FFCP PHASE1:Hg19::chr12:6937349..6937370,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10536|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19318|TSSclassifier=W|UniProt=E7ESD0|association_with_transcript=145bp_to_ENST00000451242_5end|coexpression_cluster_id=C3323|description=CAGE_peak_3_at_LEPREL2_5end|id=chr12:6937349..6937370,+|ontology_enrichment_celltype=CL:0000055!1.85e-39!180;CL:0000057!2.13e-18!75;CL:0000183!1.58e-14!59;CL:0000680!3.75e-14!57;CL:0000056!3.75e-14!57;CL:0000355!3.75e-14!57;CL:0000187!1.86e-13!54;CL:0000393!1.07e-12!60;CL:0000211!1.07e-12!60;CL:0002620!4.83e-11!23;CL:0000192!1.47e-10!42;CL:0000514!1.47e-10!42;CL:0000222!1.13e-08!119;CL:0002321!1.28e-07!248;CL:0000220!2.31e-07!246;CL:0000499!5.86e-07!27;CL:0000359!7.96e-07!32|ontology_enrichment_celltype_v019=CL:0002620;3.86e-12;23!CL:0000187;2.64e-09;55!CL:0000057;1.70e-08;73!CL:0000192;1.98e-08;43!CL:0000393;4.28e-08;61!CL:0000211;4.28e-08;61!CL:0000134;6.01e-08;55!CL:0000723;1.97e-07;61!CL:0002320;2.22e-07;188!CL:0002570;3.17e-07;8!CL:0000048;5.35e-07;58!CL:0000327;5.69e-07;15|ontology_enrichment_celltype_v019_2=CL:0000057,1.51e-22,76;CL:0000680,9.00e-16,58;CL:0000056,9.00e-16,58;CL:0000355,9.00e-16,58;CL:0000187,6.41e-15,55;CL:0000393,1.37e-13,61;CL:0000211,1.37e-13,61;CL:0002620,1.11e-12,23;CL:0000192,1.88e-11,43;CL:0000514,1.88e-11,43;CL:0000048,9.27e-08,427;CL:0000327,2.16e-07,15;CL:0000034,2.44e-07,441;CL:0002570,3.23e-07,8;CL:0000723,4.70e-07,433;CL:0000499,8.75e-07,28|ontology_enrichment_development_v019=CL:0000355;2.00e-09;58!CL:0000514;1.98e-08;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;6.33e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,4.08e-07,14|ontology_enrichment_uberon=UBERON:0000914!1.01e-14!83;UBERON:0002329!1.01e-14!83;UBERON:0003077!1.01e-14!83;UBERON:0003059!1.01e-14!83;UBERON:0007282!1.01e-14!83;UBERON:0009618!1.01e-14!83;UBERON:0007285!1.01e-14!83;UBERON:0000486!2.65e-14!82;UBERON:0001134!1.20e-13!61;UBERON:0002036!1.20e-13!61;UBERON:0003082!1.20e-13!61;UBERON:0004290!2.70e-13!70;UBERON:0002385!2.71e-13!63;UBERON:0001015!2.71e-13!63;UBERON:0000383!2.71e-13!63;UBERON:0005256!3.51e-13!143;UBERON:0000475!2.78e-10!365;UBERON:0000119!3.59e-10!312;UBERON:0004872!1.69e-09!84;UBERON:0000483!1.72e-09!309;UBERON:0003914!2.09e-09!118;UBERON:0002049!8.30e-09!79;UBERON:0007798!8.30e-09!79;UBERON:0000481!1.30e-08!347;UBERON:0000490!5.08e-08!138;UBERON:0002100!1.28e-07!216;UBERON:0000468!1.58e-07!659;UBERON:0001981!3.16e-07!60;UBERON:0007500!3.16e-07!60;UBERON:0004537!3.16e-07!60;UBERON:0006965!3.16e-07!60;UBERON:0001637!3.20e-07!42;UBERON:0003509!3.20e-07!42;UBERON:0004572!3.20e-07!42;UBERON:0000055!7.07e-07!69;UBERON:0003104!7.15e-07!238;UBERON:0009142!7.15e-07!238|ontology_enrichment_uberon_v019=UBERON:0002385;7.48e-07;31!UBERON:0001015;7.48e-07;31!UBERON:0000383;7.48e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.05e-16,83;UBERON:0007503,1.38e-15,78;UBERON:0001134,2.97e-15,62;UBERON:0002036,2.97e-15,62;UBERON:0003082,2.97e-15,62;UBERON:0002329,3.42e-15,71;UBERON:0003059,3.42e-15,71;UBERON:0007282,3.42e-15,71;UBERON:0004290,3.42e-15,71;UBERON:0009618,3.42e-15,71;UBERON:0007524,3.48e-15,73;UBERON:0003077,1.05e-14,72;UBERON:0007285,1.05e-14,72;UBERON:0002385,3.36e-14,64;UBERON:0001015,3.36e-14,64;UBERON:0000383,3.36e-14,64;UBERON:0003104,1.18e-13,160;UBERON:0009142,1.18e-13,160;UBERON:0005256,2.80e-09,122;UBERON:0004872,4.37e-07,83|phase1_expression=0.54503513781167,0.428201047781966,0.845726424575827,1.0007329835313,0,0.872338524100369,0,1.26343974685366,0.783556884599516,3.68600904752263,0.697801167972428,2.62129646556207,2.11013582582763,1.60896258848061,2.31978163009541,1.34465029290355,1.20538905604795,2.19093027116212,1.46379839637152,4.55547914884115,3.67201244239655,0.940364164434263,0.85870796139317,1.77936752594749,1.12988375635323,0,0,0,0,0,0,0,1.50602959389125,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,2.01210257911091,0.383587685530591,9.03597880961416,4.51204119572301,1.88300474649071,12.7245751528176,0.973269740605272,2.07976597760949,1.77383517970051,1.31752178539689,0.458426764241994,1.82147644146271,1.48313777113772,0,0,0,0,0,0,0.79504962946682,0,0.347140501607594,0.56530794192401,0.838998872419812,1.10047216776027,1.25396979922086,0.516833518338658,0.35576626268671,0.33472061276467,0.805658634218294,0,0,0.735326160691737,0.81014194788176,0.892997282840798,1.79623498100936,1.0135033243499,0,0,0.549605231791222,0,0,2.18047026071267,2.48485975847659,2.27934920996244,2.1185468930115,10.0392817262085,4.61068896857864,1.12135520028461,1.06748995729705,2.22000793575444,1.8672662123986,1.0776853765575,1.14423332179421,2.11900398702904,0.576175924479999,1.87457145467037,1.87296046098192,0.570471821544449,1.49448680551801,3.99277295388801,3.72307772046703,3.65172097425846,1.63323337003915,1.35117749042945,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10536 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19318 | |||
|TSSclassifier=W | |||
|UniProt=E7ESD0 | |||
|association_with_transcript=145bp_to_ENST00000451242_5end | |||
|coexpression_cluster_id=C3323 | |||
|description=CAGE_peak_3_at_LEPREL2_5end | |||
|id=chr12:6937349..6937370,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.85e-39!180;CL:0000057!2.13e-18!75;CL:0000183!1.58e-14!59;CL:0000680!3.75e-14!57;CL:0000056!3.75e-14!57;CL:0000355!3.75e-14!57;CL:0000187!1.86e-13!54;CL:0000393!1.07e-12!60;CL:0000211!1.07e-12!60;CL:0002620!4.83e-11!23;CL:0000192!1.47e-10!42;CL:0000514!1.47e-10!42;CL:0000222!1.13e-08!119;CL:0002321!1.28e-07!248;CL:0000220!2.31e-07!246;CL:0000499!5.86e-07!27;CL:0000359!7.96e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.86e-12;23!CL:0000187;2.64e-09;55!CL:0000057;1.70e-08;73!CL:0000192;1.98e-08;43!CL:0000393;4.28e-08;61!CL:0000211;4.28e-08;61!CL:0000134;6.01e-08;55!CL:0000723;1.97e-07;61!CL:0002320;2.22e-07;188!CL:0002570;3.17e-07;8!CL:0000048;5.35e-07;58!CL:0000327;5.69e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.51e-22,76;CL:0000680,9.00e-16,58;CL:0000056,9.00e-16,58;CL:0000355,9.00e-16,58;CL:0000187,6.41e-15,55;CL:0000393,1.37e-13,61;CL:0000211,1.37e-13,61;CL:0002620,1.11e-12,23;CL:0000192,1.88e-11,43;CL:0000514,1.88e-11,43;CL:0000048,9.27e-08,427;CL:0000327,2.16e-07,15;CL:0000034,2.44e-07,441;CL:0002570,3.23e-07,8;CL:0000723,4.70e-07,433;CL:0000499,8.75e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000355;2.00e-09;58!CL:0000514;1.98e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;6.33e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.08e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.01e-14!83;UBERON:0002329!1.01e-14!83;UBERON:0003077!1.01e-14!83;UBERON:0003059!1.01e-14!83;UBERON:0007282!1.01e-14!83;UBERON:0009618!1.01e-14!83;UBERON:0007285!1.01e-14!83;UBERON:0000486!2.65e-14!82;UBERON:0001134!1.20e-13!61;UBERON:0002036!1.20e-13!61;UBERON:0003082!1.20e-13!61;UBERON:0004290!2.70e-13!70;UBERON:0002385!2.71e-13!63;UBERON:0001015!2.71e-13!63;UBERON:0000383!2.71e-13!63;UBERON:0005256!3.51e-13!143;UBERON:0000475!2.78e-10!365;UBERON:0000119!3.59e-10!312;UBERON:0004872!1.69e-09!84;UBERON:0000483!1.72e-09!309;UBERON:0003914!2.09e-09!118;UBERON:0002049!8.30e-09!79;UBERON:0007798!8.30e-09!79;UBERON:0000481!1.30e-08!347;UBERON:0000490!5.08e-08!138;UBERON:0002100!1.28e-07!216;UBERON:0000468!1.58e-07!659;UBERON:0001981!3.16e-07!60;UBERON:0007500!3.16e-07!60;UBERON:0004537!3.16e-07!60;UBERON:0006965!3.16e-07!60;UBERON:0001637!3.20e-07!42;UBERON:0003509!3.20e-07!42;UBERON:0004572!3.20e-07!42;UBERON:0000055!7.07e-07!69;UBERON:0003104!7.15e-07!238;UBERON:0009142!7.15e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;7.48e-07;31!UBERON:0001015;7.48e-07;31!UBERON:0000383;7.48e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.05e-16,83;UBERON:0007503,1.38e-15,78;UBERON:0001134,2.97e-15,62;UBERON:0002036,2.97e-15,62;UBERON:0003082,2.97e-15,62;UBERON:0002329,3.42e-15,71;UBERON:0003059,3.42e-15,71;UBERON:0007282,3.42e-15,71;UBERON:0004290,3.42e-15,71;UBERON:0009618,3.42e-15,71;UBERON:0007524,3.48e-15,73;UBERON:0003077,1.05e-14,72;UBERON:0007285,1.05e-14,72;UBERON:0002385,3.36e-14,64;UBERON:0001015,3.36e-14,64;UBERON:0000383,3.36e-14,64;UBERON:0003104,1.18e-13,160;UBERON:0009142,1.18e-13,160;UBERON:0005256,2.80e-09,122;UBERON:0004872,4.37e-07,83 | |||
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| |||
|short_description=p3@LEPREL2 | |||
}} |
Revision as of 00:09, 11 September 2013
Short description: | p3@LEPREL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LEPREL2_5end |
Coexpression cluster: | C3323_Smooth_Fibroblast_leiomyoma_teratocarcinoma_pagetoid_Chondrocyte_mesenchymal |
Association with transcript: | 145bp_to_ENST00000451242_5end |
EntrezGene: | LEPREL2 |
HGNC: | 19318 |
UniProt: | E7ESD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.51e-22 | 76 |
muscle precursor cell | 9.00e-16 | 58 |
myoblast | 9.00e-16 | 58 |
multi-potent skeletal muscle stem cell | 9.00e-16 | 58 |
muscle cell | 6.41e-15 | 55 |
electrically responsive cell | 1.37e-13 | 61 |
electrically active cell | 1.37e-13 | 61 |
skin fibroblast | 1.11e-12 | 23 |
smooth muscle cell | 1.88e-11 | 43 |
smooth muscle myoblast | 1.88e-11 | 43 |
multi fate stem cell | 9.27e-08 | 427 |
extracellular matrix secreting cell | 2.16e-07 | 15 |
stem cell | 2.44e-07 | 441 |
mesenchymal stem cell of adipose | 3.23e-07 | 8 |
somatic stem cell | 4.70e-07 | 433 |
stromal cell | 8.75e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.05e-16 | 83 |
epithelial vesicle | 1.38e-15 | 78 |
skeletal muscle tissue | 2.97e-15 | 62 |
striated muscle tissue | 2.97e-15 | 62 |
myotome | 2.97e-15 | 62 |
somite | 3.42e-15 | 71 |
presomitic mesoderm | 3.42e-15 | 71 |
presumptive segmental plate | 3.42e-15 | 71 |
dermomyotome | 3.42e-15 | 71 |
trunk paraxial mesoderm | 3.42e-15 | 71 |
dense mesenchyme tissue | 3.48e-15 | 73 |
paraxial mesoderm | 1.05e-14 | 72 |
presumptive paraxial mesoderm | 1.05e-14 | 72 |
muscle tissue | 3.36e-14 | 64 |
musculature | 3.36e-14 | 64 |
musculature of body | 3.36e-14 | 64 |
mesenchyme | 1.18e-13 | 160 |
entire embryonic mesenchyme | 1.18e-13 | 160 |
trunk mesenchyme | 2.80e-09 | 122 |
splanchnic layer of lateral plate mesoderm | 4.37e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.08e-07 | 14 |
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