FFCP PHASE1:Hg19::chr12:15699302..15699354,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5800|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9678|TSSclassifier=N|UniProt=Q9UBF0,Q9UBT5|association_with_transcript=16bp_to_ENST00000442921,ENST00000445537,ENST00000542557,ENST00000544244,uc001rcx.1,uc001rcy.1,uc001rcz.1,uc001rda.1_5end|coexpression_cluster_id=C54|description=CAGE_peak_3_at_PTPRO_5end|id=chr12:15699302..15699354,+|ontology_enrichment_celltype=CL:0002009!4.81e-45!65;CL:0002194!4.29e-43!63;CL:0000576!4.29e-43!63;CL:0000040!4.29e-43!63;CL:0000559!4.29e-43!63;CL:0000738!2.02e-41!140;CL:0002087!7.27e-40!119;CL:0000557!1.64e-39!71;CL:0000839!8.03e-37!70;CL:0000766!3.53e-35!76;CL:0002031!4.85e-35!124;CL:0000037!6.71e-34!172;CL:0000566!6.71e-34!172;CL:0002032!4.29e-31!165;CL:0000837!4.29e-31!165;CL:0000988!2.22e-30!182;CL:0002057!3.39e-30!42;CL:0000763!2.16e-29!112;CL:0000049!2.16e-29!112;CL:0000860!2.89e-27!45;CL:0000451!6.04e-14!10;CL:0000990!4.05e-12!8;CL:0000236!5.71e-11!14;CL:0000945!3.14e-10!24;CL:0000826!3.14e-10!24;CL:0002393!4.92e-09!9;CL:0002397!4.92e-09!9;CL:0000840!1.97e-08!5;CL:0001029!1.97e-08!5;CL:0000453!3.88e-07!5|ontology_enrichment_celltype_v019=CL:0000451;2.90e-22;10!CL:0000990;3.27e-22;8!CL:0000235;9.04e-20;6!CL:0000576;2.46e-18;48!CL:0000473;2.21e-16;39!CL:0000234;2.21e-16;39!CL:0000766;3.96e-16;69!CL:0000236;1.36e-13;13!CL:0000840;1.51e-13;5!CL:0000738;1.79e-12;136!CL:0000875;1.88e-10;3!CL:0002396;1.88e-10;3!CL:0000453;2.02e-10;5!CL:0002619;5.89e-10;3!CL:0000945;1.84e-08;24!CL:0002393;2.22e-08;6!CL:0002397;2.22e-08;6!CL:0000860;4.65e-08;33!CL:0002057;4.65e-08;33!CL:0002087;9.95e-08;104!CL:0000763;6.19e-07;100|ontology_enrichment_celltype_v019_2=CL:0002009,3.55e-52,61;CL:0002194,4.22e-51,59;CL:0000576,4.22e-51,59;CL:0000040,4.22e-51,59;CL:0000559,4.22e-51,59;CL:0000557,1.01e-46,67;CL:0000839,8.88e-45,66;CL:0000738,1.83e-42,136;CL:0002087,1.42e-40,115;CL:0000766,2.51e-40,72;CL:0002031,1.94e-38,120;CL:0000037,1.03e-33,168;CL:0000763,2.58e-33,108;CL:0000049,2.58e-33,108;CL:0002032,2.22e-32,161;CL:0000837,2.22e-32,161;CL:0000988,2.22e-31,177;CL:0000473,2.54e-30,48;CL:0000234,2.54e-30,48;CL:0000451,2.53e-22,10;CL:0000990,4.12e-22,8;CL:0000235,1.18e-19,6;CL:0000860,2.50e-18,42;CL:0002057,2.50e-18,42;CL:0002393,2.52e-16,9;CL:0002397,2.52e-16,9;CL:0000840,2.24e-13,5;CL:0001029,2.24e-13,5;CL:0000236,8.41e-13,14;CL:0000875,1.51e-10,3;CL:0002396,1.51e-10,3;CL:0000453,2.13e-10,5;CL:0002619,3.98e-10,3;CL:0000134,1.05e-09,354;CL:0002320,2.71e-09,361;CL:0000945,1.19e-08,24;CL:0000826,1.19e-08,24;CL:0000219,7.48e-08,386|ontology_enrichment_development_v019=CL:0002057;1.86e-12;42!CL:0000049;1.91e-11;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.93e-42!102;UBERON:0003061!1.93e-42!102;UBERON:0002193!4.25e-39!112;UBERON:0002371!1.94e-34!80;UBERON:0001474!1.26e-30!86;UBERON:0002405!3.28e-26!115;UBERON:0007023!6.18e-26!115;UBERON:0004765!3.71e-25!101;UBERON:0001434!3.71e-25!101;UBERON:0003081!1.13e-12!216;UBERON:0002204!3.60e-10!167;UBERON:0001049!3.31e-08!57;UBERON:0005068!3.31e-08!57;UBERON:0006241!3.31e-08!57;UBERON:0007135!3.31e-08!57;UBERON:0002780!4.94e-07!41;UBERON:0001890!4.94e-07!41;UBERON:0006240!4.94e-07!41;UBERON:0002020!7.23e-07!34;UBERON:0003528!7.23e-07!34;UBERON:0000479!9.22e-07!787;UBERON:0003080!9.78e-07!42|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.39e-44,98;UBERON:0003061,4.39e-44,98;UBERON:0002371,1.10e-42,76;UBERON:0002193,5.00e-39,108;UBERON:0001474,6.85e-39,82;UBERON:0002405,1.39e-37,93;UBERON:0004765,1.29e-34,90;UBERON:0001434,3.16e-30,100;UBERON:0003081,4.22e-19,203;UBERON:0002204,1.78e-15,167;UBERON:0002384,2.12e-09,371;UBERON:0000926,3.76e-09,315;UBERON:0004120,3.76e-09,315;UBERON:0006603,3.76e-09,315|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.246301768349837,0.393553906568396,0.393364276848904,0,0.309632246632152,0,0,0,0,0,0,0.553995408531877,1.20326668482085,0,2.68698569087909,1.6194683300949,4.89393578504954,1.01778767145695,1.13362783106643,0.485168122375632,0.697287110717054,0.822335776043652,1.23882548358041,0.575384784644301,1.0246428261164,0.945928919554341,0.689491361473237,1.93645405075148,1.35426486594342,0.941211697713023,0.272906150057846,0.224723484445085,0.612167784741805,0.320929027076094,0,0.659702600373432,0.598390972864896,2.13112375266347,0.580418477257168,0,0.622822248995575,2.26123798731069,0,0.65156653411535,0,0.736555271975129,0.316462387440884,4.43636101255078,1.27562579979026,3.77385561915077,1.57260083605093,1.35159203557356,1.76798145366788,4.27519115611873,2.98375015798635,3.47061892152804,1.75996244461323,2.73069305631066,0.889509253863555,1.70692089026603,1.20118796110804,2.29900975981793,0.661044872784862,2.86216126360609,5.69212969109448,0.587237189370939,1.91136614062614,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5800 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9678 | |||
|TSSclassifier=N | |||
|UniProt=Q9UBF0,Q9UBT5 | |||
|association_with_transcript=16bp_to_ENST00000442921,ENST00000445537,ENST00000542557,ENST00000544244,uc001rcx.1,uc001rcy.1,uc001rcz.1,uc001rda.1_5end | |||
|coexpression_cluster_id=C54 | |||
|description=CAGE_peak_3_at_PTPRO_5end | |||
|id=chr12:15699302..15699354,+ | |||
|ontology_enrichment_celltype=CL:0002009!4.81e-45!65;CL:0002194!4.29e-43!63;CL:0000576!4.29e-43!63;CL:0000040!4.29e-43!63;CL:0000559!4.29e-43!63;CL:0000738!2.02e-41!140;CL:0002087!7.27e-40!119;CL:0000557!1.64e-39!71;CL:0000839!8.03e-37!70;CL:0000766!3.53e-35!76;CL:0002031!4.85e-35!124;CL:0000037!6.71e-34!172;CL:0000566!6.71e-34!172;CL:0002032!4.29e-31!165;CL:0000837!4.29e-31!165;CL:0000988!2.22e-30!182;CL:0002057!3.39e-30!42;CL:0000763!2.16e-29!112;CL:0000049!2.16e-29!112;CL:0000860!2.89e-27!45;CL:0000451!6.04e-14!10;CL:0000990!4.05e-12!8;CL:0000236!5.71e-11!14;CL:0000945!3.14e-10!24;CL:0000826!3.14e-10!24;CL:0002393!4.92e-09!9;CL:0002397!4.92e-09!9;CL:0000840!1.97e-08!5;CL:0001029!1.97e-08!5;CL:0000453!3.88e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000451;2.90e-22;10!CL:0000990;3.27e-22;8!CL:0000235;9.04e-20;6!CL:0000576;2.46e-18;48!CL:0000473;2.21e-16;39!CL:0000234;2.21e-16;39!CL:0000766;3.96e-16;69!CL:0000236;1.36e-13;13!CL:0000840;1.51e-13;5!CL:0000738;1.79e-12;136!CL:0000875;1.88e-10;3!CL:0002396;1.88e-10;3!CL:0000453;2.02e-10;5!CL:0002619;5.89e-10;3!CL:0000945;1.84e-08;24!CL:0002393;2.22e-08;6!CL:0002397;2.22e-08;6!CL:0000860;4.65e-08;33!CL:0002057;4.65e-08;33!CL:0002087;9.95e-08;104!CL:0000763;6.19e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,3.55e-52,61;CL:0002194,4.22e-51,59;CL:0000576,4.22e-51,59;CL:0000040,4.22e-51,59;CL:0000559,4.22e-51,59;CL:0000557,1.01e-46,67;CL:0000839,8.88e-45,66;CL:0000738,1.83e-42,136;CL:0002087,1.42e-40,115;CL:0000766,2.51e-40,72;CL:0002031,1.94e-38,120;CL:0000037,1.03e-33,168;CL:0000763,2.58e-33,108;CL:0000049,2.58e-33,108;CL:0002032,2.22e-32,161;CL:0000837,2.22e-32,161;CL:0000988,2.22e-31,177;CL:0000473,2.54e-30,48;CL:0000234,2.54e-30,48;CL:0000451,2.53e-22,10;CL:0000990,4.12e-22,8;CL:0000235,1.18e-19,6;CL:0000860,2.50e-18,42;CL:0002057,2.50e-18,42;CL:0002393,2.52e-16,9;CL:0002397,2.52e-16,9;CL:0000840,2.24e-13,5;CL:0001029,2.24e-13,5;CL:0000236,8.41e-13,14;CL:0000875,1.51e-10,3;CL:0002396,1.51e-10,3;CL:0000453,2.13e-10,5;CL:0002619,3.98e-10,3;CL:0000134,1.05e-09,354;CL:0002320,2.71e-09,361;CL:0000945,1.19e-08,24;CL:0000826,1.19e-08,24;CL:0000219,7.48e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.86e-12;42!CL:0000049;1.91e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.93e-42!102;UBERON:0003061!1.93e-42!102;UBERON:0002193!4.25e-39!112;UBERON:0002371!1.94e-34!80;UBERON:0001474!1.26e-30!86;UBERON:0002405!3.28e-26!115;UBERON:0007023!6.18e-26!115;UBERON:0004765!3.71e-25!101;UBERON:0001434!3.71e-25!101;UBERON:0003081!1.13e-12!216;UBERON:0002204!3.60e-10!167;UBERON:0001049!3.31e-08!57;UBERON:0005068!3.31e-08!57;UBERON:0006241!3.31e-08!57;UBERON:0007135!3.31e-08!57;UBERON:0002780!4.94e-07!41;UBERON:0001890!4.94e-07!41;UBERON:0006240!4.94e-07!41;UBERON:0002020!7.23e-07!34;UBERON:0003528!7.23e-07!34;UBERON:0000479!9.22e-07!787;UBERON:0003080!9.78e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.39e-44,98;UBERON:0003061,4.39e-44,98;UBERON:0002371,1.10e-42,76;UBERON:0002193,5.00e-39,108;UBERON:0001474,6.85e-39,82;UBERON:0002405,1.39e-37,93;UBERON:0004765,1.29e-34,90;UBERON:0001434,3.16e-30,100;UBERON:0003081,4.22e-19,203;UBERON:0002204,1.78e-15,167;UBERON:0002384,2.12e-09,371;UBERON:0000926,3.76e-09,315;UBERON:0004120,3.76e-09,315;UBERON:0006603,3.76e-09,315 | |||
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|short_description=p3@PTPRO | |||
}} |
Revision as of 21:58, 10 September 2013
Short description: | p3@PTPRO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PTPRO_5end |
Coexpression cluster: | C54_Dendritic_Macrophage_Monocytederived_CD14_leiomyoma_adipose_immature |
Association with transcript: | 16bp_to_ENST00000442921, ENST00000445537, ENST00000542557, ENST00000544244, uc001rcx.1, uc001rcy.1, uc001rcz.1, uc001rda.1_5end |
EntrezGene: | PTPRO |
HGNC: | 9678 |
UniProt: | Q9UBF0Q9UBT5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.39e-44 | 98 |
blood island | 4.39e-44 | 98 |
bone marrow | 1.10e-42 | 76 |
hemolymphoid system | 5.00e-39 | 108 |
bone element | 6.85e-39 | 82 |
immune system | 1.39e-37 | 93 |
skeletal element | 1.29e-34 | 90 |
skeletal system | 3.16e-30 | 100 |
lateral plate mesoderm | 4.22e-19 | 203 |
musculoskeletal system | 1.78e-15 | 167 |
connective tissue | 2.12e-09 | 371 |
mesoderm | 3.76e-09 | 315 |
mesoderm-derived structure | 3.76e-09 | 315 |
presumptive mesoderm | 3.76e-09 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.