FFCP PHASE1:Hg19::chr14:35872962..35873025,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4792|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7797|TSSclassifier=W|UniProt=G3V286|association_with_transcript=320bp_to_ENST00000557389,uc001wte.3_5end|coexpression_cluster_id=C2|description=CAGE_peak_3_at_NFKBIA_5end|id=chr14:35872962..35873025,-|ontology_enrichment_celltype=CL:0000766!2.01e-29!76;CL:0002057!4.75e-26!42;CL:0000860!7.88e-26!45;CL:0000738!1.85e-24!140;CL:0000557!3.29e-24!71;CL:0002009!7.56e-24!65;CL:0002194!1.09e-22!63;CL:0000576!1.09e-22!63;CL:0000040!1.09e-22!63;CL:0000559!1.09e-22!63;CL:0000839!1.41e-22!70;CL:0002031!2.71e-18!124;CL:0002087!3.26e-18!119;CL:0000037!2.08e-10!172;CL:0000566!2.08e-10!172;CL:0000988!2.36e-10!182;CL:0000763!1.08e-09!112;CL:0000049!1.08e-09!112;CL:0002032!3.19e-09!165;CL:0000837!3.19e-09!165;CL:0000094!7.39e-07!8|ontology_enrichment_celltype_v019=CL:0000860;1.73e-20;33!CL:0002057;1.73e-20;33!CL:0000473;3.93e-18;39!CL:0000234;3.93e-18;39!CL:0000576;4.99e-16;48!CL:0000766;5.62e-15;69!CL:0000094;2.86e-07;8!CL:0002087;6.29e-07;104|ontology_enrichment_celltype_v019_2=CL:0000766,9.73e-32,72;CL:0000473,4.48e-29,48;CL:0000234,4.48e-29,48;CL:0000860,1.13e-27,42;CL:0002057,1.13e-27,42;CL:0000557,2.33e-26,67;CL:0000738,3.49e-26,136;CL:0002009,8.28e-26,61;CL:0002194,1.47e-24,59;CL:0000576,1.47e-24,59;CL:0000040,1.47e-24,59;CL:0000559,1.47e-24,59;CL:0000839,3.42e-24,66;CL:0002087,1.35e-19,115;CL:0002031,1.44e-19,120;CL:0000988,7.80e-13,177;CL:0000037,1.09e-12,168;CL:0000763,7.59e-12,108;CL:0000049,7.59e-12,108;CL:0002032,3.27e-11,161;CL:0000837,3.27e-11,161;CL:0000094,3.29e-07,8;CL:0002393,7.79e-07,9;CL:0002397,7.79e-07,9|ontology_enrichment_development_v019=CL:0002057;3.01e-20;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!2.67e-21!115;UBERON:0002193!4.36e-21!112;UBERON:0002371!2.14e-20!80;UBERON:0002390!2.69e-20!102;UBERON:0003061!2.69e-20!102;UBERON:0003081!8.62e-17!216;UBERON:0001474!1.99e-16!86;UBERON:0004765!2.80e-13!101;UBERON:0001434!2.80e-13!101;UBERON:0000926!2.94e-11!448;UBERON:0004120!2.94e-11!448;UBERON:0006603!2.94e-11!448;UBERON:0002204!6.31e-09!167;UBERON:0000923!3.38e-08!604;UBERON:0005291!3.38e-08!604;UBERON:0006598!3.38e-08!604;UBERON:0002532!3.38e-08!604;UBERON:0002050!3.50e-08!605;UBERON:0005423!3.50e-08!605;UBERON:0000922!2.34e-07!612|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.24e-22,108;UBERON:0002371,5.20e-22,76;UBERON:0002405,6.12e-22,93;UBERON:0002390,1.32e-21,98;UBERON:0003061,1.32e-21,98;UBERON:0001474,8.43e-18,82;UBERON:0004765,6.06e-17,90;UBERON:0003081,1.30e-14,203;UBERON:0001434,1.35e-13,100;UBERON:0002204,3.10e-08,167|phase1_expression=0.363356758541113,1.07050261945492,0.563817616383885,2.00146596706261,0.446961094427288,1.74467704820074,0,0,0.522371256399677,4.42321085702716,28.6098478868695,0.873765488520689,0.527533956456907,1.36142988256051,1.32558950291166,2.6893005858071,4.21886169616784,6.57279081348636,3.90346239032406,0.123121058076788,0.408001382488506,0.313454721478088,0,0.136874425072884,0.627713197974014,3.51501666440576,4.67973359864691,4.01424984699764,100.307890596471,51.0493099469293,80.0399357544113,4.59710612239464,4.819294700452,2.58827807116751,0.0774672005803016,1.70603078984906,5.87200878669694,136.282870498842,142.988191046211,140.623044223872,2.68698569087909,2.59114932815184,2.31818010870768,14.5398238779565,15.4929136912412,16.4957161607715,81.815020990801,72.3655482918413,55.7471467611186,68.4707893726718,53.0252662515238,50.6071971961572,103.423704220986,92.3043097524871,100.215600079813,54.4020361278128,52.6708869611642,48.7649961245834,95.8042583120925,60.0137280632295,97.8185802472533,13.5239033076554,13.9624560335142,21.3112375266347,102.44386123589,73.192693985157,96.5374485943141,32.1598291528631,38.5897359630949,45.3924685433694,69.015543300204,69.9727508376373,80.3814464099846,32.9558246646629,66.3325415890936,37.5288975459993,24.3753129587894,35.89227738912,26.037545044927,11.4005097496499,11.3382506003481,7.30656615058536,0,0,1.77901850772711,2.56038133539904,0.800791974072025,1.14950487990897,0,0,10.2458334439701,19.378827249241,17.2022952656353,26.4342657158052,38.675090845726,0.526768169550154,11.2124568964885,27.1177426296924,13.9809019319666,0.334372990781356,3.91106719960308,1.89379122293893,1.94826728407911,1.11410456885174,2.06224135232386,1.77227115666897,1.89562704635511,1.79327847615945,1.8208308658383,0.986627427622057,0.829050053357545,0.869409257205157,1.33457906845854,0.535081656179426,1.04535523804977,0,2.29932296161153,0.68725489096526,0.506039384039006,0.318565414324097,1.95325036156926,0.950452044448374,1.6563263098555,1.53583933385302,1.24930726552346,0.947109008176067,0.821127996921047,13.9108652825065,28.0812205572683,14.7720891960455,0,2.01210257911091,0.895037932904712,0,0,1.30361867064741,0,2.91980922181582,1.70162670895322,1.10864698731282,1.22968699970376,2.816050123200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09,7.28707624615851,4.56579360254748,0.863710364874486,2.8665101273223,1.28657779517981,0.158013611732727,0.116241425368125,0.347716544605159,0,5.38762026823896,8.02376842341565,22.1203091780509,0.430227358820278,2.36664001461131,1.19298766662821,16.9354820076372,20.8487250375086,7.13474687027936,1.91107787795487,1.78968690876468,0.490751168076215,5.9739783241312,5.17943069750316,2.77189578511867,2.3196288626764,2.4285549652957,1.40363678077263,0.994753875806841,0.118920090777569,1.01651473835064,0.329821550236287,4.52888530700021,8.87502818241363,7.21246549663059,0,1.22574160876953,0,4.71140321075869,2.37637120261669,1.2679671827502,0.339854229375634,4.60521198101283,5.54337836572764,0.89947040332436,22.4977962643129,3.17605384544123,1.36410323371586,5.84269110597214,1.37618785021362,2.00675416412032,0,0.679914901909147,0.872701380680755,2.1161073620616,2.23197010900051,0.924351257262837,0,0,0.218531143927391,3.67425652933167,0.407955318967927,0,0.643264296743914,0.250707539292375,3.03114792872958,0.535928260312357,0.829169439458779,1.34462894620464,1.49263787330687,1.1903221573187,1.42095601639213,2.54506328613017,0.560659312903067,2.5458863311266,1.81905470062397,1.74173398317569,1.71116650542641,1.21233695426258,4.08816570738255,1.66330178273007,7.08208436915478,6.61709544441836,0,1.07790242527904,2.34640942403454,1.1001729976458,1.22068853494722,5.3260541934841,3.62292828463847,2.24397944612263|short_description=p3@NFKBIA}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4792 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7797 | |||
|TSSclassifier=W | |||
|UniProt=G3V286 | |||
|association_with_transcript=320bp_to_ENST00000557389,uc001wte.3_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_NFKBIA_5end | |||
|id=chr14:35872962..35873025,- | |||
|ontology_enrichment_celltype=CL:0000766!2.01e-29!76;CL:0002057!4.75e-26!42;CL:0000860!7.88e-26!45;CL:0000738!1.85e-24!140;CL:0000557!3.29e-24!71;CL:0002009!7.56e-24!65;CL:0002194!1.09e-22!63;CL:0000576!1.09e-22!63;CL:0000040!1.09e-22!63;CL:0000559!1.09e-22!63;CL:0000839!1.41e-22!70;CL:0002031!2.71e-18!124;CL:0002087!3.26e-18!119;CL:0000037!2.08e-10!172;CL:0000566!2.08e-10!172;CL:0000988!2.36e-10!182;CL:0000763!1.08e-09!112;CL:0000049!1.08e-09!112;CL:0002032!3.19e-09!165;CL:0000837!3.19e-09!165;CL:0000094!7.39e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.73e-20;33!CL:0002057;1.73e-20;33!CL:0000473;3.93e-18;39!CL:0000234;3.93e-18;39!CL:0000576;4.99e-16;48!CL:0000766;5.62e-15;69!CL:0000094;2.86e-07;8!CL:0002087;6.29e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,9.73e-32,72;CL:0000473,4.48e-29,48;CL:0000234,4.48e-29,48;CL:0000860,1.13e-27,42;CL:0002057,1.13e-27,42;CL:0000557,2.33e-26,67;CL:0000738,3.49e-26,136;CL:0002009,8.28e-26,61;CL:0002194,1.47e-24,59;CL:0000576,1.47e-24,59;CL:0000040,1.47e-24,59;CL:0000559,1.47e-24,59;CL:0000839,3.42e-24,66;CL:0002087,1.35e-19,115;CL:0002031,1.44e-19,120;CL:0000988,7.80e-13,177;CL:0000037,1.09e-12,168;CL:0000763,7.59e-12,108;CL:0000049,7.59e-12,108;CL:0002032,3.27e-11,161;CL:0000837,3.27e-11,161;CL:0000094,3.29e-07,8;CL:0002393,7.79e-07,9;CL:0002397,7.79e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;3.01e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!2.67e-21!115;UBERON:0002193!4.36e-21!112;UBERON:0002371!2.14e-20!80;UBERON:0002390!2.69e-20!102;UBERON:0003061!2.69e-20!102;UBERON:0003081!8.62e-17!216;UBERON:0001474!1.99e-16!86;UBERON:0004765!2.80e-13!101;UBERON:0001434!2.80e-13!101;UBERON:0000926!2.94e-11!448;UBERON:0004120!2.94e-11!448;UBERON:0006603!2.94e-11!448;UBERON:0002204!6.31e-09!167;UBERON:0000923!3.38e-08!604;UBERON:0005291!3.38e-08!604;UBERON:0006598!3.38e-08!604;UBERON:0002532!3.38e-08!604;UBERON:0002050!3.50e-08!605;UBERON:0005423!3.50e-08!605;UBERON:0000922!2.34e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.24e-22,108;UBERON:0002371,5.20e-22,76;UBERON:0002405,6.12e-22,93;UBERON:0002390,1.32e-21,98;UBERON:0003061,1.32e-21,98;UBERON:0001474,8.43e-18,82;UBERON:0004765,6.06e-17,90;UBERON:0003081,1.30e-14,203;UBERON:0001434,1.35e-13,100;UBERON:0002204,3.10e-08,167 | |||
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| |||
|short_description=p3@NFKBIA | |||
}} |
Revision as of 04:25, 11 September 2013
Short description: | p3@NFKBIA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_NFKBIA_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 320bp_to_ENST00000557389, uc001wte.3_5end |
EntrezGene: | NFKBIA |
HGNC: | 7797 |
UniProt: | G3V286 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 9.73e-32 | 72 |
defensive cell | 4.48e-29 | 48 |
phagocyte | 4.48e-29 | 48 |
classical monocyte | 1.13e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.13e-27 | 42 |
granulocyte monocyte progenitor cell | 2.33e-26 | 67 |
leukocyte | 3.49e-26 | 136 |
macrophage dendritic cell progenitor | 8.28e-26 | 61 |
monopoietic cell | 1.47e-24 | 59 |
monocyte | 1.47e-24 | 59 |
monoblast | 1.47e-24 | 59 |
promonocyte | 1.47e-24 | 59 |
myeloid lineage restricted progenitor cell | 3.42e-24 | 66 |
nongranular leukocyte | 1.35e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 1.44e-19 | 120 |
hematopoietic cell | 7.80e-13 | 177 |
hematopoietic stem cell | 1.09e-12 | 168 |
myeloid cell | 7.59e-12 | 108 |
common myeloid progenitor | 7.59e-12 | 108 |
hematopoietic oligopotent progenitor cell | 3.27e-11 | 161 |
hematopoietic multipotent progenitor cell | 3.27e-11 | 161 |
granulocyte | 3.29e-07 | 8 |
intermediate monocyte | 7.79e-07 | 9 |
CD14-positive, CD16-positive monocyte | 7.79e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.24e-22 | 108 |
bone marrow | 5.20e-22 | 76 |
immune system | 6.12e-22 | 93 |
hematopoietic system | 1.32e-21 | 98 |
blood island | 1.32e-21 | 98 |
bone element | 8.43e-18 | 82 |
skeletal element | 6.06e-17 | 90 |
lateral plate mesoderm | 1.30e-14 | 203 |
skeletal system | 1.35e-13 | 100 |
musculoskeletal system | 3.10e-08 | 167 |
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