FFCP PHASE1:Hg19::chr12:28284584..28284590,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:28284584..28284590,+|id=chr12:28284584..28284590,+|ontology_enrichment_celltype=CL:0002076!7.66e-29!43;CL:0002368!3.90e-26!13;CL:0000223!8.65e-22!59;CL:0000066!1.35e-17!254;CL:0002159!3.15e-17!13;CL:0002202!9.87e-14!9;CL:0002632!9.87e-14!9;CL:0002166!1.95e-12!3;CL:0002621!4.42e-12!3;CL:0000068!2.11e-11!3;CL:0000069!2.11e-11!3;CL:0000307!2.11e-11!3;CL:0000377!2.11e-11!3;CL:0000362!2.92e-11!8;CL:0002328!3.01e-11!3;CL:0000240!4.30e-10!6;CL:0000311!4.30e-10!6;CL:0000079!4.30e-10!6;CL:0000237!4.30e-10!6;CL:0000036!4.30e-10!6;CL:0000357!4.30e-10!6;CL:0000114!4.30e-10!6;CL:0002251!7.13e-10!21;CL:0002077!3.08e-09!33;CL:0000244!3.68e-09!4;CL:0000731!3.68e-09!4;CL:0000317!4.80e-08!2;CL:1000448!4.80e-08!2;CL:0002308!4.80e-08!2;CL:0002140!4.80e-08!2;CL:0000220!6.85e-08!246;CL:0002321!9.08e-08!248;CL:0000312!2.81e-07!5;CL:0000076!4.32e-07!62|ontology_enrichment_celltype_v019=CL:0002076;4.79e-22;42!CL:0002166;3.58e-20;3!CL:0002621;1.71e-19;3!CL:0002368;8.82e-17;13!CL:0002159;6.11e-16;14!CL:0000244;7.22e-15;4!CL:0000731;7.22e-15;4!CL:0002251;1.25e-10;20!CL:0000240;5.38e-10;6!CL:0000311;5.38e-10;6!CL:0000079;5.38e-10;6!CL:0000237;5.38e-10;6!CL:0002231;4.17e-09;3!CL:0000307;4.17e-09;3!CL:0002077;1.67e-07;34!CL:0002336;2.46e-07;1!CL:0002261;2.46e-07;1!CL:0002170;2.46e-07;1!CL:0000362;8.21e-07;9|ontology_enrichment_celltype_v019_2=CL:0002076,5.56e-26,42;CL:0002166,3.36e-20,3;CL:0002621,1.37e-19,3;CL:0000223,4.72e-18,58;CL:0002368,8.70e-17,13;CL:0002159,6.28e-16,14;CL:0000244,7.75e-15,4;CL:0000731,7.75e-15,4;CL:0000066,2.67e-14,253;CL:0002251,1.20e-10,20;CL:0000240,5.55e-10,6;CL:0000311,5.55e-10,6;CL:0000079,5.55e-10,6;CL:0000237,5.55e-10,6;CL:0000036,5.55e-10,6;CL:0000357,5.55e-10,6;CL:0000114,5.55e-10,6;CL:0002231,4.73e-09,3;CL:0000068,5.35e-09,3;CL:0000069,5.35e-09,3;CL:0000307,5.35e-09,3;CL:0000377,5.35e-09,3;CL:0002077,2.35e-08,34;CL:0002336,2.63e-07,1;CL:0002261,2.63e-07,1;CL:0002170,2.63e-07,1;CL:0000362,8.55e-07,9|ontology_enrichment_development_v019=CL:0000357;5.38e-10;6!CL:0000114;5.38e-10;6!CL:0000377;4.17e-09;3!CL:0000223;3.72e-08;58|ontology_enrichment_disease=DOID:1749!4.06e-09!14|ontology_enrichment_disease_v019=DOID:1749;2.96e-11;14|ontology_enrichment_disease_v019_2=DOID:1749,2.96e-11,14|ontology_enrichment_uberon=UBERON:0001949!4.42e-12!3;UBERON:0000365!5.40e-12!5;UBERON:0004815!3.01e-11!3;UBERON:0002031!3.01e-11!3;UBERON:0005910!5.31e-10!6;UBERON:0001708!2.01e-09!4;UBERON:0001704!2.01e-09!4;UBERON:0004119!9.75e-09!169;UBERON:0000925!9.75e-09!169;UBERON:0006595!9.75e-09!169;UBERON:0007196!1.36e-08!14;UBERON:0001558!1.36e-08!14;UBERON:0002185!1.52e-08!4;UBERON:0002419!4.80e-08!2;UBERON:0007771!4.80e-08!2;UBERON:0003297!4.80e-08!2;UBERON:0001821!4.80e-08!2;UBERON:0003487!4.80e-08!2;UBERON:0001820!4.80e-08!2;UBERON:0005089!4.80e-08!2;UBERON:0005088!4.80e-08!2;UBERON:0001004!6.14e-08!72;UBERON:0003729!3.94e-07!5|ontology_enrichment_uberon_v019=UBERON:0001949;1.71e-19;3!UBERON:0000486;1.93e-18;12!UBERON:0003729;1.27e-16;13!UBERON:0001708;2.85e-15;4!UBERON:0008895;2.85e-15;4!UBERON:0011159;2.54e-12;5!UBERON:0000365;5.32e-12;5!UBERON:0000344;1.25e-10;20!UBERON:0005910;4.40e-10;6!UBERON:0003929;1.19e-08;7!UBERON:0000161;5.18e-08;19!UBERON:0000166;5.18e-08;19!UBERON:0003350;1.26e-07;8!UBERON:0001828;1.26e-07;8!UBERON:0000165;1.94e-07;28!UBERON:0003343;4.90e-07;4!UBERON:0004785;4.90e-07;4!UBERON:0010371;5.08e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.37e-19,3;UBERON:0003729,1.19e-16,13;UBERON:0001708,2.72e-15,4;UBERON:0008895,2.72e-15,4;UBERON:0011159,2.45e-12,5;UBERON:0000365,5.63e-12,5;UBERON:0000344,1.20e-10,20;UBERON:0010188,2.32e-10,6;UBERON:0002539,2.32e-10,6;UBERON:0008816,2.32e-10,6;UBERON:0005910,4.61e-10,6;UBERON:0003102,1.47e-09,99;UBERON:0001004,3.59e-08,74;UBERON:0004119,1.15e-07,160;UBERON:0000925,1.15e-07,160;UBERON:0006595,1.15e-07,160;UBERON:0003350,1.16e-07,8;UBERON:0001828,1.16e-07,8;UBERON:0000033,1.19e-07,56;UBERON:0000161,1.37e-07,36;UBERON:0000165,3.54e-07,29;UBERON:0000930,3.54e-07,29;UBERON:0003343,4.91e-07,4;UBERON:0004785,4.91e-07,4;UBERON:0000166,6.60e-07,22;UBERON:0000153,8.95e-07,62;UBERON:0007811,8.95e-07,62|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,10.6370987030426,2.86804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.24351883696929,3.37205259772859,0.703702806881416,1.29623823221941,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,2.81201501960331,22.0056587940506,9.78248170972467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6065841139427,1.10497186723076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0.650060246036521,0,0,0,0,0,0,0,0,0,9.75181000629771,2.88285101047659,4.8492830747942,0.708104465988849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4055528181378,0.670302275535787,1.08890984861323,0,3.01353760869861,0,1.33029046061003,10.5672764095201,0,0,0,0,0,0,0,0,0,0,8.33136734335508,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48323486804084,0,0,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.568967241427498,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0.627921025580099,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,9.78519724646052,6.17819694732514,3.55034628318548,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0.39961921916426,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,4.35454082023081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76954585021611,2.20114318226015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59113109462346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.21348117586025,14.8215846120591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162806537221949,0,0,0,0,0,0,0,0,0|short_description=p@chr12:28284584..28284590,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:28284584..28284590,+ | |||
|id=chr12:28284584..28284590,+ | |||
|ontology_enrichment_celltype=CL:0002076!7.66e-29!43;CL:0002368!3.90e-26!13;CL:0000223!8.65e-22!59;CL:0000066!1.35e-17!254;CL:0002159!3.15e-17!13;CL:0002202!9.87e-14!9;CL:0002632!9.87e-14!9;CL:0002166!1.95e-12!3;CL:0002621!4.42e-12!3;CL:0000068!2.11e-11!3;CL:0000069!2.11e-11!3;CL:0000307!2.11e-11!3;CL:0000377!2.11e-11!3;CL:0000362!2.92e-11!8;CL:0002328!3.01e-11!3;CL:0000240!4.30e-10!6;CL:0000311!4.30e-10!6;CL:0000079!4.30e-10!6;CL:0000237!4.30e-10!6;CL:0000036!4.30e-10!6;CL:0000357!4.30e-10!6;CL:0000114!4.30e-10!6;CL:0002251!7.13e-10!21;CL:0002077!3.08e-09!33;CL:0000244!3.68e-09!4;CL:0000731!3.68e-09!4;CL:0000317!4.80e-08!2;CL:1000448!4.80e-08!2;CL:0002308!4.80e-08!2;CL:0002140!4.80e-08!2;CL:0000220!6.85e-08!246;CL:0002321!9.08e-08!248;CL:0000312!2.81e-07!5;CL:0000076!4.32e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.79e-22;42!CL:0002166;3.58e-20;3!CL:0002621;1.71e-19;3!CL:0002368;8.82e-17;13!CL:0002159;6.11e-16;14!CL:0000244;7.22e-15;4!CL:0000731;7.22e-15;4!CL:0002251;1.25e-10;20!CL:0000240;5.38e-10;6!CL:0000311;5.38e-10;6!CL:0000079;5.38e-10;6!CL:0000237;5.38e-10;6!CL:0002231;4.17e-09;3!CL:0000307;4.17e-09;3!CL:0002077;1.67e-07;34!CL:0002336;2.46e-07;1!CL:0002261;2.46e-07;1!CL:0002170;2.46e-07;1!CL:0000362;8.21e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.56e-26,42;CL:0002166,3.36e-20,3;CL:0002621,1.37e-19,3;CL:0000223,4.72e-18,58;CL:0002368,8.70e-17,13;CL:0002159,6.28e-16,14;CL:0000244,7.75e-15,4;CL:0000731,7.75e-15,4;CL:0000066,2.67e-14,253;CL:0002251,1.20e-10,20;CL:0000240,5.55e-10,6;CL:0000311,5.55e-10,6;CL:0000079,5.55e-10,6;CL:0000237,5.55e-10,6;CL:0000036,5.55e-10,6;CL:0000357,5.55e-10,6;CL:0000114,5.55e-10,6;CL:0002231,4.73e-09,3;CL:0000068,5.35e-09,3;CL:0000069,5.35e-09,3;CL:0000307,5.35e-09,3;CL:0000377,5.35e-09,3;CL:0002077,2.35e-08,34;CL:0002336,2.63e-07,1;CL:0002261,2.63e-07,1;CL:0002170,2.63e-07,1;CL:0000362,8.55e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;5.38e-10;6!CL:0000114;5.38e-10;6!CL:0000377;4.17e-09;3!CL:0000223;3.72e-08;58 | |||
|ontology_enrichment_disease=DOID:1749!4.06e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.96e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.96e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0001949!4.42e-12!3;UBERON:0000365!5.40e-12!5;UBERON:0004815!3.01e-11!3;UBERON:0002031!3.01e-11!3;UBERON:0005910!5.31e-10!6;UBERON:0001708!2.01e-09!4;UBERON:0001704!2.01e-09!4;UBERON:0004119!9.75e-09!169;UBERON:0000925!9.75e-09!169;UBERON:0006595!9.75e-09!169;UBERON:0007196!1.36e-08!14;UBERON:0001558!1.36e-08!14;UBERON:0002185!1.52e-08!4;UBERON:0002419!4.80e-08!2;UBERON:0007771!4.80e-08!2;UBERON:0003297!4.80e-08!2;UBERON:0001821!4.80e-08!2;UBERON:0003487!4.80e-08!2;UBERON:0001820!4.80e-08!2;UBERON:0005089!4.80e-08!2;UBERON:0005088!4.80e-08!2;UBERON:0001004!6.14e-08!72;UBERON:0003729!3.94e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.71e-19;3!UBERON:0000486;1.93e-18;12!UBERON:0003729;1.27e-16;13!UBERON:0001708;2.85e-15;4!UBERON:0008895;2.85e-15;4!UBERON:0011159;2.54e-12;5!UBERON:0000365;5.32e-12;5!UBERON:0000344;1.25e-10;20!UBERON:0005910;4.40e-10;6!UBERON:0003929;1.19e-08;7!UBERON:0000161;5.18e-08;19!UBERON:0000166;5.18e-08;19!UBERON:0003350;1.26e-07;8!UBERON:0001828;1.26e-07;8!UBERON:0000165;1.94e-07;28!UBERON:0003343;4.90e-07;4!UBERON:0004785;4.90e-07;4!UBERON:0010371;5.08e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.37e-19,3;UBERON:0003729,1.19e-16,13;UBERON:0001708,2.72e-15,4;UBERON:0008895,2.72e-15,4;UBERON:0011159,2.45e-12,5;UBERON:0000365,5.63e-12,5;UBERON:0000344,1.20e-10,20;UBERON:0010188,2.32e-10,6;UBERON:0002539,2.32e-10,6;UBERON:0008816,2.32e-10,6;UBERON:0005910,4.61e-10,6;UBERON:0003102,1.47e-09,99;UBERON:0001004,3.59e-08,74;UBERON:0004119,1.15e-07,160;UBERON:0000925,1.15e-07,160;UBERON:0006595,1.15e-07,160;UBERON:0003350,1.16e-07,8;UBERON:0001828,1.16e-07,8;UBERON:0000033,1.19e-07,56;UBERON:0000161,1.37e-07,36;UBERON:0000165,3.54e-07,29;UBERON:0000930,3.54e-07,29;UBERON:0003343,4.91e-07,4;UBERON:0004785,4.91e-07,4;UBERON:0000166,6.60e-07,22;UBERON:0000153,8.95e-07,62;UBERON:0007811,8.95e-07,62 | |||
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|short_description=p@chr12:28284584..28284590,+ | |||
}} |
Revision as of 22:21, 10 September 2013
Short description: | p@chr12:28284584..28284590, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:28284584..28284590, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.56e-26 | 42 |
epithelial cell of Malassez | 3.36e-20 | 3 |
gingival epithelial cell | 1.37e-19 | 3 |
endodermal cell | 4.72e-18 | 58 |
respiratory epithelial cell | 8.70e-17 | 13 |
general ecto-epithelial cell | 6.28e-16 | 14 |
transitional epithelial cell | 7.75e-15 | 4 |
urothelial cell | 7.75e-15 | 4 |
epithelial cell | 2.67e-14 | 253 |
epithelial cell of alimentary canal | 1.20e-10 | 20 |
stratified squamous epithelial cell | 5.55e-10 | 6 |
keratin accumulating cell | 5.55e-10 | 6 |
stratified epithelial cell | 5.55e-10 | 6 |
keratinizing barrier epithelial cell | 5.55e-10 | 6 |
epithelial fate stem cell | 5.55e-10 | 6 |
stratified epithelial stem cell | 5.55e-10 | 6 |
surface ectodermal cell | 5.55e-10 | 6 |
epithelial cell of prostate | 4.73e-09 | 3 |
duct epithelial cell | 5.35e-09 | 3 |
branched duct epithelial cell | 5.35e-09 | 3 |
tracheal epithelial cell | 5.35e-09 | 3 |
tracheoblast | 5.35e-09 | 3 |
ecto-epithelial cell | 2.35e-08 | 34 |
buccal mucosa cell | 2.63e-07 | 1 |
endothelial cell of viscerocranial mucosa | 2.63e-07 | 1 |
keratinized cell of the oral mucosa | 2.63e-07 | 1 |
epidermal cell | 8.55e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.37e-19 | 3 |
mouth mucosa | 1.19e-16 | 13 |
jaw skeleton | 2.72e-15 | 4 |
splanchnocranium | 2.72e-15 | 4 |
primary subdivision of cranial skeletal system | 2.45e-12 | 5 |
urothelium | 5.63e-12 | 5 |
mucosa | 1.20e-10 | 20 |
protuberance | 2.32e-10 | 6 |
pharyngeal arch | 2.32e-10 | 6 |
embryonic head | 2.32e-10 | 6 |
transitional epithelium | 4.61e-10 | 6 |
surface structure | 1.47e-09 | 99 |
respiratory system | 3.59e-08 | 74 |
endoderm-derived structure | 1.15e-07 | 160 |
endoderm | 1.15e-07 | 160 |
presumptive endoderm | 1.15e-07 | 160 |
epithelium of mucosa | 1.16e-07 | 8 |
gingiva | 1.16e-07 | 8 |
head | 1.19e-07 | 56 |
orifice | 1.37e-07 | 36 |
mouth | 3.54e-07 | 29 |
stomodeum | 3.54e-07 | 29 |
mucosa of oral region | 4.91e-07 | 4 |
respiratory system mucosa | 4.91e-07 | 4 |
oral opening | 6.60e-07 | 22 |
anterior region of body | 8.95e-07 | 62 |
craniocervical region | 8.95e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.96e-11 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.