FFCP PHASE1:Hg19::chr12:54718904..54718936,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22818|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2243|TSSclassifier=W|UniProt=P61923,B4DHZ0,B4DDX8,F8VWL5,F8W651,F8VUC5,F8VYZ4,F8W156,F8VVA7,F8VS17,F8VYE0|association_with_transcript=0bp_to_ENST00000262061,ENST00000416254,ENST00000455864,ENST00000549043,ENST00000549116,ENST00000550027,ENST00000550171,ENST00000551412,ENST00000551779,ENST00000551962,ENST00000552218,ENST00000552362,ENST00000553231,NM_016057,uc001sfs.1,uc001sft.2,uc009znm.1,uc010sot.1_5end|description=CAGE_peak_1_at_COPZ1_5end|id=chr12:54718904..54718936,+|ontology_enrichment_celltype=CL:0000548!5.26e-29!679;CL:0000004!5.26e-29!679;CL:0000255!5.26e-29!679;CL:0000012!7.03e-28!682;CL:0000003!1.54e-19!722;CL:0000144!1.63e-19!625;CL:0000220!4.74e-19!246;CL:0002321!9.38e-19!248;CL:0000222!1.04e-18!119;CL:0000066!2.86e-17!254;CL:0002371!2.63e-16!591;CL:0000183!3.75e-15!59;CL:0000055!1.53e-14!180;CL:0000192!6.67e-13!42;CL:0000514!6.67e-13!42;CL:0000187!1.22e-12!54;CL:0000680!4.74e-12!57;CL:0000056!4.74e-12!57;CL:0000355!4.74e-12!57;CL:0000063!6.09e-11!578;CL:0000393!1.56e-10!60;CL:0000211!1.56e-10!60;CL:0000359!4.35e-09!32;CL:0000213!1.86e-07!57;CL:0000215!1.86e-07!57;CL:1000497!5.66e-07!18;CL:0002518!5.66e-07!18;CL:0000057!9.37e-07!75|ontology_enrichment_celltype_v019=CL:0000192;7.40e-09;43!CL:0000359;1.23e-08;32!CL:0000134;5.48e-08;55!CL:1000497;1.75e-07;17!CL:0002518;1.75e-07;17!CL:0000187;4.31e-07;55!CL:0000048;6.38e-07;58!CL:0000723;6.62e-07;61|ontology_enrichment_celltype_v019_2=CL:0002321,6.21e-19,250;CL:0000222,8.16e-19,121;CL:0000066,2.13e-17,253;CL:0000192,1.70e-12,43;CL:0000514,1.70e-12,43;CL:0000187,2.59e-12,55;CL:0000680,9.45e-12,58;CL:0000056,9.45e-12,58;CL:0000355,9.45e-12,58;CL:0000393,2.82e-10,61;CL:0000211,2.82e-10,61;CL:0000359,4.35e-09,32;CL:0000213,9.47e-08,58;CL:0000215,9.47e-08,58;CL:1000497,1.82e-07,17;CL:0002518,1.82e-07,17|ontology_enrichment_development_v019=CL:0000514;7.40e-09;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003104!7.40e-14!238;UBERON:0009142!7.40e-14!238;UBERON:0005256!1.92e-12!143;UBERON:0000914!8.62e-12!83;UBERON:0002329!8.62e-12!83;UBERON:0003077!8.62e-12!83;UBERON:0003059!8.62e-12!83;UBERON:0007282!8.62e-12!83;UBERON:0009618!8.62e-12!83;UBERON:0007285!8.62e-12!83;UBERON:0002100!1.21e-11!216;UBERON:0000486!3.68e-11!82;UBERON:0004290!4.25e-11!70;UBERON:0001134!7.53e-10!61;UBERON:0002036!7.53e-10!61;UBERON:0003082!7.53e-10!61;UBERON:0000490!1.82e-09!138;UBERON:0002049!2.09e-09!79;UBERON:0007798!2.09e-09!79;UBERON:0003914!5.18e-09!118;UBERON:0002385!5.29e-09!63;UBERON:0001015!5.29e-09!63;UBERON:0000383!5.29e-09!63;UBERON:0000055!7.51e-08!69;UBERON:0004872!2.21e-07!84;UBERON:0000481!2.38e-07!347;UBERON:0001737!2.98e-07!9;UBERON:0001637!3.67e-07!42;UBERON:0003509!3.67e-07!42;UBERON:0004572!3.67e-07!42;UBERON:0001048!7.82e-07!168;UBERON:0000926!7.98e-07!448;UBERON:0004120!7.98e-07!448;UBERON:0006603!7.98e-07!448|ontology_enrichment_uberon_v019=UBERON:0001737;3.00e-07;9!UBERON:0001557;3.00e-07;9!UBERON:0000072;7.28e-07;37|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.13e-13,78;UBERON:0002100,2.86e-11,199;UBERON:0000486,5.98e-11,83;UBERON:0002329,7.35e-11,71;UBERON:0003059,7.35e-11,71;UBERON:0007282,7.35e-11,71;UBERON:0004290,7.35e-11,71;UBERON:0009618,7.35e-11,71;UBERON:0003104,8.00e-11,160;UBERON:0009142,8.00e-11,160;UBERON:0000490,1.51e-10,148;UBERON:0007524,2.05e-10,73;UBERON:0003077,2.55e-10,72;UBERON:0007285,2.55e-10,72;UBERON:0005256,1.28e-09,122;UBERON:0001134,1.30e-09,62;UBERON:0002036,1.30e-09,62;UBERON:0003082,1.30e-09,62;UBERON:0002049,1.44e-09,78;UBERON:0007798,1.44e-09,78;UBERON:0003914,3.77e-09,117;UBERON:0002385,8.66e-09,64;UBERON:0001015,8.66e-09,64;UBERON:0000383,8.66e-09,64;UBERON:0000055,5.27e-08,68;UBERON:0004872,1.66e-07,83;UBERON:0001737,2.98e-07,9;UBERON:0001637,3.67e-07,42;UBERON:0003509,3.67e-07,42;UBERON:0004572,3.67e-07,42;UBERON:0001048,4.34e-07,160|phase1_expression=146.614452071339,146.01655729365,143.773492177891,212.155392508636,176.996593393206,183.191090061077,288.761861111874,241.948711522476,187.792466675684,258.757835136089,471.713589549361,253.391991671,220.772960777216,250.379332038174,189.890696292096,298.512365024588,267.596370442646,279.708764618364,223.473221846052,312.973729631195,284.376963594489,266.749967977853,167.161816484537,108.404544657724,134.707252285223,102.852444136742,108.865381610628,100.434956956255,92.0472407826435,62.9480212879429,72.4539457119236,126.880128978092,123.494426699083,207.801753713735,96.5241319230558,92.9786780467737,90.1353348757981,44.8736280910821,44.1197784434312,53.3846741960995,119.79477871836,105.589335122187,84.4847861840132,70.808942285648,60.0822750465207,62.1015196640809,59.9666915216666,57.9746722110774,62.870393291706,62.1415567415845,48.6705342405291,79.2215470126761,39.9904989654477,42.6019891165325,40.6279459783025,65.5083341608264,75.8679097160811,81.7993483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5,252.35267543077,277.272668732888,120.927493478112,74.2116387574024,125.235196012285,108.32635949324,172.931635740137,82.1542711255772,34.7771152612571,52.6285754935906,196.920950404863,145.896709619551,103.156640540393,182.042585305413,78.7054205159671,78.8903974681002,171.329284855518,157.843207501641,82.9843635101236,55.4898159436864,85.234563967718,87.3084893775865,95.0830629058433,195.218241639041,87.7207498167316,57.8404495635305,44.9435441236334,64.7952391129781,54.1333771499839,77.9930820943776,151.491755255173,65.2397729562196,153.772205187231,173.848388128885,159.51022575536,114.273717016879,126.660979005861,267.315351970391,226.935623861655,264.087590075244,239.405398667713,192.952580644225,233.130540058292,234.789910175244,190.097271170391,246.834274525455,201.526569435871,164.075670178613,193.865141342514,196.718166362221,233.064888806561,215.065947077418,172.175870397872,226.137701540814,156.891747413544,240.05373259075,182.57605383937,217.291556896954,167.052153556258,140.92594459931,167.611633393861,257.546778887095,232.020397759718,74.4490899549041,155.636822969101,137.885943254077,469.528731245416,322.829237929476,198.877805444173,174.742007017618,137.719318791664,268.348457582885,191.873543381369,227.928998270187,262.941834163257,241.080862811935,188.593757680729,197.931585811977,215.132848973587,50.1878123230783,255.267004579599,188.269478724036,210.18153161876,124.491742561637,137.632828902083,94.4565191413063,118.392538346118,68.176015274556,199.597161426885,70.9394941958545,131.819860380318,300.740941596806,211.506268411211,94.2581516507913,83.6720536438251,272.227345352557,118.710876714719,78.7558938986677,114.577881934807,172.766455377049,57.5404265512441,110.983518378043,109.933272531747,347.447704755894,173.869240239507,199.365805756933,86.3883077547381,63.7634593465132,41.0259017776879,67.8935165636899,70.3280032458593,117.705643694099,75.0861752188108,55.6800739010702,118.955034823243,178.134282255088,130.784590745957,176.061115213115,112.507718162814,55.2287940848081,109.602838386067,114.39490941922,117.795760122856,253.210539639522,81.4529819837224,131.508849760608,130.556924129651,85.0298190345589,66.391638382177,51.2583255322936,79.8405050341287,80.9522717346965,263.163728091447,90.3104344668515,210.166137009747,157.275548424342,68.5698349924207,82.7257956658307,157.811057101524,122.937583329701,134.738900277048,140.124528867828,132.903207313999,70.7564920288818,101.224298513225,161.807368170152,98.5510220763733,94.5841768848694,75.2583675697649,96.974168506571,61.1816342741362,279.626230628115,343.025711902902,106.071191558158,134.943624419749,125.308256546839,74.9329153624117,84.1796932966765,135.726587526789,132.648256701999,38.019281399775,321.379837038747,128.271888791933,133.018124829045,94.4153121925772,139.755189811871,191.087133569221,255.128896706975,245.74638365975,181.872382889045,194.337172421737,62.1531683700379,81.9249198712851,121.780515290511,93.7422216604139,204.930969992805,72.6170329338994,193.482987695104,220.696644304128,266.056050523938,131.790562433706,116.841675375428,159.767038728393,245.035311404353,66.9254918388162,114.53880189139,42.0100119625983,65.0531616716318,105.241276168267,113.851166840837,86.653172377425,111.318772530368,129.523738078708,109.989226181085,125.277679459071,213.20131129312,70.8426296599122,143.582265705621,53.7523436817942,166.133454989423,116.809380147991,87.7064887584159,152.359730068435,198.273344682878,166.383226307311,209.391256067914,82.7651746918118,99.759467202854,104.90635883747,122.99852866883,127.997137122203,115.603783614835,132.122873207082,85.0994780990829,90.035947732476,50.5793358069855,54.4057558233569,108.962564751401,90.4644839562213,113.030592213011,97.0848531587218,93.0694459419091,198.451839511318,104.898821069316,111.906408419038,118.412722175507,110.794127208996,125.729026053362,101.79406910308,86.3688679962439,143.334825513772,55.9909618632126,184.23148952061,140.784565442073,122.363685627049,110.675760501881,49.2660012897279,88.1579215928695,140.408999628816|short_description=p1@COPZ1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=22818 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2243 | |||
|TSSclassifier=W | |||
|UniProt=P61923,B4DHZ0,B4DDX8,F8VWL5,F8W651,F8VUC5,F8VYZ4,F8W156,F8VVA7,F8VS17,F8VYE0 | |||
|association_with_transcript=0bp_to_ENST00000262061,ENST00000416254,ENST00000455864,ENST00000549043,ENST00000549116,ENST00000550027,ENST00000550171,ENST00000551412,ENST00000551779,ENST00000551962,ENST00000552218,ENST00000552362,ENST00000553231,NM_016057,uc001sfs.1,uc001sft.2,uc009znm.1,uc010sot.1_5end | |||
|description=CAGE_peak_1_at_COPZ1_5end | |||
|id=chr12:54718904..54718936,+ | |||
|ontology_enrichment_celltype=CL:0000548!5.26e-29!679;CL:0000004!5.26e-29!679;CL:0000255!5.26e-29!679;CL:0000012!7.03e-28!682;CL:0000003!1.54e-19!722;CL:0000144!1.63e-19!625;CL:0000220!4.74e-19!246;CL:0002321!9.38e-19!248;CL:0000222!1.04e-18!119;CL:0000066!2.86e-17!254;CL:0002371!2.63e-16!591;CL:0000183!3.75e-15!59;CL:0000055!1.53e-14!180;CL:0000192!6.67e-13!42;CL:0000514!6.67e-13!42;CL:0000187!1.22e-12!54;CL:0000680!4.74e-12!57;CL:0000056!4.74e-12!57;CL:0000355!4.74e-12!57;CL:0000063!6.09e-11!578;CL:0000393!1.56e-10!60;CL:0000211!1.56e-10!60;CL:0000359!4.35e-09!32;CL:0000213!1.86e-07!57;CL:0000215!1.86e-07!57;CL:1000497!5.66e-07!18;CL:0002518!5.66e-07!18;CL:0000057!9.37e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000192;7.40e-09;43!CL:0000359;1.23e-08;32!CL:0000134;5.48e-08;55!CL:1000497;1.75e-07;17!CL:0002518;1.75e-07;17!CL:0000187;4.31e-07;55!CL:0000048;6.38e-07;58!CL:0000723;6.62e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.21e-19,250;CL:0000222,8.16e-19,121;CL:0000066,2.13e-17,253;CL:0000192,1.70e-12,43;CL:0000514,1.70e-12,43;CL:0000187,2.59e-12,55;CL:0000680,9.45e-12,58;CL:0000056,9.45e-12,58;CL:0000355,9.45e-12,58;CL:0000393,2.82e-10,61;CL:0000211,2.82e-10,61;CL:0000359,4.35e-09,32;CL:0000213,9.47e-08,58;CL:0000215,9.47e-08,58;CL:1000497,1.82e-07,17;CL:0002518,1.82e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000514;7.40e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p1@COPZ1 | |||
}} |
Revision as of 23:22, 10 September 2013
Short description: | p1@COPZ1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_COPZ1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000262061, ENST00000416254, ENST00000455864, ENST00000549043, ENST00000549116, ENST00000550027, ENST00000550171, ENST00000551412, ENST00000551779, ENST00000551962, ENST00000552218, ENST00000552362, ENST00000553231, NM_016057, uc001sfs.1, uc001sft.2, uc009znm.1, uc010sot.1_5end |
EntrezGene: | COPZ1 |
HGNC: | 2243 |
UniProt: | P61923B4DHZ0B4DDX8F8VWL5F8W651F8VUC5F8VYZ4F8W156F8VVA7F8VS17F8VYE0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.21e-19 | 250 |
mesodermal cell | 8.16e-19 | 121 |
epithelial cell | 2.13e-17 | 253 |
smooth muscle cell | 1.70e-12 | 43 |
smooth muscle myoblast | 1.70e-12 | 43 |
muscle cell | 2.59e-12 | 55 |
muscle precursor cell | 9.45e-12 | 58 |
myoblast | 9.45e-12 | 58 |
multi-potent skeletal muscle stem cell | 9.45e-12 | 58 |
electrically responsive cell | 2.82e-10 | 61 |
electrically active cell | 2.82e-10 | 61 |
vascular associated smooth muscle cell | 4.35e-09 | 32 |
lining cell | 9.47e-08 | 58 |
barrier cell | 9.47e-08 | 58 |
kidney cell | 1.82e-07 | 17 |
kidney epithelial cell | 1.82e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.13e-13 | 78 |
trunk | 2.86e-11 | 199 |
multilaminar epithelium | 5.98e-11 | 83 |
somite | 7.35e-11 | 71 |
presomitic mesoderm | 7.35e-11 | 71 |
presumptive segmental plate | 7.35e-11 | 71 |
dermomyotome | 7.35e-11 | 71 |
trunk paraxial mesoderm | 7.35e-11 | 71 |
mesenchyme | 8.00e-11 | 160 |
entire embryonic mesenchyme | 8.00e-11 | 160 |
unilaminar epithelium | 1.51e-10 | 148 |
dense mesenchyme tissue | 2.05e-10 | 73 |
paraxial mesoderm | 2.55e-10 | 72 |
presumptive paraxial mesoderm | 2.55e-10 | 72 |
trunk mesenchyme | 1.28e-09 | 122 |
skeletal muscle tissue | 1.30e-09 | 62 |
striated muscle tissue | 1.30e-09 | 62 |
myotome | 1.30e-09 | 62 |
vasculature | 1.44e-09 | 78 |
vascular system | 1.44e-09 | 78 |
epithelial tube | 3.77e-09 | 117 |
muscle tissue | 8.66e-09 | 64 |
musculature | 8.66e-09 | 64 |
musculature of body | 8.66e-09 | 64 |
vessel | 5.27e-08 | 68 |
splanchnic layer of lateral plate mesoderm | 1.66e-07 | 83 |
larynx | 2.98e-07 | 9 |
artery | 3.67e-07 | 42 |
arterial blood vessel | 3.67e-07 | 42 |
arterial system | 3.67e-07 | 42 |
primordium | 4.34e-07 | 160 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.