FFCP PHASE1:Hg19::chr15:49915758..49915760,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr15:49915758..49915760,+|id=chr15:49915758..49915760,+|ontology_enrichment_celltype=CL:0002057!8.68e-45!42;CL:0000860!3.41e-41!45;CL:0000557!3.49e-34!71;CL:0000839!8.90e-33!70;CL:0000766!2.13e-31!76;CL:0002009!2.60e-31!65;CL:0002194!1.56e-30!63;CL:0000576!1.56e-30!63;CL:0000040!1.56e-30!63;CL:0000559!1.56e-30!63;CL:0000763!1.25e-20!112;CL:0000049!1.25e-20!112;CL:0002031!2.20e-15!124;CL:0000738!1.61e-13!140;CL:0002087!4.06e-12!119;CL:0002032!7.89e-11!165;CL:0000837!7.89e-11!165;CL:0000037!5.22e-10!172;CL:0000566!5.22e-10!172;CL:0000988!5.89e-09!182;CL:0002393!5.56e-07!9;CL:0002397!5.56e-07!9|ontology_enrichment_celltype_v019=CL:0000860;5.24e-17;33!CL:0002057;5.24e-17;33!CL:0000473;3.68e-14;39!CL:0000234;3.68e-14;39!CL:0000576;2.74e-12;48!CL:0002541;3.33e-10;3!CL:0000875;6.13e-10;3!CL:0002396;6.13e-10;3!CL:0000766;1.06e-09;69!CL:0002166;1.12e-09;3!CL:0000342;7.09e-08;1!CL:0002565;7.09e-08;1!CL:0000306;1.16e-07;4!CL:0002222;1.16e-07;4!CL:0002224;1.16e-07;4|ontology_enrichment_celltype_v019_2=CL:0000473,1.87e-24,48;CL:0000234,1.87e-24,48;CL:0000860,3.63e-24,42;CL:0002057,3.63e-24,42;CL:0000839,2.33e-19,66;CL:0000557,4.96e-19,67;CL:0002194,5.07e-19,59;CL:0000576,5.07e-19,59;CL:0000040,5.07e-19,59;CL:0000559,5.07e-19,59;CL:0002009,2.55e-18,61;CL:0000766,1.59e-17,72;CL:0000763,9.02e-11,108;CL:0000049,9.02e-11,108;CL:0002541,3.33e-10,3;CL:0000875,4.58e-10,3;CL:0002396,4.58e-10,3;CL:0002166,1.59e-09,3;CL:0002031,2.04e-09,120;CL:0002087,1.53e-08,115;CL:0000342,4.40e-08,1;CL:0002565,4.40e-08,1;CL:0000738,5.56e-08,136;CL:0000306,1.07e-07,4;CL:0002222,1.07e-07,4;CL:0002224,1.07e-07,4;CL:0002393,3.35e-07,9;CL:0002397,3.35e-07,9|ontology_enrichment_development_v019=CL:0002057;5.80e-17;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!3.24e-29!80;UBERON:0001474!1.75e-26!86;UBERON:0004765!3.22e-24!101;UBERON:0001434!3.22e-24!101;UBERON:0002390!8.82e-21!102;UBERON:0003061!8.82e-21!102;UBERON:0002193!2.97e-19!112;UBERON:0002405!1.71e-18!115;UBERON:0002204!2.81e-15!167;UBERON:0003081!1.86e-11!216;UBERON:0001737!2.57e-08!9|ontology_enrichment_uberon_v019=UBERON:0005631;3.40e-11;10!UBERON:0000158;3.40e-11;10!UBERON:0003124;3.33e-10;3!UBERON:0000920;3.33e-10;3!UBERON:0002506;7.09e-08;1!UBERON:0001769;7.09e-08;1!UBERON:0010077;1.16e-07;4!UBERON:0005389;1.16e-07;4!UBERON:0000484;1.16e-07;4!UBERON:0000965;1.16e-07;4!UBERON:0001803;1.16e-07;4!UBERON:0001708;1.81e-07;4!UBERON:0008895;1.81e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0004765,1.25e-17,90;UBERON:0002371,1.83e-16,76;UBERON:0001434,1.50e-15,100;UBERON:0001474,4.63e-15,82;UBERON:0002405,5.90e-13,93;UBERON:0002390,3.74e-12,98;UBERON:0003061,3.74e-12,98;UBERON:0002193,9.02e-11,108;UBERON:0000920,3.33e-10,3;UBERON:0002204,3.13e-09,167;UBERON:0002506,4.40e-08,1;UBERON:0001769,4.40e-08,1;UBERON:0005631,4.71e-08,14;UBERON:0000158,4.71e-08,14;UBERON:0010077,1.07e-07,4;UBERON:0005389,1.07e-07,4;UBERON:0000484,1.07e-07,4;UBERON:0002546,1.07e-07,4;UBERON:0000965,1.07e-07,4;UBERON:0001803,1.07e-07,4;UBERON:0003073,1.07e-07,4;UBERON:0005426,1.07e-07,4;UBERON:0001708,2.36e-07,4;UBERON:0008895,2.36e-07,4;UBERON:0003081,4.70e-07,203|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,0,0,0,0,0,0,0,0,0,0,0,0,0.872389432677388,0.755751887377619,0.727752183563449,0.232429036905685,0.411167888021826,0.929119112685311,0,0.512321413058201,1.41889337933151,0,1.93645405075148,2.70852973188684,0.376484679085209,1.36453075028923,2.02251136000576,0.306083892370903,0,3.83602275479425,0,0.199463657621632,0,0.580418477257168,1.13477044938228,1.24564449799115,0,0.521482918420201,1.52032191293582,0.605399502633369,0,1.26584954976354,0.845021145247767,1.06302149982522,0.838634582033504,0,0.750884464207532,0.48217676009124,0,2.98375015798635,1.46131323011707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0.334372990781356,0,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9408389224012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77810662500693,0,0,0,0,0,0,0,0,0,0,0.756962552626885,0,0,0,0,0,0,0.828147600278907,0.505754070234305,0,0.110293972732394,0,0.237270619111097,0.539325232640658,0.196221465125346,0,0,0,0,0,0,0,0,0,0,1.88724591328378,0,0,0,0,0,0,0,1.73895607462615,2.23076519048061,0,0,0.190254152234598,0,0,0,0,0.148631162288728,0,1.00789276919316,1.41775097242386,0,0,0,0,0.352193736052904,0,0.864719720501769,1.38866676769018,0.698476837213859,0,0,0,0,0.300343057843917,2.00078502841405,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr15:49915758..49915760,+ | |||
|id=chr15:49915758..49915760,+ | |||
|ontology_enrichment_celltype=CL:0002057!8.68e-45!42;CL:0000860!3.41e-41!45;CL:0000557!3.49e-34!71;CL:0000839!8.90e-33!70;CL:0000766!2.13e-31!76;CL:0002009!2.60e-31!65;CL:0002194!1.56e-30!63;CL:0000576!1.56e-30!63;CL:0000040!1.56e-30!63;CL:0000559!1.56e-30!63;CL:0000763!1.25e-20!112;CL:0000049!1.25e-20!112;CL:0002031!2.20e-15!124;CL:0000738!1.61e-13!140;CL:0002087!4.06e-12!119;CL:0002032!7.89e-11!165;CL:0000837!7.89e-11!165;CL:0000037!5.22e-10!172;CL:0000566!5.22e-10!172;CL:0000988!5.89e-09!182;CL:0002393!5.56e-07!9;CL:0002397!5.56e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.24e-17;33!CL:0002057;5.24e-17;33!CL:0000473;3.68e-14;39!CL:0000234;3.68e-14;39!CL:0000576;2.74e-12;48!CL:0002541;3.33e-10;3!CL:0000875;6.13e-10;3!CL:0002396;6.13e-10;3!CL:0000766;1.06e-09;69!CL:0002166;1.12e-09;3!CL:0000342;7.09e-08;1!CL:0002565;7.09e-08;1!CL:0000306;1.16e-07;4!CL:0002222;1.16e-07;4!CL:0002224;1.16e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.87e-24,48;CL:0000234,1.87e-24,48;CL:0000860,3.63e-24,42;CL:0002057,3.63e-24,42;CL:0000839,2.33e-19,66;CL:0000557,4.96e-19,67;CL:0002194,5.07e-19,59;CL:0000576,5.07e-19,59;CL:0000040,5.07e-19,59;CL:0000559,5.07e-19,59;CL:0002009,2.55e-18,61;CL:0000766,1.59e-17,72;CL:0000763,9.02e-11,108;CL:0000049,9.02e-11,108;CL:0002541,3.33e-10,3;CL:0000875,4.58e-10,3;CL:0002396,4.58e-10,3;CL:0002166,1.59e-09,3;CL:0002031,2.04e-09,120;CL:0002087,1.53e-08,115;CL:0000342,4.40e-08,1;CL:0002565,4.40e-08,1;CL:0000738,5.56e-08,136;CL:0000306,1.07e-07,4;CL:0002222,1.07e-07,4;CL:0002224,1.07e-07,4;CL:0002393,3.35e-07,9;CL:0002397,3.35e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;5.80e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.24e-29!80;UBERON:0001474!1.75e-26!86;UBERON:0004765!3.22e-24!101;UBERON:0001434!3.22e-24!101;UBERON:0002390!8.82e-21!102;UBERON:0003061!8.82e-21!102;UBERON:0002193!2.97e-19!112;UBERON:0002405!1.71e-18!115;UBERON:0002204!2.81e-15!167;UBERON:0003081!1.86e-11!216;UBERON:0001737!2.57e-08!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.40e-11;10!UBERON:0000158;3.40e-11;10!UBERON:0003124;3.33e-10;3!UBERON:0000920;3.33e-10;3!UBERON:0002506;7.09e-08;1!UBERON:0001769;7.09e-08;1!UBERON:0010077;1.16e-07;4!UBERON:0005389;1.16e-07;4!UBERON:0000484;1.16e-07;4!UBERON:0000965;1.16e-07;4!UBERON:0001803;1.16e-07;4!UBERON:0001708;1.81e-07;4!UBERON:0008895;1.81e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,1.25e-17,90;UBERON:0002371,1.83e-16,76;UBERON:0001434,1.50e-15,100;UBERON:0001474,4.63e-15,82;UBERON:0002405,5.90e-13,93;UBERON:0002390,3.74e-12,98;UBERON:0003061,3.74e-12,98;UBERON:0002193,9.02e-11,108;UBERON:0000920,3.33e-10,3;UBERON:0002204,3.13e-09,167;UBERON:0002506,4.40e-08,1;UBERON:0001769,4.40e-08,1;UBERON:0005631,4.71e-08,14;UBERON:0000158,4.71e-08,14;UBERON:0010077,1.07e-07,4;UBERON:0005389,1.07e-07,4;UBERON:0000484,1.07e-07,4;UBERON:0002546,1.07e-07,4;UBERON:0000965,1.07e-07,4;UBERON:0001803,1.07e-07,4;UBERON:0003073,1.07e-07,4;UBERON:0005426,1.07e-07,4;UBERON:0001708,2.36e-07,4;UBERON:0008895,2.36e-07,4;UBERON:0003081,4.70e-07,203 | |||
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|short_description=p@chr15:49915758..49915760,+ | |||
}} |
Revision as of 07:18, 11 September 2013
Short description: | p@chr15:49915758..49915760, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:49915758..49915760, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.87e-24 | 48 |
phagocyte | 1.87e-24 | 48 |
classical monocyte | 3.63e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.63e-24 | 42 |
myeloid lineage restricted progenitor cell | 2.33e-19 | 66 |
granulocyte monocyte progenitor cell | 4.96e-19 | 67 |
monopoietic cell | 5.07e-19 | 59 |
monocyte | 5.07e-19 | 59 |
monoblast | 5.07e-19 | 59 |
promonocyte | 5.07e-19 | 59 |
macrophage dendritic cell progenitor | 2.55e-18 | 61 |
myeloid leukocyte | 1.59e-17 | 72 |
myeloid cell | 9.02e-11 | 108 |
common myeloid progenitor | 9.02e-11 | 108 |
chorionic membrane mesenchymal stem cell | 3.33e-10 | 3 |
non-classical monocyte | 4.58e-10 | 3 |
CD14-low, CD16-positive monocyte | 4.58e-10 | 3 |
epithelial cell of Malassez | 1.59e-09 | 3 |
hematopoietic lineage restricted progenitor cell | 2.04e-09 | 120 |
nongranular leukocyte | 1.53e-08 | 115 |
pigment cell (sensu Vertebrata) | 4.40e-08 | 1 |
iris pigment epithelial cell | 4.40e-08 | 1 |
leukocyte | 5.56e-08 | 136 |
crystallin accumulating cell | 1.07e-07 | 4 |
vertebrate lens cell | 1.07e-07 | 4 |
lens epithelial cell | 1.07e-07 | 4 |
intermediate monocyte | 3.35e-07 | 9 |
CD14-positive, CD16-positive monocyte | 3.35e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 1.25e-17 | 90 |
bone marrow | 1.83e-16 | 76 |
skeletal system | 1.50e-15 | 100 |
bone element | 4.63e-15 | 82 |
immune system | 5.90e-13 | 93 |
hematopoietic system | 3.74e-12 | 98 |
blood island | 3.74e-12 | 98 |
hemolymphoid system | 9.02e-11 | 108 |
egg chorion | 3.33e-10 | 3 |
musculoskeletal system | 3.13e-09 | 167 |
iris epithelium | 4.40e-08 | 1 |
iris | 4.40e-08 | 1 |
extraembryonic membrane | 4.71e-08 | 14 |
membranous layer | 4.71e-08 | 14 |
cuboidal epithelium | 1.07e-07 | 4 |
transparent eye structure | 1.07e-07 | 4 |
simple cuboidal epithelium | 1.07e-07 | 4 |
cranial placode | 1.07e-07 | 4 |
lens of camera-type eye | 1.07e-07 | 4 |
epithelium of lens | 1.07e-07 | 4 |
lens placode | 1.07e-07 | 4 |
lens vesicle | 1.07e-07 | 4 |
jaw skeleton | 2.36e-07 | 4 |
splanchnocranium | 2.36e-07 | 4 |
lateral plate mesoderm | 4.70e-07 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.