FFCP PHASE1:Hg19::chr15:66994718..66994729,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4091|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6772|TSSclassifier=S|UniProt=O43541|association_with_transcript=44bp_to_ENST00000457357,NM_005585,NR_027654,uc002aqf.2,uc010bhx.2_5end|description=CAGE_peak_4_at_SMAD6_5end|id=chr15:66994718..66994729,+|ontology_enrichment_celltype=CL:0000153!3.09e-07!9;CL:0000447!3.09e-07!9;CL:0000136!9.34e-07!15|ontology_enrichment_celltype_v019=CL:0000153;3.48e-13;9!CL:0000447;3.48e-13;9!CL:0000136;1.55e-12;13!CL:0002615;4.92e-08;3!CL:0000214;6.53e-08;3!CL:0000064;1.62e-07;3!CL:0000067;1.62e-07;3!CL:0005012;1.62e-07;3!CL:0002304;1.62e-07;3!CL:0000327;2.16e-07;15!CL:0000138;2.34e-07;6|ontology_enrichment_celltype_v019_2=CL:0000153,3.26e-13,9;CL:0000447,3.26e-13,9;CL:0000136,3.92e-11,15;CL:0002615,4.62e-08,3;CL:0000064,5.71e-08,3;CL:0000067,5.71e-08,3;CL:0005012,5.71e-08,3;CL:0002304,5.71e-08,3;CL:0000214,5.98e-08,3;CL:0000327,2.08e-07,15;CL:0000058,2.34e-07,6;CL:0000138,2.34e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0004457;9.95e-16;9!UBERON:0000042;9.95e-16;9!UBERON:0007625;6.84e-10;11!UBERON:0003688;1.18e-09;6!UBERON:0002358;1.18e-09;6!UBERON:0003684;1.18e-09;6!UBERON:0001178;1.18e-09;6!UBERON:0000488;2.40e-09;4!UBERON:0000970;4.70e-08;20!UBERON:0006915;6.53e-08;3!UBERON:0007616;6.53e-08;3!UBERON:0002217;6.53e-08;3!UBERON:0002018;6.53e-08;3!UBERON:0002104;1.39e-07;21!UBERON:0001456;1.39e-07;21!UBERON:0001778;1.62e-07;3!UBERON:0001775;1.62e-07;3!UBERON:0000019;7.44e-07;19!UBERON:0000047;7.44e-07;19!UBERON:0004088;7.44e-07;19!UBERON:0010230;7.44e-07;19!UBERON:0000020;9.10e-07;23|ontology_enrichment_uberon_v019_2=UBERON:0004457,2.74e-11,12;UBERON:0000042,2.74e-11,12;UBERON:0007625,4.37e-10,11;UBERON:0000488,1.18e-09,4;UBERON:0003688,1.77e-09,6;UBERON:0002358,1.77e-09,6;UBERON:0003684,1.77e-09,6;UBERON:0001178,1.77e-09,6;UBERON:0001778,5.71e-08,3;UBERON:0001775,5.71e-08,3;UBERON:0006915,5.98e-08,3;UBERON:0007616,5.98e-08,3;UBERON:0002217,5.98e-08,3;UBERON:0002018,5.98e-08,3;UBERON:0000970,9.88e-08,21;UBERON:0002104,9.88e-08,21;UBERON:0001456,2.60e-07,22|phase1_expression=1.81678379270557,1.2846031433459,2.96004248601539,3.00219895059391,1.34088328328186,1.74467704820074,0,0.631719873426831,0.261185628199839,0.245733936501509,0,0,0,0.37129905888014,0.331397375727916,0.672325146451775,0,0,0,0.246242116153576,1.22400414746552,0.626909442956176,1.14494394852423,0.547497700291537,0.753255837568817,0,0,0,0.786728553697808,0,0.619264493264304,0,0,0,0,0,0,0,0.601633342410425,0.434021741431704,0,0,0,0.581592955118259,0.755751887377619,0,0,0,0,0,0,0.236482229888585,0.689491361473237,0.645484683583826,0,0.188242339542605,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0.434377689410233,0,0,0,0.422510572623884,0,0,0.112328631146495,0.150176892841506,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,2.64342657158052,2.24203425192614,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0,3.32442660793179,5.06014813338393,5.0133791063589,4.77993512570718,0.795285947051099,2.43317435151318,2.26883561193763,1.99556457716308,1.58102614247627,1.17881167947941,0,0,0,0,0.132957960518865,0.238490624305342,0,0,0,0,0.347140501607594,0.56530794192401,0.419499436209906,0,0.208994966536811,0,0.71153252537342,0,0.402829317109147,0,0.24406205754817,0.367663080345869,0,0.17859945656816,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0.25326102332916,0.132409180813219,0.286836620748814,0.709336764396714,0.560677600142307,3.20246987189115,1.48000529050296,0.311211035399766,1.21239604862719,1.63461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.453728732640084,0.538168907066586,0,0.211931901159562,0.900273288253207,0.515262646192195,0.772921620136887,0.37223371266318,2.19409231913646,0.68205903612839,1.00973509697646,0,1.2931684545505,1.06502877754984,0.806016785821122,1.01736355386293,0,0,0,0.121973706129595,0.795178609928912,0.464775771478074,0,0,0.36497735907583,0,0.643240938192885,0,0,0,0.236613600079688,0.505754070234305,1.20505514941741,0.882351781859152,1.08939722046203,0.474541238222193,0.674156540800822,0.588664395376038,0.38474715694639,1.4763109092493,0,0,0,0,0,0,0,0,1.20097467208968,0,0,0,0,0,0,0,2.55046890945169,0.234817388471643,0,0,0.380508304469197,0.790204397959275,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.129271715757778,0,0,0,0,0.514414748524284,0,0.266422179016099,0.428933980974443,1.62786481617433,0,0,0.710783897485092,0,0.602878754119172,0,1.09970290300263,0,0,0,0.239624855491583,0,0,0.289562613335158,0.205476322550383,0.716243852959582,0,0,0,0,0.254094624222463,0,0.773288812777695,0.335032530668698,3.18969375826582,0,0,0,0.981531933753119,0,0,0.207970861530807,0.356857977594324,0.315404830067869,0,0,0,0,0,0.18436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80059,0.101988829741982,0,0.0918948995348449,0.250707539292375,0,0,0,0,0.213233981900981,0.714193294391221,0.0645889098360061,0.186224142887574,0.560659312903067,1.46388464039779,0.808468755832877,0.217716747896961,0,0.0673520530145875,0,0.665320713092027,0.162806537221949,0,0,0.628776414746108,0,0.244482888365733,0,1.33151354837103,0.201273793591026,0|short_description=p4@SMAD6}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6772 | |||
|TSSclassifier=S | |||
|UniProt=O43541 | |||
|association_with_transcript=44bp_to_ENST00000457357,NM_005585,NR_027654,uc002aqf.2,uc010bhx.2_5end | |||
|description=CAGE_peak_4_at_SMAD6_5end | |||
|id=chr15:66994718..66994729,+ | |||
|ontology_enrichment_celltype=CL:0000153!3.09e-07!9;CL:0000447!3.09e-07!9;CL:0000136!9.34e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000153;3.48e-13;9!CL:0000447;3.48e-13;9!CL:0000136;1.55e-12;13!CL:0002615;4.92e-08;3!CL:0000214;6.53e-08;3!CL:0000064;1.62e-07;3!CL:0000067;1.62e-07;3!CL:0005012;1.62e-07;3!CL:0002304;1.62e-07;3!CL:0000327;2.16e-07;15!CL:0000138;2.34e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,3.26e-13,9;CL:0000447,3.26e-13,9;CL:0000136,3.92e-11,15;CL:0002615,4.62e-08,3;CL:0000064,5.71e-08,3;CL:0000067,5.71e-08,3;CL:0005012,5.71e-08,3;CL:0002304,5.71e-08,3;CL:0000214,5.98e-08,3;CL:0000327,2.08e-07,15;CL:0000058,2.34e-07,6;CL:0000138,2.34e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;9.95e-16;9!UBERON:0000042;9.95e-16;9!UBERON:0007625;6.84e-10;11!UBERON:0003688;1.18e-09;6!UBERON:0002358;1.18e-09;6!UBERON:0003684;1.18e-09;6!UBERON:0001178;1.18e-09;6!UBERON:0000488;2.40e-09;4!UBERON:0000970;4.70e-08;20!UBERON:0006915;6.53e-08;3!UBERON:0007616;6.53e-08;3!UBERON:0002217;6.53e-08;3!UBERON:0002018;6.53e-08;3!UBERON:0002104;1.39e-07;21!UBERON:0001456;1.39e-07;21!UBERON:0001778;1.62e-07;3!UBERON:0001775;1.62e-07;3!UBERON:0000019;7.44e-07;19!UBERON:0000047;7.44e-07;19!UBERON:0004088;7.44e-07;19!UBERON:0010230;7.44e-07;19!UBERON:0000020;9.10e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004457,2.74e-11,12;UBERON:0000042,2.74e-11,12;UBERON:0007625,4.37e-10,11;UBERON:0000488,1.18e-09,4;UBERON:0003688,1.77e-09,6;UBERON:0002358,1.77e-09,6;UBERON:0003684,1.77e-09,6;UBERON:0001178,1.77e-09,6;UBERON:0001778,5.71e-08,3;UBERON:0001775,5.71e-08,3;UBERON:0006915,5.98e-08,3;UBERON:0007616,5.98e-08,3;UBERON:0002217,5.98e-08,3;UBERON:0002018,5.98e-08,3;UBERON:0000970,9.88e-08,21;UBERON:0002104,9.88e-08,21;UBERON:0001456,2.60e-07,22 | |||
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| |||
|short_description=p4@SMAD6 | |||
}} |
Revision as of 07:56, 11 September 2013
Short description: | p4@SMAD6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SMAD6_5end |
Coexpression cluster: | NA |
Association with transcript: | 44bp_to_ENST00000457357, NM_005585, NR_027654, uc002aqf.2, uc010bhx.2_5end |
EntrezGene: | SMAD6 |
HGNC: | 6772 |
UniProt: | O43541 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 3.26e-13 | 9 |
carbohydrate secreting cell | 3.26e-13 | 9 |
fat cell | 3.92e-11 | 15 |
adipocyte of omentum tissue | 4.62e-08 | 3 |
ciliated cell | 5.71e-08 | 3 |
ciliated epithelial cell | 5.71e-08 | 3 |
multi-ciliated epithelial cell | 5.71e-08 | 3 |
non-pigmented ciliary epithelial cell | 5.71e-08 | 3 |
synovial cell | 5.98e-08 | 3 |
extracellular matrix secreting cell | 2.08e-07 | 15 |
chondroblast | 2.34e-07 | 6 |
chondrocyte | 2.34e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cavity lining | 2.74e-11 | 12 |
serous membrane | 2.74e-11 | 12 |
pigment epithelium of eye | 4.37e-10 | 11 |
atypical epithelium | 1.18e-09 | 4 |
omentum | 1.77e-09 | 6 |
peritoneum | 1.77e-09 | 6 |
abdominal cavity | 1.77e-09 | 6 |
visceral peritoneum | 1.77e-09 | 6 |
ciliary epithelium | 5.71e-08 | 3 |
ciliary body | 5.71e-08 | 3 |
stratified squamous epithelium | 5.98e-08 | 3 |
layer of synovial tissue | 5.98e-08 | 3 |
synovial joint | 5.98e-08 | 3 |
synovial membrane of synovial joint | 5.98e-08 | 3 |
eye | 9.88e-08 | 21 |
visual system | 9.88e-08 | 21 |
face | 2.60e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.