FFCP PHASE1:Hg19::chr15:55562567..55562578,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5873|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9766|TSSclassifier=S|UniProt=|association_with_transcript=6bp_to_ENST00000396304,uc002acp.2_5end|coexpression_cluster_id=C58|description=CAGE_peak_5_at_RAB27A_5end|id=chr15:55562567..55562578,-|ontology_enrichment_celltype=CL:0000147!3.48e-52!14;CL:0000149!8.71e-37!4;CL:0000148!2.60e-33!10;CL:0000541!2.60e-33!10;CL:0002586!9.01e-28!3;CL:0000325!5.58e-18!39;CL:0000710!1.80e-16!20;CL:0002567!1.93e-13!3;CL:0000075!4.36e-12!27;CL:0002566!7.40e-11!1;CL:0002077!8.37e-10!33;CL:0000333!2.08e-07!41|ontology_enrichment_celltype_v019=CL:0000148;4.40e-71;10!CL:0000147;9.22e-69;14!CL:0000710;1.17e-35;20!CL:0002567;2.38e-27;3!CL:0000075;1.90e-26;27!CL:0002566;1.88e-21;1!CL:0000149;9.46e-21;4!CL:0002077;1.02e-19;34!CL:0002586;7.76e-08;3|ontology_enrichment_celltype_v019_2=CL:0000148,3.90e-71,10;CL:0000541,3.90e-71,10;CL:0000147,9.22e-69,14;CL:0000710,1.10e-35,20;CL:0002567,2.38e-27,3;CL:0000075,1.82e-26,27;CL:0002566,1.88e-21,1;CL:0002077,4.93e-21,34;CL:0000149,1.05e-20,4;CL:0000333,1.23e-16,41;CL:0000133,1.03e-11,59;CL:0000221,1.22e-09,72;CL:0002586,8.29e-08,3|ontology_enrichment_development_v019=UBERON:0003056;6.78e-08;3|ontology_enrichment_disease=DOID:1909!1.36e-19!2|ontology_enrichment_disease_v019=DOID:1909;3.01e-40;2|ontology_enrichment_disease_v019_2=DOID:1909,3.01e-40,2|ontology_enrichment_uberon=UBERON:0000966!2.22e-29!5;UBERON:0005388!2.22e-29!5;UBERON:0001802!2.22e-29!5;UBERON:0001781!9.01e-28!3;UBERON:0001782!9.01e-28!3;UBERON:0005424!9.01e-28!3;UBERON:0000970!2.68e-11!20;UBERON:0002104!9.38e-11!21;UBERON:0003112!3.61e-10!1;UBERON:0000032!3.61e-10!1;UBERON:0005253!3.61e-10!1;UBERON:0003128!3.61e-10!1;UBERON:0002241!3.61e-10!1;UBERON:0001703!3.61e-10!1;UBERON:0004761!3.61e-10!1;UBERON:0009617!3.61e-10!1;UBERON:0007190!4.75e-10!1;UBERON:0000020!8.32e-10!23;UBERON:0001032!2.16e-09!24;UBERON:0004456!2.16e-09!24;UBERON:0007625!5.47e-08!11;UBERON:0000019!6.79e-08!19;UBERON:0000047!6.79e-08!19;UBERON:0004088!6.79e-08!19;UBERON:0003072!6.79e-08!19;UBERON:0003071!6.79e-08!19;UBERON:0004128!6.79e-08!19;UBERON:0001456!3.73e-07!21|ontology_enrichment_uberon_v019=UBERON:0000966;1.12e-16;5!UBERON:0005388;1.12e-16;5!UBERON:0001802;1.12e-16;5!UBERON:0001781;7.76e-08;3!UBERON:0001782;7.76e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.84e-14,6;UBERON:0005388,4.84e-14,6;UBERON:0001802,4.84e-14,6;UBERON:0001782,8.29e-08,3;UBERON:0005424,8.29e-08,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,20.3828240677863,4.20187268114105,4.68869788840188,0,2.98199728839638,15.0171528921959,23.723593908338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0.328014645699706,2.27764876265012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,2.88133323329131,5.99477200444432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07349139959622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p5@RAB27A}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=5873 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9766 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=6bp_to_ENST00000396304,uc002acp.2_5end | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_5_at_RAB27A_5end | |||
|id=chr15:55562567..55562578,- | |||
|ontology_enrichment_celltype=CL:0000147!3.48e-52!14;CL:0000149!8.71e-37!4;CL:0000148!2.60e-33!10;CL:0000541!2.60e-33!10;CL:0002586!9.01e-28!3;CL:0000325!5.58e-18!39;CL:0000710!1.80e-16!20;CL:0002567!1.93e-13!3;CL:0000075!4.36e-12!27;CL:0002566!7.40e-11!1;CL:0002077!8.37e-10!33;CL:0000333!2.08e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:0000148;4.40e-71;10!CL:0000147;9.22e-69;14!CL:0000710;1.17e-35;20!CL:0002567;2.38e-27;3!CL:0000075;1.90e-26;27!CL:0002566;1.88e-21;1!CL:0000149;9.46e-21;4!CL:0002077;1.02e-19;34!CL:0002586;7.76e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.90e-71,10;CL:0000541,3.90e-71,10;CL:0000147,9.22e-69,14;CL:0000710,1.10e-35,20;CL:0002567,2.38e-27,3;CL:0000075,1.82e-26,27;CL:0002566,1.88e-21,1;CL:0002077,4.93e-21,34;CL:0000149,1.05e-20,4;CL:0000333,1.23e-16,41;CL:0000133,1.03e-11,59;CL:0000221,1.22e-09,72;CL:0002586,8.29e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.78e-08;3 | |||
|ontology_enrichment_disease=DOID:1909!1.36e-19!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;3.01e-40;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.01e-40,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!2.22e-29!5;UBERON:0005388!2.22e-29!5;UBERON:0001802!2.22e-29!5;UBERON:0001781!9.01e-28!3;UBERON:0001782!9.01e-28!3;UBERON:0005424!9.01e-28!3;UBERON:0000970!2.68e-11!20;UBERON:0002104!9.38e-11!21;UBERON:0003112!3.61e-10!1;UBERON:0000032!3.61e-10!1;UBERON:0005253!3.61e-10!1;UBERON:0003128!3.61e-10!1;UBERON:0002241!3.61e-10!1;UBERON:0001703!3.61e-10!1;UBERON:0004761!3.61e-10!1;UBERON:0009617!3.61e-10!1;UBERON:0007190!4.75e-10!1;UBERON:0000020!8.32e-10!23;UBERON:0001032!2.16e-09!24;UBERON:0004456!2.16e-09!24;UBERON:0007625!5.47e-08!11;UBERON:0000019!6.79e-08!19;UBERON:0000047!6.79e-08!19;UBERON:0004088!6.79e-08!19;UBERON:0003072!6.79e-08!19;UBERON:0003071!6.79e-08!19;UBERON:0004128!6.79e-08!19;UBERON:0001456!3.73e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.12e-16;5!UBERON:0005388;1.12e-16;5!UBERON:0001802;1.12e-16;5!UBERON:0001781;7.76e-08;3!UBERON:0001782;7.76e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.84e-14,6;UBERON:0005388,4.84e-14,6;UBERON:0001802,4.84e-14,6;UBERON:0001782,8.29e-08,3;UBERON:0005424,8.29e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,20.3828240677863,4.20187268114105,4.68869788840188,0,2.98199728839638,15.0171528921959,23.723593908338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0.328014645699706,2.27764876265012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,2.88133323329131,5.99477200444432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07349139959622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@RAB27A | |||
}} |
Revision as of 07:30, 11 September 2013
Short description: | p5@RAB27A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_RAB27A_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 6bp_to_ENST00000396304, uc002acp.2_5end |
EntrezGene: | RAB27A |
HGNC: | 9766 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.90e-71 | 10 |
melanoblast | 3.90e-71 | 10 |
pigment cell | 9.22e-69 | 14 |
neurecto-epithelial cell | 1.10e-35 | 20 |
light melanocyte | 2.38e-27 | 3 |
columnar/cuboidal epithelial cell | 1.82e-26 | 27 |
dark melanocyte | 1.88e-21 | 1 |
ecto-epithelial cell | 4.93e-21 | 34 |
visual pigment cell | 1.05e-20 | 4 |
migratory neural crest cell | 1.23e-16 | 41 |
neurectodermal cell | 1.03e-11 | 59 |
ectodermal cell | 1.22e-09 | 72 |
retinal pigment epithelial cell | 8.29e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
retina | 4.84e-14 | 6 |
photoreceptor array | 4.84e-14 | 6 |
posterior segment of eyeball | 4.84e-14 | 6 |
pigmented layer of retina | 8.29e-08 | 3 |
presumptive retinal pigmented epithelium | 8.29e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.01e-40 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.