,1.64884046781502,1.03056216018252,0.744467425326359,0.843881661206331,0.974370051611986,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |||
|TSSclassifier=S | |||
|UniProt=P84022 | |||
|association_with_transcript=-60bp_to_ENST00000327367,ENST00000535241_5end | |||
|description=CAGE_peak_6_at_SMAD3_5end | |||
|id=chr15:67358111..67358122,+ | |||
|ontology_enrichment_celltype=CL:0000222!2.85e-09!119;CL:0000183!2.29e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:1000507;7.10e-07;10!CL:1000494;7.10e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.35e-11,121;CL:0000187,3.14e-09,55;CL:0000680,4.76e-09,58;CL:0000056,4.76e-09,58;CL:0000355,4.76e-09,58;CL:0000393,3.39e-07,61;CL:0000211,3.39e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!2.84e-09!312;UBERON:0000483!5.39e-09!309;UBERON:0005256!1.55e-08!143;UBERON:0000481!5.51e-08!347;UBERON:0000486!4.76e-07!82;UBERON:0003064!9.90e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;7.10e-07;10!UBERON:0009773;7.10e-07;10!UBERON:0001231;7.10e-07;10!UBERON:0004810;7.10e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,3.45e-09,160;UBERON:0009142,3.45e-09,160;UBERON:0001134,6.35e-09,62;UBERON:0002036,6.35e-09,62;UBERON:0003082,6.35e-09,62;UBERON:0000486,9.80e-09,83;UBERON:0007503,1.20e-08,78;UBERON:0002385,2.95e-08,64;UBERON:0001015,2.95e-08,64;UBERON:0000383,2.95e-08,64;UBERON:0005256,1.23e-07,122;UBERON:0002329,1.73e-07,71;UBERON:0003059,1.73e-07,71;UBERON:0007282,1.73e-07,71;UBERON:0004290,1.73e-07,71;UBERON:0009618,1.73e-07,71;UBERON:0007524,2.42e-07,73;UBERON:0000119,3.14e-07,309;UBERON:0003077,3.23e-07,72;UBERON:0007285,3.23e-07,72;UBERON:0000483,6.15e-07,306 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.563817616383885,0,0,0.872338524100369,0,0,1.30592814099919,1.47440361900905,2.09340350391728,0.218441372130172,0,0.74259811776028,3.64537113300707,1.34465029290355,0.602694528023977,0.730310090387373,0,2.33930010345897,1.63200552995402,2.5076377718247,0.572471974262113,0.684372125364421,0.753255837568817,0.61130724598361,0.328402357799783,0.472264687882075,0.786728553697808,0.767658796194425,2.16742572642506,0.919421224478927,0.6024118375565,0.739508020333575,0.232401601740905,0,0.880801318004542,1.10799081706375,3.20871115952227,1.73608696572681,0,0.32389366601898,0,1.16318591023652,0.755751887377619,0.970336244751265,1.16214518452842,0.822335776043652,0,0.575384784644301,1.5369642391746,0.709446689665756,1.03423704220986,0.645484683583826,2.70852973188684,2.63539275359647,0.818718450173537,0.224723484445085,1.83650335422542,2.24650318953266,1.27867425159808,0.659702600373432,1.99463657621632,0.852449501065388,0.290209238628584,0.56738522469114,2.4912889959823,2.26123798731069,1.5644487552606,0.65156653411535,1.81619850790011,0.368277635987565,0.316462387440884,0,0.637812899895131,0.209658645508376,0.112328631146495,0.300353785683013,0.32145117339416,0,0.19891667719909,0.182664153764634,0,0,0,0,0.800791974072025,0.574752439954483,0.661044872784862,0.954053754535364,0.569212969109448,2.34894875748376,1.14681968437569,1.32171328579026,0.560508562981536,0.263384084775077,0.393419540227666,1.17903228824749,0.822405995998037,0.501559486172034,0.651844533267181,0.473447805734733,0,0.222820913770347,0.589211814949674,0.443067789167242,0,0.384273959177026,0.650296737799391,0.657751618414705,0.552700035571697,0.869409257205157,0.593146252648242,0.267540828089713,0,0.339928028092699,0.383220493601921,0.34362744548263,1.01207876807801,0,0.651083453856419,0,0.301150238155546,0.127986611154418,2.49861453104692,0.236777252044017,0,0.201606743224732,0,0.434473211648397,4.87613732627923,1.34140171940727,1.02290049474824,2.89151321907653,1.50401373190767,1.59331170856906,0,0.486634870302636,2.45790524626576,1.33037638477538,1.93236528524877,1.30979075497713,3.27865759463288,0.741568885568859,0,0,0.132957960518865,0,2.28797964312051,0,0.39752481473341,0,0.347140501607594,2.26123176769604,1.67799774483962,1.92582629358047,0.417989933073621,2.84258435086262,1.06729878806013,0,0.805658634218294,1.52054421143703,0.488124115096339,0.735326160691737,2.43042584364528,0.625098097988558,0.673588117878509,0.675668882899933,1.53316637465883,0,0.916008719652036,0,0,2.18047026071267,0.496971951695318,1.2663051166458,0.926864265692532,2.0078563452417,2.12801029319014,1.12135520028461,0,1.72667283892012,0.311211035399766,0.404132016209064,0.817309515567294,0.908144565869588,1.15235184896,0.937285727335186,0.936480230490962,0.570471821544449,1.34503812496621,0.352303495931295,0.485618833104395,0,0.816616685019573,1.10550885580591,0.826606249406124,4.75201142912821,1.23633464639278,4.55080680969013,2.87447256726495,0.673344455816265,1.12606667884768,0.277064115484183,2.19488810440419,2.14541457059314,2.40380894250555,0.680593098960126,1.4351170855109,0.427114777637135,0.847727604638247,0.300091096084402,1.64884046781502,1.03056216018252,0.744467425326359,0.843881661206331,0.974370051611986,0.504867548488229,1.01254888506529,3.07127507955743,0.710019185033229,0.201504196455281,0.847802961552438,0.773043412653187,0,0.573609190778008,0.243947412259191,0.397589304964456,0.580969714347592,0.414644220061482,0.252320850875628,0.72995471815166,3.12899064659632,0.643240938192885,0,1.39310378409594,0,0.473227200159376,0.674338760312407,0.482022059766964,0.110293972732394,0.653638332277218,0.237270619111097,0.269662616320329,0,0,1.4763109092493,0,2.057870056657,0,0,0,0,0,0.614942192715568,2.40194934417936,1.42675371031213,0,0.301586917234893,2.4998880192803,1.3032332212413,1.03993478527958,1.44331342025273,2.43453850447661,1.87853910777315,1.01056513432752,0.925971025153221,0.570762456703795,1.58040879591855,0.858486162094873,0,0,0,0,0.671928512795438,0.425325291727159,0.179117045405697,0.871901815541886,0,0,0.704387472105808,1.03664057770386,0.288239906833923,1.00993946741104,0.444485260045183,0.763976851116555,1.17217447210047,1.71072446022705,0.514137463516618,0.300343057843917,0,1.12131084345361,3.48768055066624,0.36669142910475,1.03417372606222,7.15312891703765,0.845302752556,0.26593811658487,1.04007436911366,1.54324424557285,0,0.799266537048298,0.857867961948885,1.08524321078289,0,1.30294473717494,0.710783897485092,0.791951872933429,2.41151501647669,0,1.3996218765488,0,0.502257091432126,0,0.239624855491583,0,0,0.144781306667579,3.6985738059069,0.358121926479791,0.672510863961164,0.394061520403854,0.862510299438069,0.77005821767849,0.508189248444927,0,0,0.167516265334349,0,0.749007023947182,0,0.414415513436035,3.0672872929785,3.00102312635806,1.89885516589815,1.24782516918484,1.60586089917446,1.26161932027148,1.05427273493442,0.601892199455438,0,0,0,1.65932251687533,1.65078867489357,2.93701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| |||
|short_description=p6@SMAD3 | |||
}} |
Revision as of 07:56, 11 September 2013
Short description: | p6@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_SMAD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -60bp_to_ENST00000327367, ENST00000535241_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | P84022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.35e-11 | 121 |
muscle cell | 3.14e-09 | 55 |
muscle precursor cell | 4.76e-09 | 58 |
myoblast | 4.76e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.76e-09 | 58 |
electrically responsive cell | 3.39e-07 | 61 |
electrically active cell | 3.39e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 3.45e-09 | 160 |
entire embryonic mesenchyme | 3.45e-09 | 160 |
skeletal muscle tissue | 6.35e-09 | 62 |
striated muscle tissue | 6.35e-09 | 62 |
myotome | 6.35e-09 | 62 |
multilaminar epithelium | 9.80e-09 | 83 |
epithelial vesicle | 1.20e-08 | 78 |
muscle tissue | 2.95e-08 | 64 |
musculature | 2.95e-08 | 64 |
musculature of body | 2.95e-08 | 64 |
trunk mesenchyme | 1.23e-07 | 122 |
somite | 1.73e-07 | 71 |
presomitic mesoderm | 1.73e-07 | 71 |
presumptive segmental plate | 1.73e-07 | 71 |
dermomyotome | 1.73e-07 | 71 |
trunk paraxial mesoderm | 1.73e-07 | 71 |
dense mesenchyme tissue | 2.42e-07 | 73 |
cell layer | 3.14e-07 | 309 |
paraxial mesoderm | 3.23e-07 | 72 |
presumptive paraxial mesoderm | 3.23e-07 | 72 |
epithelium | 6.15e-07 | 306 |
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