FFCP PHASE1:Hg19::chr15:32976768..32976779,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6447|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10816|TSSclassifier=N|UniProt=|association_with_transcript=127bp_to_ENST00000475752_5end|coexpression_cluster_id=C3477|description=CAGE_peak_8_at_SCG5_5end|id=chr15:32976768..32976779,+|ontology_enrichment_celltype=CL:0000055!4.91e-12!180;CL:0000057!2.67e-11!75;CL:0002539!7.67e-08!10;CL:0002620!3.28e-07!23|ontology_enrichment_celltype_v019=CL:0002539;4.56e-28;10!CL:0000359;1.62e-10;32!CL:0002570;8.74e-07;8!CL:0000192;9.88e-07;43|ontology_enrichment_celltype_v019_2=CL:0002539,4.22e-28,10;CL:0000359,1.52e-10,32;CL:0000192,1.54e-07,43;CL:0000514,1.54e-07,43;CL:0002570,6.23e-07,8|ontology_enrichment_development_v019=CL:0000514;9.88e-07;43|ontology_enrichment_disease=DOID:2394!1.19e-11!14;DOID:17!2.88e-07!5;DOID:450!2.88e-07!5;DOID:66!2.88e-07!5;DOID:423!2.88e-07!5;DOID:0080000!2.88e-07!5;DOID:11722!2.88e-07!5|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004237!7.67e-08!10;UBERON:0004695!7.67e-08!10;UBERON:0002111!7.67e-08!10;UBERON:0004178!7.67e-08!10;UBERON:0002118!8.37e-08!5;UBERON:0004532!8.37e-08!5;UBERON:0002199!5.47e-07!45;UBERON:0002416!5.47e-07!45|ontology_enrichment_uberon_v019=UBERON:0004237;4.56e-28;10!UBERON:0004695;4.56e-28;10!UBERON:0002111;4.56e-28;10!UBERON:0004178;4.56e-28;10!UBERON:0001135;1.99e-18;15!UBERON:0000947;8.42e-17;21!UBERON:0010191;8.42e-17;21!UBERON:0004573;1.24e-12;33!UBERON:0004571;1.24e-12;33!UBERON:0002385;2.58e-08;31!UBERON:0001015;2.58e-08;31!UBERON:0000383;2.58e-08;31!UBERON:0001282;1.70e-07;1!UBERON:0009842;1.70e-07;1!UBERON:0003704;1.70e-07;1!UBERON:0001171;1.70e-07;1!UBERON:0001172;1.70e-07;1!UBERON:0007195;1.97e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0004237,4.22e-28,10;UBERON:0004695,4.22e-28,10;UBERON:0002111,4.22e-28,10;UBERON:0004178,4.22e-28,10;UBERON:0001135,1.89e-18,15;UBERON:0000947,7.91e-17,21;UBERON:0010191,7.91e-17,21;UBERON:0004573,6.53e-13,33;UBERON:0004571,6.53e-13,33;UBERON:0001637,8.02e-10,42;UBERON:0003509,8.02e-10,42;UBERON:0004572,8.02e-10,42;UBERON:0001282,1.65e-07,1;UBERON:0009842,1.65e-07,1;UBERON:0003704,1.65e-07,1;UBERON:0001171,1.65e-07,1;UBERON:0001172,1.65e-07,1;UBERON:0007195,1.98e-07,1|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,8.0679017574213,6.02694528023977,3.65155045193687,3.41552959153355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0.236482229888585,0,0,0,0,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,3.44263870114369,0,0,0,0,0.98667019366864,0.311211035399766,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0.150238058906597,0.567160915800105,0.179389635688862,0.85422955527427,1.05965950579781,0.300091096084402,0.721367704669072,0,0.37223371266318,0,0.0974370051611986,0.252433774244115,0.184099797284599,0,0.710019185033229,0.503760491138201,0.169560592310488,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0.445893486866185,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,1.690605505112,0,0,0,0,0,0,0,0,1.95441710576241,0,0,1.50719688529793,9.58686804460323,0,0,0,0,0.239624855491583,0,0,0.579125226670317,0.205476322550383,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73675465473144,0.153461973288062,0,0.128139149255701,0,0.321707842287215,0,0.154209693802656,1.06537035187876,0,0,0.348631135379878,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0,0,0,0,0,0,0,0.145016693914229,0.170453254832202,0.0890320356467374,0,0,0,0,2.78907329578371,2.20368642781448,1.3940745403212,0,0,0,1.66791797193528,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0.7133421029625,0,0.211107635297664,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0.994147647766298,0.140669416410513,1.22439575525196,0,0,0,0,0,0.20453736500431,0,0.311039587661807,0,0,0,0,0,5.55684950723184,0,0.185536196323703,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,6.72258129497307,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411125773940253,0.993573058514948,0,0,4.24841747333129,0,0,0,0,0,0,0,0,0,0,0.407992870545287,2.31160471921215,0,0,0,0,0,0,0,0,0,0,0,0,0.720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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6447 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10816 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=127bp_to_ENST00000475752_5end | |||
|coexpression_cluster_id=C3477 | |||
|description=CAGE_peak_8_at_SCG5_5end | |||
|id=chr15:32976768..32976779,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.91e-12!180;CL:0000057!2.67e-11!75;CL:0002539!7.67e-08!10;CL:0002620!3.28e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002539;4.56e-28;10!CL:0000359;1.62e-10;32!CL:0002570;8.74e-07;8!CL:0000192;9.88e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002539,4.22e-28,10;CL:0000359,1.52e-10,32;CL:0000192,1.54e-07,43;CL:0000514,1.54e-07,43;CL:0002570,6.23e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000514;9.88e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!1.19e-11!14;DOID:17!2.88e-07!5;DOID:450!2.88e-07!5;DOID:66!2.88e-07!5;DOID:423!2.88e-07!5;DOID:0080000!2.88e-07!5;DOID:11722!2.88e-07!5 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004237!7.67e-08!10;UBERON:0004695!7.67e-08!10;UBERON:0002111!7.67e-08!10;UBERON:0004178!7.67e-08!10;UBERON:0002118!8.37e-08!5;UBERON:0004532!8.37e-08!5;UBERON:0002199!5.47e-07!45;UBERON:0002416!5.47e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;4.56e-28;10!UBERON:0004695;4.56e-28;10!UBERON:0002111;4.56e-28;10!UBERON:0004178;4.56e-28;10!UBERON:0001135;1.99e-18;15!UBERON:0000947;8.42e-17;21!UBERON:0010191;8.42e-17;21!UBERON:0004573;1.24e-12;33!UBERON:0004571;1.24e-12;33!UBERON:0002385;2.58e-08;31!UBERON:0001015;2.58e-08;31!UBERON:0000383;2.58e-08;31!UBERON:0001282;1.70e-07;1!UBERON:0009842;1.70e-07;1!UBERON:0003704;1.70e-07;1!UBERON:0001171;1.70e-07;1!UBERON:0001172;1.70e-07;1!UBERON:0007195;1.97e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004237,4.22e-28,10;UBERON:0004695,4.22e-28,10;UBERON:0002111,4.22e-28,10;UBERON:0004178,4.22e-28,10;UBERON:0001135,1.89e-18,15;UBERON:0000947,7.91e-17,21;UBERON:0010191,7.91e-17,21;UBERON:0004573,6.53e-13,33;UBERON:0004571,6.53e-13,33;UBERON:0001637,8.02e-10,42;UBERON:0003509,8.02e-10,42;UBERON:0004572,8.02e-10,42;UBERON:0001282,1.65e-07,1;UBERON:0009842,1.65e-07,1;UBERON:0003704,1.65e-07,1;UBERON:0001171,1.65e-07,1;UBERON:0001172,1.65e-07,1;UBERON:0007195,1.98e-07,1 | |||
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|short_description=p8@SCG5 | |||
}} |
Revision as of 06:34, 11 September 2013
Short description: | p8@SCG5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_SCG5_5end |
Coexpression cluster: | C3477_Smooth_Aortic_Mesothelial_cholangiocellular_glioma_pagetoid_mesothelioma |
Association with transcript: | 127bp_to_ENST00000475752_5end |
EntrezGene: | SCG5 |
HGNC: | 10816 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 4.22e-28 | 10 |
vascular associated smooth muscle cell | 1.52e-10 | 32 |
smooth muscle cell | 1.54e-07 | 43 |
smooth muscle myoblast | 1.54e-07 | 43 |
mesenchymal stem cell of adipose | 6.23e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
blood vessel smooth muscle | 4.22e-28 | 10 |
arterial system smooth muscle | 4.22e-28 | 10 |
artery smooth muscle tissue | 4.22e-28 | 10 |
aorta smooth muscle tissue | 4.22e-28 | 10 |
smooth muscle tissue | 1.89e-18 | 15 |
aorta | 7.91e-17 | 21 |
aortic system | 7.91e-17 | 21 |
systemic artery | 6.53e-13 | 33 |
systemic arterial system | 6.53e-13 | 33 |
artery | 8.02e-10 | 42 |
arterial blood vessel | 8.02e-10 | 42 |
arterial system | 8.02e-10 | 42 |
intralobular bile duct | 1.65e-07 | 1 |
acinus | 1.65e-07 | 1 |
intrahepatic bile duct | 1.65e-07 | 1 |
portal lobule | 1.65e-07 | 1 |
hepatic acinus | 1.65e-07 | 1 |
stroma of bone marrow | 1.98e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.