FFCP PHASE1:Hg19::chr12:69201923..69202028,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4193|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6973|TSSclassifier=S|UniProt=E9PF57,Q96DS0,Q00987|association_with_transcript=0bp_to_ENST00000258149,ENST00000311440,ENST00000356290,ENST00000358483,ENST00000393412,ENST00000428863,ENST00000462284,ENST00000540827,ENST00000544648,NM_002392,uc001sui.2,uc001suk.2,uc009zqw.2,uc009zqx.2,uc009zri.2_5end|coexpression_cluster_id=C153|description=CAGE_peak_1_at_MDM2_5end|id=chr12:69201923..69202028,+|ontology_enrichment_celltype=CL:0000738!5.23e-31!140;CL:0000037!3.70e-29!172;CL:0000566!3.70e-29!172;CL:0002032!5.29e-28!165;CL:0000837!5.29e-28!165;CL:0002087!5.28e-27!119;CL:0000988!8.27e-27!182;CL:0002031!2.17e-25!124;CL:0000766!8.97e-17!76;CL:0000763!6.93e-16!112;CL:0000049!6.93e-16!112;CL:0002057!3.71e-15!42;CL:0002194!2.21e-14!63;CL:0000576!2.21e-14!63;CL:0000040!2.21e-14!63;CL:0000559!2.21e-14!63;CL:0000839!2.98e-14!70;CL:0000860!9.84e-14!45;CL:0002009!1.38e-13!65;CL:0000557!3.41e-13!71;CL:0000838!5.09e-12!52;CL:0000542!9.31e-12!53;CL:0000051!9.31e-12!53;CL:0000945!1.88e-07!24;CL:0000826!1.88e-07!24;CL:0000219!6.36e-07!390|ontology_enrichment_celltype_v019=CL:0000860;2.26e-13;33!CL:0002057;2.26e-13;33!CL:0000576;6.62e-11;48!CL:0000473;1.22e-10;39!CL:0000234;1.22e-10;39!CL:0002087;4.26e-09;104!CL:0000766;3.40e-08;69!CL:0000542;7.62e-08;53!CL:0000738;9.78e-08;136!CL:0000945;1.99e-07;24|ontology_enrichment_celltype_v019_2=CL:0000738,7.36e-32,136;CL:0000037,8.61e-30,168;CL:0002032,1.21e-28,161;CL:0000837,1.21e-28,161;CL:0000988,3.94e-28,177;CL:0002087,6.77e-28,115;CL:0002031,3.42e-26,120;CL:0000766,1.14e-17,72;CL:0000763,1.88e-16,108;CL:0000049,1.88e-16,108;CL:0002194,2.59e-15,59;CL:0000576,2.59e-15,59;CL:0000040,2.59e-15,59;CL:0000559,2.59e-15,59;CL:0000860,3.71e-15,42;CL:0002057,3.71e-15,42;CL:0000839,4.43e-15,66;CL:0002009,1.95e-14,61;CL:0000473,3.62e-14,48;CL:0000234,3.62e-14,48;CL:0000557,6.01e-14,67;CL:0000838,5.09e-12,52;CL:0000542,9.31e-12,53;CL:0000051,9.31e-12,53;CL:0000945,1.88e-07,24;CL:0000826,1.88e-07,24;CL:0000219,2.32e-07,386|ontology_enrichment_development_v019=CL:0002057;1.97e-11;42!CL:0000051;7.62e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.50e-14!102;UBERON:0003061!1.50e-14!102;UBERON:0002193!2.66e-11!112;UBERON:0001474!5.19e-11!86;UBERON:0002371!3.95e-10!80;UBERON:0004765!1.62e-07!101;UBERON:0001434!1.62e-07!101|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.00e-15,98;UBERON:0003061,4.00e-15,98;UBERON:0002193,1.05e-11,108;UBERON:0001474,1.59e-11,82;UBERON:0002371,1.23e-10,76;UBERON:0002405,1.01e-08,93;UBERON:0004765,6.19e-08,90;UBERON:0001434,4.34e-07,100|phase1_expression=39.0608515431697,37.467591680922,48.911178221302,38.0278533741896,31.7342377043374,26.1701557230111,25.3299878168311,30.3225539244879,45.9686705631716,18.6757791741147,20.9340350391728,31.2371162146146,25.8491638663884,22.5254762387285,22.8664189252262,25.5483555651675,30.1347264011988,29.2124036154949,24.8845727383159,21.2999430472843,26.1120884792644,28.524379654506,40.359274185479,50.5066628518943,51.5980248734639,61.0543111926131,65.3520692021568,63.2047573948844,46.4169846681707,74.079073832762,63.9390589295394,15.6301608161418,19.277178801808,28.4710587828427,141.455108259631,91.2726472569246,34.3512514021771,72.0194031091441,66.3802121126169,71.3965764655153,67.8463886946971,63.159264873701,74.1817634786457,123.73390120141,102.782256683356,104.553730371949,105.290353718275,96.2132857971072,84.2401328834682,51.2092458333428,52.2567841319365,49.1883038168257,89.6338769915208,89.076886334568,60.9419189674538,107.67461821837,92.5151848696097,94.6085869513806,79.2757281240638,76.3811084441103,74.8024437184878,67.2896652380901,59.4401699712463,59.6714650745772,81.5487960546321,93.0511768493469,100.274382088288,43.7172677546733,48.4979114130787,43.8721466304336,81.1235333528714,83.2307457331896,88.6094684834476,40.9835255445167,45.9225287924494,40.0448012920998,51.6711703273877,49.7085515305386,62.3615276384671,47.8821409485298,48.1378358821798,48.9539932089219,56.3187982276233,69.9057422415528,79.1663235938564,51.6343569305474,52.4518743017176,61.4985110751297,61.4771731689922,68.6918703265462,54.6444450345071,52.8513470433845,46.2550606031527,58.1553845747714,40.3566165346706,42.4048376487874,62.7504166663128,57.379571361378,62.5028556958508,87.271350593934,43.6735837289011,47.8182283792081,48.7066821019778,71.0798714927407,42.7178565838514,41.4268382871372,44.1410297936975,75.5738786381483,76.2147776700887,79.7523837327829,68.8111544286762,63.1770726902414,34.9956289062463,39.5960425572775,32.4060123795428,85.66186307936,48.669002687444,44.3279404672593,42.5073082592765,58.9346016499579,52.0866763085135,65.5811910669378,39.6012563174542,42.2355816809581,48.7229833554149,50.9071091894636,68.1536237444469,49.7968655765089,62.5810058133407,61.1158984385412,12.1903433156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36.5746532107974,50.5434780269797,28.3823300297162,35.1050880465487,47.3239568171742,31.2975754862704,42.5835983347331,75.8006601385221,86.8936055649395,82.7640894934572,45.2101591408049,39.0778924918414,45.8547307688221,63.3960044860128,17.7108271292274,47.3591194067243,53.9140155888494,39.0304614533902,47.6989121323306,32.9700947817476,81.0850314065152,63.4009891012489,64.4790361609175,55.5877058397351,27.157204792644,50.1676811439972,82.7890905250135,60.8922960590836,41.022561234291,104.255226891657,50.4359571419846,46.5532245671703,37.6681937144436,47.7223142466694,35.4241440813962,44.5378466769452,49.6381601462627,58.4806335234386,38.4514323701051,34.2328368739524,78.5231811425349,31.3091222018272,35.6268564510176,37.6028626969442,38.932149492664,45.0030872651257,62.8227532714692,30.8320144280226,42.7946768307274,32.4745160612667,39.8572145728877,320.835700739742,20.9628054412924,31.3454902780136,47.3438468174947,51.5511545085139,38.6504309457214,44.5813145663165,61.2611786100406,39.4745592137171,41.6817389847007,53.288987040965,34.6236178903303,40.1776376908715,44.0531676106659,51.5920763601137,45.0771138875569,53.2214220975833,44.8260211591981,40.8141462461056,53.7640587846739,39.5952096848351,26.120838835357,30.2549413146428,44.5055836462414,42.4212092773205,31.1102101278306,43.8316185844558,69.0968291899589,84.0842970681208,38.0255215019812,54.356682436058,41.730671707157,4183.20388987236,49.7061046132757,32.5329377735968,30.0464519685352,36.6367620761469,20.6509132233733,32.7779642023666,33.0628010465532,47.842736671575,34.1369234130635,16.7511448258733,20.0663177185261,52.9076192403558,34.4507319989503,56.3260813418085,58.9160241840984,50.304775359561,37.1140618028224,51.9710762573279,114.162458169508,25.6646499958165,41.0274313182612,136.89065143122,27.4851291863573,59.9322488959694,31.9501014566891,33.0024936360975,45.1504604507062,43.1461046286874,298.60218517776,46.721415173357,55.5476768611651,45.6468185790072,42.4817786719542,58.4579969834689,42.7355797264817,69.5590445237505,48.7452252393445,47.6408076816184,16.208756071212,51.8538835655027,42.6618233566223,63.0694165866386,126.059478192355,36.9873706638576,57.1619404345894,30.1545299093778,29.3876064351734,33.2766452614621,30.2838593486652,55.89172620194,20.10486524132,55.7473404450323,93.3197792139133,104.482005458834,186.4547511562,40.6146213653648,33.2668485178071,27.3323412759302,67.9918940356199,54.5091888192188,40.5144565611864,42.137404369082,101.662944081874,76.5381227267928,21.5293176154778,31.632637664248,42.6467268701843,41.8016155962166,42.7791626356601,44.0482426715402,52.4289321420464,43.5785067075278,37.0384872179934,26.8952911611843,52.1295162174738,42.6669710006288,56.313826176829,35.2055359246655,41.9103063665211,40.6111632253163,50.7209959849386,41.9944724917235|short_description=p1@MDM2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4193 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6973 | |||
|TSSclassifier=S | |||
|UniProt=E9PF57,Q96DS0,Q00987 | |||
|association_with_transcript=0bp_to_ENST00000258149,ENST00000311440,ENST00000356290,ENST00000358483,ENST00000393412,ENST00000428863,ENST00000462284,ENST00000540827,ENST00000544648,NM_002392,uc001sui.2,uc001suk.2,uc009zqw.2,uc009zqx.2,uc009zri.2_5end | |||
|coexpression_cluster_id=C153 | |||
|description=CAGE_peak_1_at_MDM2_5end | |||
|id=chr12:69201923..69202028,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.23e-31!140;CL:0000037!3.70e-29!172;CL:0000566!3.70e-29!172;CL:0002032!5.29e-28!165;CL:0000837!5.29e-28!165;CL:0002087!5.28e-27!119;CL:0000988!8.27e-27!182;CL:0002031!2.17e-25!124;CL:0000766!8.97e-17!76;CL:0000763!6.93e-16!112;CL:0000049!6.93e-16!112;CL:0002057!3.71e-15!42;CL:0002194!2.21e-14!63;CL:0000576!2.21e-14!63;CL:0000040!2.21e-14!63;CL:0000559!2.21e-14!63;CL:0000839!2.98e-14!70;CL:0000860!9.84e-14!45;CL:0002009!1.38e-13!65;CL:0000557!3.41e-13!71;CL:0000838!5.09e-12!52;CL:0000542!9.31e-12!53;CL:0000051!9.31e-12!53;CL:0000945!1.88e-07!24;CL:0000826!1.88e-07!24;CL:0000219!6.36e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.26e-13;33!CL:0002057;2.26e-13;33!CL:0000576;6.62e-11;48!CL:0000473;1.22e-10;39!CL:0000234;1.22e-10;39!CL:0002087;4.26e-09;104!CL:0000766;3.40e-08;69!CL:0000542;7.62e-08;53!CL:0000738;9.78e-08;136!CL:0000945;1.99e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.36e-32,136;CL:0000037,8.61e-30,168;CL:0002032,1.21e-28,161;CL:0000837,1.21e-28,161;CL:0000988,3.94e-28,177;CL:0002087,6.77e-28,115;CL:0002031,3.42e-26,120;CL:0000766,1.14e-17,72;CL:0000763,1.88e-16,108;CL:0000049,1.88e-16,108;CL:0002194,2.59e-15,59;CL:0000576,2.59e-15,59;CL:0000040,2.59e-15,59;CL:0000559,2.59e-15,59;CL:0000860,3.71e-15,42;CL:0002057,3.71e-15,42;CL:0000839,4.43e-15,66;CL:0002009,1.95e-14,61;CL:0000473,3.62e-14,48;CL:0000234,3.62e-14,48;CL:0000557,6.01e-14,67;CL:0000838,5.09e-12,52;CL:0000542,9.31e-12,53;CL:0000051,9.31e-12,53;CL:0000945,1.88e-07,24;CL:0000826,1.88e-07,24;CL:0000219,2.32e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.97e-11;42!CL:0000051;7.62e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.50e-14!102;UBERON:0003061!1.50e-14!102;UBERON:0002193!2.66e-11!112;UBERON:0001474!5.19e-11!86;UBERON:0002371!3.95e-10!80;UBERON:0004765!1.62e-07!101;UBERON:0001434!1.62e-07!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.00e-15,98;UBERON:0003061,4.00e-15,98;UBERON:0002193,1.05e-11,108;UBERON:0001474,1.59e-11,82;UBERON:0002371,1.23e-10,76;UBERON:0002405,1.01e-08,93;UBERON:0004765,6.19e-08,90;UBERON:0001434,4.34e-07,100 | |||
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| |||
|short_description=p1@MDM2 | |||
}} |
Revision as of 00:08, 11 September 2013
Short description: | p1@MDM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_MDM2_5end |
Coexpression cluster: | C153_rhabdomyosarcoma_liposarcoma_pancreatic_somatostatinoma_Reticulocytes_lymphoma_testicular |
Association with transcript: | 0bp_to_ENST00000258149, ENST00000311440, ENST00000356290, ENST00000358483, ENST00000393412, ENST00000428863, ENST00000462284, ENST00000540827, ENST00000544648, NM_002392, uc001sui.2, uc001suk.2, uc009zqw.2, uc009zqx.2, uc009zri.2_5end |
EntrezGene: | MDM2 |
HGNC: | 6973 |
UniProt: | E9PF57Q96DS0Q00987 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.36e-32 | 136 |
hematopoietic stem cell | 8.61e-30 | 168 |
hematopoietic oligopotent progenitor cell | 1.21e-28 | 161 |
hematopoietic multipotent progenitor cell | 1.21e-28 | 161 |
hematopoietic cell | 3.94e-28 | 177 |
nongranular leukocyte | 6.77e-28 | 115 |
hematopoietic lineage restricted progenitor cell | 3.42e-26 | 120 |
myeloid leukocyte | 1.14e-17 | 72 |
myeloid cell | 1.88e-16 | 108 |
common myeloid progenitor | 1.88e-16 | 108 |
monopoietic cell | 2.59e-15 | 59 |
monocyte | 2.59e-15 | 59 |
monoblast | 2.59e-15 | 59 |
promonocyte | 2.59e-15 | 59 |
classical monocyte | 3.71e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.71e-15 | 42 |
myeloid lineage restricted progenitor cell | 4.43e-15 | 66 |
macrophage dendritic cell progenitor | 1.95e-14 | 61 |
defensive cell | 3.62e-14 | 48 |
phagocyte | 3.62e-14 | 48 |
granulocyte monocyte progenitor cell | 6.01e-14 | 67 |
lymphoid lineage restricted progenitor cell | 5.09e-12 | 52 |
lymphocyte | 9.31e-12 | 53 |
common lymphoid progenitor | 9.31e-12 | 53 |
lymphocyte of B lineage | 1.88e-07 | 24 |
pro-B cell | 1.88e-07 | 24 |
motile cell | 2.32e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.00e-15 | 98 |
blood island | 4.00e-15 | 98 |
hemolymphoid system | 1.05e-11 | 108 |
bone element | 1.59e-11 | 82 |
bone marrow | 1.23e-10 | 76 |
immune system | 1.01e-08 | 93 |
skeletal element | 6.19e-08 | 90 |
skeletal system | 4.34e-07 | 100 |
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