FFCP PHASE1:Hg19::chr13:32605767..32605790,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10129|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20367|TSSclassifier=S|UniProt=|association_with_transcript=75bp_to_ENST00000463566_5end|description=CAGE_peak_2_at_FRY_5end|id=chr13:32605767..32605790,+|ontology_enrichment_celltype=CL:0000766!1.98e-16!76;CL:0002057!3.77e-16!42;CL:0000763!2.21e-15!112;CL:0000049!2.21e-15!112;CL:0000860!3.89e-14!45;CL:0000839!4.24e-13!70;CL:0000557!3.75e-12!71;CL:0002194!1.87e-10!63;CL:0000576!1.87e-10!63;CL:0000040!1.87e-10!63;CL:0000559!1.87e-10!63;CL:0002009!1.59e-09!65|ontology_enrichment_celltype_v019=CL:0000860;2.48e-18;33!CL:0002057;2.48e-18;33!CL:0000473;1.26e-11;39!CL:0000234;1.26e-11;39!CL:0000576;6.59e-11;48!CL:0000766;1.19e-09;69!CL:0000763;9.83e-08;100|ontology_enrichment_celltype_v019_2=CL:0000766,2.09e-18,72;CL:0000860,2.48e-17,42;CL:0002057,2.48e-17,42;CL:0000763,3.95e-17,108;CL:0000049,3.95e-17,108;CL:0000839,1.03e-14,66;CL:0000557,6.31e-14,67;CL:0000473,1.58e-13,48;CL:0000234,1.58e-13,48;CL:0002194,2.53e-11,59;CL:0000576,2.53e-11,59;CL:0000040,2.53e-11,59;CL:0000559,2.53e-11,59;CL:0002009,1.52e-10,61|ontology_enrichment_development_v019=CL:0002057;6.65e-13;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.82e-34!115;UBERON:0002390!4.03e-15!102;UBERON:0003061!4.03e-15!102;UBERON:0001049!1.53e-14!57;UBERON:0005068!1.53e-14!57;UBERON:0006241!1.53e-14!57;UBERON:0007135!1.53e-14!57;UBERON:0002780!1.81e-13!41;UBERON:0001890!1.81e-13!41;UBERON:0006240!1.81e-13!41;UBERON:0003080!1.01e-12!42;UBERON:0002193!1.46e-12!112;UBERON:0002616!1.40e-11!59;UBERON:0003075!6.02e-11!86;UBERON:0007284!6.02e-11!86;UBERON:0002371!1.22e-10!80;UBERON:0001017!1.63e-10!82;UBERON:0002020!1.79e-10!34;UBERON:0003528!1.79e-10!34;UBERON:0002619!2.27e-10!22;UBERON:0001893!2.34e-10!34;UBERON:0000955!3.03e-10!69;UBERON:0006238!3.03e-10!69;UBERON:0005743!3.38e-10!86;UBERON:0000073!5.31e-10!94;UBERON:0001016!5.31e-10!94;UBERON:0001869!6.49e-10!32;UBERON:0002791!7.24e-10!33;UBERON:0001474!1.61e-09!86;UBERON:0001950!2.16e-09!20;UBERON:0002346!2.16e-09!90;UBERON:0000956!6.65e-09!25;UBERON:0000203!6.65e-09!25;UBERON:0003056!6.98e-09!61;UBERON:0004765!1.21e-07!101;UBERON:0001434!1.21e-07!101;UBERON:0000178!1.33e-07!15;UBERON:0000179!1.33e-07!15;UBERON:0000463!1.33e-07!15|ontology_enrichment_uberon_v019=UBERON:0002619;2.18e-13;22!UBERON:0002780;2.37e-12;41!UBERON:0001890;2.37e-12;41!UBERON:0001950;4.11e-12;20!UBERON:0000073;6.24e-11;53!UBERON:0002616;6.24e-11;53!UBERON:0000956;6.33e-11;25!UBERON:0000203;6.33e-11;25!UBERON:0001893;1.58e-10;34!UBERON:0001869;1.99e-10;32!UBERON:0003528;2.13e-10;34!UBERON:0002020;2.13e-10;34!UBERON:0002791;6.53e-10;32!UBERON:0000178;2.34e-09;15!UBERON:0000179;2.34e-09;15!UBERON:0000463;2.34e-09;15!UBERON:0007023;6.14e-09;114!UBERON:0000955;1.27e-07;68!UBERON:0001017;6.83e-07;75|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.32e-35,114;UBERON:0001049,1.55e-19,56;UBERON:0005068,1.55e-19,56;UBERON:0006241,1.55e-19,56;UBERON:0007135,1.55e-19,56;UBERON:0000073,9.90e-18,53;UBERON:0002616,9.90e-18,53;UBERON:0002390,2.78e-17,98;UBERON:0003061,2.78e-17,98;UBERON:0002780,1.04e-16,41;UBERON:0001890,1.04e-16,41;UBERON:0003080,1.04e-16,41;UBERON:0006240,1.04e-16,41;UBERON:0001017,5.23e-15,81;UBERON:0003075,1.53e-14,82;UBERON:0007284,1.53e-14,82;UBERON:0000955,1.54e-14,68;UBERON:0006238,1.54e-14,68;UBERON:0002193,9.32e-14,108;UBERON:0002619,1.17e-13,22;UBERON:0001016,3.70e-13,89;UBERON:0002346,4.67e-13,86;UBERON:0003528,9.42e-13,34;UBERON:0002020,9.42e-13,34;UBERON:0001893,1.33e-12,34;UBERON:0001950,2.37e-12,20;UBERON:0001869,5.20e-12,32;UBERON:0002791,1.33e-11,32;UBERON:0003056,1.70e-11,61;UBERON:0002371,2.96e-11,76;UBERON:0000956,3.73e-11,25;UBERON:0000203,3.73e-11,25;UBERON:0001474,6.86e-10,82;UBERON:0000178,1.23e-09,15;UBERON:0000179,1.23e-09,15;UBERON:0000463,1.23e-09,15;UBERON:0000923,1.72e-09,560;UBERON:0010316,1.72e-09,560;UBERON:0005291,1.72e-09,560;UBERON:0006598,1.72e-09,560;UBERON:0010317,1.72e-09,560;UBERON:0002532,1.72e-09,560;UBERON:0002050,2.02e-09,564;UBERON:0010371,1.64e-08,104;UBERON:0005423,2.50e-08,581;UBERON:0002405,4.39e-08,93;UBERON:0000922,7.45e-08,592;UBERON:0004765,8.38e-08,90;UBERON:0003081,3.52e-07,203|phase1_expression=0.363356758541113,0.214100523890983,2.25527046553554,5.00366491765652,4.02264984984559,4.36169262050184,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0.204000691244253,0,0.286235987131057,0,0.125542639594803,0.0764134057479513,0.164201178899891,0,7.86728553697808,0.767658796194425,2.94150634300544,0,0,0,0.697204805222715,0.284338464974843,3.22960483268332,2.76997704265939,4.21143339687298,1.73608696572681,0.223915474239924,0,0.257575567634187,15.1214168330747,5.66813915533214,11.4014508758274,5.34586784883075,4.93401465626191,3.40677007984614,3.45230870786581,3.33008918487831,3.54723344832878,4.82643953031266,1.29096936716765,1.35426486594342,6.21199720490596,2.45615535052061,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10129 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20367 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=75bp_to_ENST00000463566_5end | |||
|description=CAGE_peak_2_at_FRY_5end | |||
|id=chr13:32605767..32605790,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.98e-16!76;CL:0002057!3.77e-16!42;CL:0000763!2.21e-15!112;CL:0000049!2.21e-15!112;CL:0000860!3.89e-14!45;CL:0000839!4.24e-13!70;CL:0000557!3.75e-12!71;CL:0002194!1.87e-10!63;CL:0000576!1.87e-10!63;CL:0000040!1.87e-10!63;CL:0000559!1.87e-10!63;CL:0002009!1.59e-09!65 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.48e-18;33!CL:0002057;2.48e-18;33!CL:0000473;1.26e-11;39!CL:0000234;1.26e-11;39!CL:0000576;6.59e-11;48!CL:0000766;1.19e-09;69!CL:0000763;9.83e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.09e-18,72;CL:0000860,2.48e-17,42;CL:0002057,2.48e-17,42;CL:0000763,3.95e-17,108;CL:0000049,3.95e-17,108;CL:0000839,1.03e-14,66;CL:0000557,6.31e-14,67;CL:0000473,1.58e-13,48;CL:0000234,1.58e-13,48;CL:0002194,2.53e-11,59;CL:0000576,2.53e-11,59;CL:0000040,2.53e-11,59;CL:0000559,2.53e-11,59;CL:0002009,1.52e-10,61 | |||
|ontology_enrichment_development_v019=CL:0002057;6.65e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.82e-34!115;UBERON:0002390!4.03e-15!102;UBERON:0003061!4.03e-15!102;UBERON:0001049!1.53e-14!57;UBERON:0005068!1.53e-14!57;UBERON:0006241!1.53e-14!57;UBERON:0007135!1.53e-14!57;UBERON:0002780!1.81e-13!41;UBERON:0001890!1.81e-13!41;UBERON:0006240!1.81e-13!41;UBERON:0003080!1.01e-12!42;UBERON:0002193!1.46e-12!112;UBERON:0002616!1.40e-11!59;UBERON:0003075!6.02e-11!86;UBERON:0007284!6.02e-11!86;UBERON:0002371!1.22e-10!80;UBERON:0001017!1.63e-10!82;UBERON:0002020!1.79e-10!34;UBERON:0003528!1.79e-10!34;UBERON:0002619!2.27e-10!22;UBERON:0001893!2.34e-10!34;UBERON:0000955!3.03e-10!69;UBERON:0006238!3.03e-10!69;UBERON:0005743!3.38e-10!86;UBERON:0000073!5.31e-10!94;UBERON:0001016!5.31e-10!94;UBERON:0001869!6.49e-10!32;UBERON:0002791!7.24e-10!33;UBERON:0001474!1.61e-09!86;UBERON:0001950!2.16e-09!20;UBERON:0002346!2.16e-09!90;UBERON:0000956!6.65e-09!25;UBERON:0000203!6.65e-09!25;UBERON:0003056!6.98e-09!61;UBERON:0004765!1.21e-07!101;UBERON:0001434!1.21e-07!101;UBERON:0000178!1.33e-07!15;UBERON:0000179!1.33e-07!15;UBERON:0000463!1.33e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.18e-13;22!UBERON:0002780;2.37e-12;41!UBERON:0001890;2.37e-12;41!UBERON:0001950;4.11e-12;20!UBERON:0000073;6.24e-11;53!UBERON:0002616;6.24e-11;53!UBERON:0000956;6.33e-11;25!UBERON:0000203;6.33e-11;25!UBERON:0001893;1.58e-10;34!UBERON:0001869;1.99e-10;32!UBERON:0003528;2.13e-10;34!UBERON:0002020;2.13e-10;34!UBERON:0002791;6.53e-10;32!UBERON:0000178;2.34e-09;15!UBERON:0000179;2.34e-09;15!UBERON:0000463;2.34e-09;15!UBERON:0007023;6.14e-09;114!UBERON:0000955;1.27e-07;68!UBERON:0001017;6.83e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.32e-35,114;UBERON:0001049,1.55e-19,56;UBERON:0005068,1.55e-19,56;UBERON:0006241,1.55e-19,56;UBERON:0007135,1.55e-19,56;UBERON:0000073,9.90e-18,53;UBERON:0002616,9.90e-18,53;UBERON:0002390,2.78e-17,98;UBERON:0003061,2.78e-17,98;UBERON:0002780,1.04e-16,41;UBERON:0001890,1.04e-16,41;UBERON:0003080,1.04e-16,41;UBERON:0006240,1.04e-16,41;UBERON:0001017,5.23e-15,81;UBERON:0003075,1.53e-14,82;UBERON:0007284,1.53e-14,82;UBERON:0000955,1.54e-14,68;UBERON:0006238,1.54e-14,68;UBERON:0002193,9.32e-14,108;UBERON:0002619,1.17e-13,22;UBERON:0001016,3.70e-13,89;UBERON:0002346,4.67e-13,86;UBERON:0003528,9.42e-13,34;UBERON:0002020,9.42e-13,34;UBERON:0001893,1.33e-12,34;UBERON:0001950,2.37e-12,20;UBERON:0001869,5.20e-12,32;UBERON:0002791,1.33e-11,32;UBERON:0003056,1.70e-11,61;UBERON:0002371,2.96e-11,76;UBERON:0000956,3.73e-11,25;UBERON:0000203,3.73e-11,25;UBERON:0001474,6.86e-10,82;UBERON:0000178,1.23e-09,15;UBERON:0000179,1.23e-09,15;UBERON:0000463,1.23e-09,15;UBERON:0000923,1.72e-09,560;UBERON:0010316,1.72e-09,560;UBERON:0005291,1.72e-09,560;UBERON:0006598,1.72e-09,560;UBERON:0010317,1.72e-09,560;UBERON:0002532,1.72e-09,560;UBERON:0002050,2.02e-09,564;UBERON:0010371,1.64e-08,104;UBERON:0005423,2.50e-08,581;UBERON:0002405,4.39e-08,93;UBERON:0000922,7.45e-08,592;UBERON:0004765,8.38e-08,90;UBERON:0003081,3.52e-07,203 | |||
|phase1_expression=0.363356758541113,0.214100523890983,2.25527046553554,5.00366491765652,4.02264984984559,4.36169262050184,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0.204000691244253,0,0.286235987131057,0,0.125542639594803,0.0764134057479513,0.164201178899891,0,7.86728553697808,0.767658796194425,2.94150634300544,0,0,0,0.697204805222715,0.284338464974843,3.22960483268332,2.76997704265939,4.21143339687298,1.73608696572681,0.223915474239924,0,0.257575567634187,15.1214168330747,5.66813915533214,11.4014508758274,5.34586784883075,4.93401465626191,3.40677007984614,3.45230870786581,3.33008918487831,3.54723344832878,4.82643953031266,1.29096936716765,1.35426486594342,6.21199720490596,2.45615535052061,4.49446968890169,4.59125838556354,2.24650318953266,3.83602275479425,6.59702600373432,5.38551875578406,5.11469700639233,2.32167390902867,2.26954089876456,3.73693349397345,3.51748131359441,2.60741459210101,2.38907729175628,3.63239701580021,2.57794345191295,4.74693581161327,0.845021145247767,0.637812899895131,0.628975936525128,4.4931452458598,4.05477610672067,4.66104201421532,0.570025487482497,0.59675003159727,1.82664153764634,0,0,0,0.853460445133014,0,0,0,0,0,0.587237189370939,0.764546456250458,5.28685314316103,2.80254281490768,3.16060901730092,0,0,0.205601498999509,0,0,0,0,1.11410456885174,0,0,0,0.640456598628376,1.30059347559878,0.328875809207352,0.276350017785848,0,0,0,0,0,0,0,0.253019692019503,0.318565414324097,0,0,0.602300476311091,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0.511450247374121,0.722878304769133,1.00267582127178,0.434539556882471,2.3858578411533,4.86634870302636,0.0945348171640679,0.221729397462564,0.175669571386252,2.16115474571226,0,0,0.324547393654683,0,0.26591592103773,0.476981248610684,0,0,0.596287222100115,0,0,0,0.419499436209906,0,0,0,0.35576626268671,0.33472061276467,0,0,0,0,0,0.446498641420399,0.44905874525234,0.337834441449967,0,0,0.183201743930407,10.5424333948851,11.6334079244498,0,10.4364109856017,1.01304409331664,0.794455084879313,0,0.354668382198357,2.24271040056923,0,0,0.622422070799533,0.134710672069688,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0.413303124703062,0,1.7308685049499,0,0,0,0,0,0.438977620880838,0.30648779579902,0.45071417671979,0.113432183160021,0.358779271377724,1.2813443329114,0.635795703478686,0,0.206105058476878,2.57640540045629,2.60563598864226,0,0.194874010322397,0,0.644349290496095,1.61646056818812,0,0,0.847802961552438,0,0,0,0.243947412259191,0.265059536642971,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0.38474715694639,0,0,0.4115740113314,0,0,0,0.590789906681404,0,0,0.514703430895577,0,0,0,0,0,1.03993478527958,1.44331342025273,0.34779121492523,2.93521735589554,0,0,0,0,0,0,0.234004265139238,0.445893486866185,0,0,0,0,0,0,11.3312544716067,9.94947304349454,4.56121854189699,4.17947864909188,3.66103056936502,0,0,0,0,0,0,0,0.112131084345361,0.87192013766656,0.07333828582095,10.9880958394111,0,0,13.2969058292435,3.12022310734098,0,0,0,1.42977993658148,1.08524321078289,0.823240336780769,0,0.355391948742546,1.58390374586686,0.301439377059586,0.871533458600294,0.499864955910285,0,0,0,0.239624855491583,0,0,0.434343920002738,0,0,0,0.394061520403854,0,0.256686072559497,0,2.60279707715243,0,0.335032530668698,1.27587750330633,32.956309053676,20.9413021442817,28.5946704270864,0.24538298343828,0.500170521059677,0,0.623912584592421,0,0,0.35142424497814,1.20378439891088,0,2.0694614258501,0,0.184369168541703,1.56390506042549,0,0,1.44737618286021,2.37285620900479,1.81436848265855,0,0,0,0.744323423456331,1.84154367945675,0,1.40953064181271,7.16390148693385,1.76939313257968,0,0.154209693802656,0,0,0,0.116210378459959,0,0,0,4.59257792658427,3.27764102412091,9.57208229203796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41185864310528,1.3071772551245,0,0.656029291399411,0,2.16386124460217,0,0.082509499920588,0,0,3.21367859688319,0.193341436584244,0,0,0,0.107420244868274,0,0,1.4245125703478,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0.143124886741991,0,0.316379424718726,2.09693213316207,0,0,0,0,6.83515338816596,2.19629623788844,1.17812402345686,0.404364963146632,0,0,0.975267478179181,0,1.05650146756755,10.2374933555989,11.1710291243433,0,0,0,0,0,0,1.62328301570163,0.92947049429925,2.25356482025793,1.14729081763241,2.16147890228867,1.07001315444375,3.19284957663538,0.844430541190656,0.987884678879706,0,0,0,0,0,1.03558180854457,0,0,0,0,4.56702848308952,5.35246044999663,6.26611905891579,7.38518503919146,5.34770955012053,3.8908398671563,7.02040868409549,11.1037524681198,0,0.962479855263359,1.47024129588619,0,0,0.213425530045242,0,0.997896857164083,0.5745161103971,2.75175657541048,0.324621940274555,3.08876895924805,0,2.82023812391442,0,0,7.06587530456278,12.713381553036,27.2541592121809,2.06103206853459,11.6751490437214,8.72336820780422,7.8419096604597,0.781552381608161,0,0,0.540911356951966,0,0,0,2.05111450980652,0,0.222886768554957,0,0.23874448473769,0,0,4.97073823883149,4.22008249231538,0,0,0.63337622438398,11.7556313068131,4.97311047956066,0,0.715880777515084,0,1.24415835064723,0,0,8.18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| |||
|short_description=p2@FRY | |||
}} |
Revision as of 02:02, 11 September 2013
Short description: | p2@FRY |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_FRY_5end |
Coexpression cluster: | NA |
Association with transcript: | 75bp_to_ENST00000463566_5end |
EntrezGene: | FRY |
HGNC: | 20367 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.09e-18 | 72 |
classical monocyte | 2.48e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.48e-17 | 42 |
myeloid cell | 3.95e-17 | 108 |
common myeloid progenitor | 3.95e-17 | 108 |
myeloid lineage restricted progenitor cell | 1.03e-14 | 66 |
granulocyte monocyte progenitor cell | 6.31e-14 | 67 |
defensive cell | 1.58e-13 | 48 |
phagocyte | 1.58e-13 | 48 |
monopoietic cell | 2.53e-11 | 59 |
monocyte | 2.53e-11 | 59 |
monoblast | 2.53e-11 | 59 |
promonocyte | 2.53e-11 | 59 |
macrophage dendritic cell progenitor | 1.52e-10 | 61 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.