FFCP PHASE1:Hg19::chr12:4382956..4382975,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=894|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1583|TSSclassifier=S|UniProt=P30279|association_with_transcript=18bp_to_ENST00000261254_5end|coexpression_cluster_id=C539|description=CAGE_peak_2_at_CCND2_5end|id=chr12:4382956..4382975,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.95e-12!115;UBERON:0001869!2.75e-09!32;UBERON:0003080!3.32e-09!42;UBERON:0001893!3.67e-09!34;UBERON:0002780!5.24e-09!41;UBERON:0001890!5.24e-09!41;UBERON:0006240!5.24e-09!41;UBERON:0000956!5.74e-09!25;UBERON:0000203!5.74e-09!25;UBERON:0002020!6.30e-09!34;UBERON:0003528!6.30e-09!34;UBERON:0002791!7.28e-09!33;UBERON:0001049!1.43e-08!57;UBERON:0005068!1.43e-08!57;UBERON:0006241!1.43e-08!57;UBERON:0007135!1.43e-08!57;UBERON:0001017!1.86e-08!82;UBERON:0002619!3.46e-08!22;UBERON:0001950!1.04e-07!20;UBERON:0005743!1.06e-07!86;UBERON:0002616!3.55e-07!59;UBERON:0003056!6.77e-07!61|ontology_enrichment_uberon_v019=UBERON:0000956;3.97e-09;25!UBERON:0000203;3.97e-09;25!UBERON:0001869;1.12e-08;32!UBERON:0002791;2.40e-08;32!UBERON:0002619;2.48e-08;22!UBERON:0001893;3.39e-08;34!UBERON:0003528;4.51e-08;34!UBERON:0002020;4.51e-08;34!UBERON:0001950;7.62e-08;20!UBERON:0002780;3.90e-07;41!UBERON:0001890;3.90e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.80e-12,114;UBERON:0001869,1.96e-09,32;UBERON:0001893,2.62e-09,34;UBERON:0002780,3.77e-09,41;UBERON:0001890,3.77e-09,41;UBERON:0003080,3.77e-09,41;UBERON:0006240,3.77e-09,41;UBERON:0000956,4.14e-09,25;UBERON:0000203,4.14e-09,25;UBERON:0002791,4.54e-09,32;UBERON:0003528,4.55e-09,34;UBERON:0002020,4.55e-09,34;UBERON:0001017,1.42e-08,81;UBERON:0001049,1.93e-08,56;UBERON:0005068,1.93e-08,56;UBERON:0006241,1.93e-08,56;UBERON:0007135,1.93e-08,56;UBERON:0002619,2.58e-08,22;UBERON:0010371,4.06e-08,104;UBERON:0000073,7.29e-08,53;UBERON:0002616,7.29e-08,53;UBERON:0001950,7.90e-08,20;UBERON:0003075,3.22e-07,82;UBERON:0007284,3.22e-07,82;UBERON:0003056,8.93e-07,61|phase1_expression=2.36181893051724,3.21150785836475,3.94672331468719,10.007329835313,10.7270662662549,2.61701557230111,5.06599756336621,43.5886712664513,12.7980957817921,23.8361918406464,11.1648186875588,40.1932124719517,42.7302504730095,1.73272894144065,2.98257638155124,20.1697543935533,22.9023920649111,21.1789926212338,14.1500511649247,3.57051068422685,0.204000691244253,3.44800193625897,35.20702641712,11.4974517061223,34.6497685281656,129.06224230829,138.667895580958,118.617147439715,14.1611139665605,16.8884935162774,10.8371286321253,49.6487461218621,56.3255068115328,31.429090864177,0,0,19.9648298747696,6.09394949385065,8.82395568868623,9.54847831149748,0.223915474239924,3.88672399222775,0,2.90796477559129,6.42389104270976,2.91100873425379,2.55671940596253,18.0913870729603,13.3173739484895,4.31538588483226,11.5272317938095,4.49316236788312,6.55016793399575,18.719055823931,6.77132432971709,9.03563229804502,17.73889975376,4.71919317334678,7.95818120164347,20.8603867599461,12.7867425159808,1.64925650093358,4.9865914405408,2.98357325372886,3.48251086354301,9.64554881974938,4.9825779919646,10.3011952755265,9.90817544998383,6.08128765174327,6.05399502633369,4.41933163185078,1.89877432464531,0.422510572623884,0.425208599930087,0.838634582033504,1.79725809834392,0.450530678524519,0.64290234678832,0.285012743741249,0,0.182664153764634,1.75996244461323,3.82297027883492,1.77901850772711,3.84057200309856,1.20118796110804,4.02326707968138,3.96626923670917,1.90810750907073,3.41527781465669,5.28513470433845,4.20500550937752,33.0428321447565,20.7388168303168,24.7581039688572,15.343362068879,22.7946242394516,27.5506008659342,45.4747267462644,13.0368906653436,8.99550830895993,7.79306913631645,35.4285252894852,24.1576844129366,19.0519149341914,10.8321545506006,42.2701355094728,43.3097627374395,40.4517245325043,35.9255023121603,30.1395209164455,12.0112116161269,9.09638815505025,8.36284190439814,31.7266159553185,14.1791582632711,16.8377448286489,16.4462799812677,16.8839669591771,13.0216690771284,15.207232711174,12.7988851216107,16.1263130054567,11.2437653897111,18.7054029114773,15.6014319414999,24.7976294166421,31.8253832982374,23.027080217365,9.75227465255847,1.34140171940727,15.5992325449107,0.722878304769133,2.50668955317945,0.144846518960824,7.15757352345989,15.5723158496843,1.41802225746102,3.76939975686359,1.66886092816939,11.6571377192964,46.2655016131529,40.4155042635028,3.24547393654683,3.83085422058388,10.9025527625469,0.715471872916026,2.28797964312051,1.11437250398869,1.19257444420023,4.30117297553062,0.347140501607594,0.56530794192401,7.1314904155684,4.67700671298115,9.8227634272301,19.3812569376997,29.8843660656837,68.9524462295221,51.96498190708,15.9657142200888,86.6420304296002,5.8826092855339,34.0259618110339,0.892997282840798,0.898117490504679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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=894 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1583 | |||
|TSSclassifier=S | |||
|UniProt=P30279 | |||
|association_with_transcript=18bp_to_ENST00000261254_5end | |||
|coexpression_cluster_id=C539 | |||
|description=CAGE_peak_2_at_CCND2_5end | |||
|id=chr12:4382956..4382975,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.95e-12!115;UBERON:0001869!2.75e-09!32;UBERON:0003080!3.32e-09!42;UBERON:0001893!3.67e-09!34;UBERON:0002780!5.24e-09!41;UBERON:0001890!5.24e-09!41;UBERON:0006240!5.24e-09!41;UBERON:0000956!5.74e-09!25;UBERON:0000203!5.74e-09!25;UBERON:0002020!6.30e-09!34;UBERON:0003528!6.30e-09!34;UBERON:0002791!7.28e-09!33;UBERON:0001049!1.43e-08!57;UBERON:0005068!1.43e-08!57;UBERON:0006241!1.43e-08!57;UBERON:0007135!1.43e-08!57;UBERON:0001017!1.86e-08!82;UBERON:0002619!3.46e-08!22;UBERON:0001950!1.04e-07!20;UBERON:0005743!1.06e-07!86;UBERON:0002616!3.55e-07!59;UBERON:0003056!6.77e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;3.97e-09;25!UBERON:0000203;3.97e-09;25!UBERON:0001869;1.12e-08;32!UBERON:0002791;2.40e-08;32!UBERON:0002619;2.48e-08;22!UBERON:0001893;3.39e-08;34!UBERON:0003528;4.51e-08;34!UBERON:0002020;4.51e-08;34!UBERON:0001950;7.62e-08;20!UBERON:0002780;3.90e-07;41!UBERON:0001890;3.90e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.80e-12,114;UBERON:0001869,1.96e-09,32;UBERON:0001893,2.62e-09,34;UBERON:0002780,3.77e-09,41;UBERON:0001890,3.77e-09,41;UBERON:0003080,3.77e-09,41;UBERON:0006240,3.77e-09,41;UBERON:0000956,4.14e-09,25;UBERON:0000203,4.14e-09,25;UBERON:0002791,4.54e-09,32;UBERON:0003528,4.55e-09,34;UBERON:0002020,4.55e-09,34;UBERON:0001017,1.42e-08,81;UBERON:0001049,1.93e-08,56;UBERON:0005068,1.93e-08,56;UBERON:0006241,1.93e-08,56;UBERON:0007135,1.93e-08,56;UBERON:0002619,2.58e-08,22;UBERON:0010371,4.06e-08,104;UBERON:0000073,7.29e-08,53;UBERON:0002616,7.29e-08,53;UBERON:0001950,7.90e-08,20;UBERON:0003075,3.22e-07,82;UBERON:0007284,3.22e-07,82;UBERON:0003056,8.93e-07,61 | |||
|phase1_expression=2.36181893051724,3.21150785836475,3.94672331468719,10.007329835313,10.7270662662549,2.61701557230111,5.06599756336621,43.5886712664513,12.7980957817921,23.8361918406464,11.1648186875588,40.1932124719517,42.7302504730095,1.73272894144065,2.98257638155124,20.1697543935533,22.9023920649111,21.1789926212338,14.1500511649247,3.57051068422685,0.204000691244253,3.44800193625897,35.20702641712,11.4974517061223,34.6497685281656,129.06224230829,138.667895580958,118.617147439715,14.1611139665605,16.8884935162774,10.8371286321253,49.6487461218621,56.3255068115328,31.429090864177,0,0,19.9648298747696,6.09394949385065,8.82395568868623,9.54847831149748,0.223915474239924,3.88672399222775,0,2.90796477559129,6.42389104270976,2.91100873425379,2.55671940596253,18.0913870729603,13.3173739484895,4.31538588483226,11.5272317938095,4.49316236788312,6.55016793399575,18.719055823931,6.77132432971709,9.03563229804502,17.73889975376,4.71919317334678,7.95818120164347,20.8603867599461,12.7867425159808,1.64925650093358,4.9865914405408,2.98357325372886,3.48251086354301,9.64554881974938,4.9825779919646,10.3011952755265,9.90817544998383,6.08128765174327,6.05399502633369,4.41933163185078,1.89877432464531,0.422510572623884,0.425208599930087,0.838634582033504,1.79725809834392,0.450530678524519,0.64290234678832,0.285012743741249,0,0.182664153764634,1.75996244461323,3.82297027883492,1.77901850772711,3.84057200309856,1.20118796110804,4.02326707968138,3.96626923670917,1.90810750907073,3.41527781465669,5.28513470433845,4.20500550937752,33.0428321447565,20.7388168303168,24.7581039688572,15.343362068879,22.7946242394516,27.5506008659342,45.4747267462644,13.0368906653436,8.99550830895993,7.79306913631645,35.4285252894852,24.1576844129366,19.0519149341914,10.8321545506006,42.2701355094728,43.3097627374395,40.4517245325043,35.9255023121603,30.1395209164455,12.0112116161269,9.09638815505025,8.36284190439814,31.7266159553185,14.1791582632711,16.8377448286489,16.4462799812677,16.8839669591771,13.0216690771284,15.207232711174,12.7988851216107,16.1263130054567,11.2437653897111,18.7054029114773,15.6014319414999,24.7976294166421,31.8253832982374,23.027080217365,9.75227465255847,1.34140171940727,15.5992325449107,0.722878304769133,2.50668955317945,0.144846518960824,7.15757352345989,15.5723158496843,1.41802225746102,3.76939975686359,1.66886092816939,11.6571377192964,46.2655016131529,40.4155042635028,3.24547393654683,3.83085422058388,10.9025527625469,0.715471872916026,2.28797964312051,1.11437250398869,1.19257444420023,4.30117297553062,0.347140501607594,0.56530794192401,7.1314904155684,4.67700671298115,9.8227634272301,19.3812569376997,29.8843660656837,68.9524462295221,51.96498190708,15.9657142200888,86.6420304296002,5.8826092855339,34.0259618110339,0.892997282840798,0.898117490504679,1.23872628531654,1.53316637465883,0.949265659568129,1.83201743930407,1.31780417436063,3.87780264148325,63.2336375606675,5.96366342034382,4.30543739659571,33.896750288184,3.15520282823695,3.19201543978521,12.3349072031308,6.4049397437823,7.64669400093196,11.5148083097914,1.61652806483626,5.39424280274414,6.65972681637698,2.30470369792,18.9800359785375,10.6134426122309,5.70471821544449,5.82849854152024,18.0849127911398,10.8454872726648,11.2360645361799,0.408308342509787,3.68502951935304,0.309977343527296,0,0.741800787835671,6.37112953356618,12.2165084108761,2.35670559535693,4.12891115577482,1.38532057742091,0,0,0,9.1880068359617,0.358779271377724,0.213557388818567,0.211931901159562,0,0,0,0,0,0,0,0.276149695926898,0.323292113637624,0.355009592516614,0,0,63.0030381312348,114.007878406969,242.923492294486,26.7122416423814,15.9035721985782,28.235128117293,25.5006195337811,24.475122534936,4.01475094983413,0,0,1.38134921352481,1.85747171212792,5.0531563716871,0,0,0,0,0,0,0,0,0,11.0723318193697,5.60967095213783,13.5819423739362,5.88034845542168,0,0,0,0,3.07471096357784,3.94605963686609,106.787027702593,51.704806498505,37.6983646543616,98.606694093834,22.8065813717227,1.03993478527958,2.88662684050547,5.91245065372892,14.9109041679494,13.5704460895409,7.87075371380238,11.6055032863105,0,0,0.492434012174795,2.34004265139238,2.22946743433092,74.0497288495538,59.6336555105951,86.7663595123405,23.016540334632,38.363679883843,55.9738711581208,1.97065295158377,0.528290604079356,4.97587477297853,3.60299883542404,2.27236380167484,0.317489471460845,0,0,10.2643467613623,0.514137463516618,0,0,0.897048674762886,6.5394010324992,0.7333828582095,1.03417372606222,0,5.071816515336,0.531876233169741,2.08014873822732,0.514414748524284,1.41849132023278,0.799266537048298,3.14551586047925,4.88359444852299,7.40916303102692,3.90883421152482,3.19852753868291,0.791951872933429,100.379312560842,117.65701691104,94.1745576934977,0,0,2.10833939483032,10.7831184971212,1.14861935834114,1.42636905040718,0.868687840005475,0,2.86497541183833,39.9023112616957,21.0822913416062,29.3253501808944,29.0055261992231,67.8432646673977,93.7006947774876,34.7979965749963,41.3765175375841,48.4833451256404,2.99602809578873,5.9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| |||
|short_description=p2@CCND2 | |||
}} |
Revision as of 22:38, 10 September 2013
Short description: | p2@CCND2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CCND2_5end |
Coexpression cluster: | C539_teratocarcinoma_diffuse_Gingival_Placental_lymphangiectasia_mycosis_Sebocyte |
Association with transcript: | 18bp_to_ENST00000261254_5end |
EntrezGene: | CCND2 |
HGNC: | 1583 |
UniProt: | P30279 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.80e-12 | 114 |
cerebral hemisphere | 1.96e-09 | 32 |
telencephalon | 2.62e-09 | 34 |
regional part of forebrain | 3.77e-09 | 41 |
forebrain | 3.77e-09 | 41 |
anterior neural tube | 3.77e-09 | 41 |
future forebrain | 3.77e-09 | 41 |
cerebral cortex | 4.14e-09 | 25 |
pallium | 4.14e-09 | 25 |
regional part of telencephalon | 4.54e-09 | 32 |
brain grey matter | 4.55e-09 | 34 |
gray matter | 4.55e-09 | 34 |
central nervous system | 1.42e-08 | 81 |
neural tube | 1.93e-08 | 56 |
neural rod | 1.93e-08 | 56 |
future spinal cord | 1.93e-08 | 56 |
neural keel | 1.93e-08 | 56 |
regional part of cerebral cortex | 2.58e-08 | 22 |
ecto-epithelium | 4.06e-08 | 104 |
regional part of nervous system | 7.29e-08 | 53 |
regional part of brain | 7.29e-08 | 53 |
neocortex | 7.90e-08 | 20 |
neural plate | 3.22e-07 | 82 |
presumptive neural plate | 3.22e-07 | 82 |
pre-chordal neural plate | 8.93e-07 | 61 |
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