FFCP PHASE1:Hg19::chr12:123465003..123465030,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51329|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18076|TSSclassifier=S|UniProt=B3V0L1|association_with_transcript=-11bp_to_ENST00000454885,uc009zxt.2_5end|description=CAGE_peak_10_at_ARL6IP4_5end|id=chr12:123465003..123465030,+|ontology_enrichment_celltype=CL:0000055!1.00e-21!180;CL:0000183!1.17e-14!59;CL:0002321!3.40e-14!248;CL:0000220!4.16e-14!246;CL:0000393!4.26e-14!60;CL:0000211!4.26e-14!60;CL:0000222!1.46e-13!119;CL:0000187!1.66e-12!54;CL:0000680!2.61e-12!57;CL:0000056!2.61e-12!57;CL:0000355!2.61e-12!57;CL:0000192!1.90e-10!42;CL:0000514!1.90e-10!42;CL:0000144!8.56e-08!625;CL:0000012!1.11e-07!682;CL:0000548!1.48e-07!679;CL:0000004!1.48e-07!679;CL:0000255!1.48e-07!679;CL:0000359!2.21e-07!32|ontology_enrichment_celltype_v019=CL:0000187;2.56e-07;55!CL:0000192;4.57e-07;43|ontology_enrichment_celltype_v019_2=CL:0000393,4.19e-13,61;CL:0000211,4.19e-13,61;CL:0000187,2.12e-11,55;CL:0000680,3.09e-11,58;CL:0000056,3.09e-11,58;CL:0000355,3.09e-11,58;CL:0000192,7.14e-10,43;CL:0000514,7.14e-10,43;CL:0000222,6.51e-09,121;CL:0002321,2.35e-07,250|ontology_enrichment_development_v019=CL:0000514;4.57e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!7.25e-13!312;UBERON:0000483!2.14e-12!309;UBERON:0000475!5.79e-10!365;UBERON:0001134!6.67e-10!61;UBERON:0002036!6.67e-10!61;UBERON:0003082!6.67e-10!61;UBERON:0005256!1.64e-09!143;UBERON:0002385!1.90e-09!63;UBERON:0001015!1.90e-09!63;UBERON:0000383!1.90e-09!63;UBERON:0000914!2.62e-09!83;UBERON:0002329!2.62e-09!83;UBERON:0003077!2.62e-09!83;UBERON:0003059!2.62e-09!83;UBERON:0007282!2.62e-09!83;UBERON:0009618!2.62e-09!83;UBERON:0007285!2.62e-09!83;UBERON:0002049!3.13e-09!79;UBERON:0007798!3.13e-09!79;UBERON:0004290!5.74e-09!70;UBERON:0000486!9.53e-09!82;UBERON:0000490!1.48e-08!138;UBERON:0000481!4.46e-08!347;UBERON:0004872!1.55e-07!84;UBERON:0003914!3.61e-07!118;UBERON:0000477!4.86e-07!286;UBERON:0000025!8.55e-07!194;UBERON:0000055!9.94e-07!69|ontology_enrichment_uberon_v019=UBERON:0002113;9.03e-07;24!UBERON:0011143;9.03e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.55e-11,78;UBERON:0001134,6.18e-10,62;UBERON:0002036,6.18e-10,62;UBERON:0003082,6.18e-10,62;UBERON:0002385,2.36e-09,64;UBERON:0001015,2.36e-09,64;UBERON:0000383,2.36e-09,64;UBERON:0003104,4.17e-09,160;UBERON:0009142,4.17e-09,160;UBERON:0002329,5.34e-09,71;UBERON:0003059,5.34e-09,71;UBERON:0007282,5.34e-09,71;UBERON:0004290,5.34e-09,71;UBERON:0009618,5.34e-09,71;UBERON:0005256,7.23e-09,122;UBERON:0003077,9.48e-09,72;UBERON:0007285,9.48e-09,72;UBERON:0007524,1.65e-08,73;UBERON:0000486,4.06e-07,83;UBERON:0000490,5.64e-07,148|phase1_expression=0.363356758541113,0.428201047781966,0.563817616383885,0,0.893922188854576,0.872338524100369,0,0.631719873426831,0.522371256399677,1.72013755551056,3.48900583986214,1.52908960491121,0.527533956456907,0.123766352960047,0.662794751455832,0.672325146451775,1.20538905604795,0,0.975865597581014,1.60057375499824,1.63200552995402,1.25381888591235,1.14494394852423,0.958120975510189,1.12988375635323,0.229240217243854,0.164201178899891,0.157421562627358,0,0,0,1.83884244895785,0.6024118375565,0.369754010166788,0.232401601740905,0,0.293600439334847,0,0,0,0,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,0,0.263384084775077,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0.670700859703636,2.04580098949649,0.361439152384566,0.50133791063589,0.869079113764942,2.3858578411533,1.45990461090791,1.22895262313288,0.886917589850256,0.790513071238134,0.196468613246569,0,0.370784442784429,0,0.348259474598534,0.531831842075461,0,0,0,0.39752481473341,0.860234595106124,1.04142150482278,0,0.419499436209906,0.825354125820202,0.626984899610432,0.516833518338658,0,1.00416183829401,0.805658634218294,1.52054421143703,0,0.735326160691737,0,0.357198913136319,0.22452937262617,1.0135033243499,3.06633274931766,0.949265659568129,0.732806975721629,0,0,1.3082821564276,0.993943903390637,0.633152558322899,0.794455084879313,0.286836620748814,0.354668382198357,0.560677600142307,2.1349799145941,1.48000529050296,0.622422070799533,0.808264032418128,1.14423332179421,1.66493170409425,0.576175924479999,0.234321431833797,0.312160076830321,0,0.448346041655403,0.469737994575059,0.323745888736263,0.140450806702248,0.204154171254893,0.368502951935304,0.619954687054593,2.37600571456411,0.247266929278557,3.64064544775211,0.718618141816238,0,0,0.554128230968366,2.19488810440419,1.22595118319608,0.751190294532984,1.13432183160021,1.07633781413317,0.427114777637135,1.27159140695737,0.600182192168805,0.721367704669072,1.54584324027377,0.558350568994769,2.53164498361899,1.46155507741798,0.504867548488229,0.0920498986422993,0.484938170456436,1.065028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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51329 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18076 | |||
|TSSclassifier=S | |||
|UniProt=B3V0L1 | |||
|association_with_transcript=-11bp_to_ENST00000454885,uc009zxt.2_5end | |||
|description=CAGE_peak_10_at_ARL6IP4_5end | |||
|id=chr12:123465003..123465030,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.00e-21!180;CL:0000183!1.17e-14!59;CL:0002321!3.40e-14!248;CL:0000220!4.16e-14!246;CL:0000393!4.26e-14!60;CL:0000211!4.26e-14!60;CL:0000222!1.46e-13!119;CL:0000187!1.66e-12!54;CL:0000680!2.61e-12!57;CL:0000056!2.61e-12!57;CL:0000355!2.61e-12!57;CL:0000192!1.90e-10!42;CL:0000514!1.90e-10!42;CL:0000144!8.56e-08!625;CL:0000012!1.11e-07!682;CL:0000548!1.48e-07!679;CL:0000004!1.48e-07!679;CL:0000255!1.48e-07!679;CL:0000359!2.21e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000187;2.56e-07;55!CL:0000192;4.57e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.19e-13,61;CL:0000211,4.19e-13,61;CL:0000187,2.12e-11,55;CL:0000680,3.09e-11,58;CL:0000056,3.09e-11,58;CL:0000355,3.09e-11,58;CL:0000192,7.14e-10,43;CL:0000514,7.14e-10,43;CL:0000222,6.51e-09,121;CL:0002321,2.35e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;4.57e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!7.25e-13!312;UBERON:0000483!2.14e-12!309;UBERON:0000475!5.79e-10!365;UBERON:0001134!6.67e-10!61;UBERON:0002036!6.67e-10!61;UBERON:0003082!6.67e-10!61;UBERON:0005256!1.64e-09!143;UBERON:0002385!1.90e-09!63;UBERON:0001015!1.90e-09!63;UBERON:0000383!1.90e-09!63;UBERON:0000914!2.62e-09!83;UBERON:0002329!2.62e-09!83;UBERON:0003077!2.62e-09!83;UBERON:0003059!2.62e-09!83;UBERON:0007282!2.62e-09!83;UBERON:0009618!2.62e-09!83;UBERON:0007285!2.62e-09!83;UBERON:0002049!3.13e-09!79;UBERON:0007798!3.13e-09!79;UBERON:0004290!5.74e-09!70;UBERON:0000486!9.53e-09!82;UBERON:0000490!1.48e-08!138;UBERON:0000481!4.46e-08!347;UBERON:0004872!1.55e-07!84;UBERON:0003914!3.61e-07!118;UBERON:0000477!4.86e-07!286;UBERON:0000025!8.55e-07!194;UBERON:0000055!9.94e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;9.03e-07;24!UBERON:0011143;9.03e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.55e-11,78;UBERON:0001134,6.18e-10,62;UBERON:0002036,6.18e-10,62;UBERON:0003082,6.18e-10,62;UBERON:0002385,2.36e-09,64;UBERON:0001015,2.36e-09,64;UBERON:0000383,2.36e-09,64;UBERON:0003104,4.17e-09,160;UBERON:0009142,4.17e-09,160;UBERON:0002329,5.34e-09,71;UBERON:0003059,5.34e-09,71;UBERON:0007282,5.34e-09,71;UBERON:0004290,5.34e-09,71;UBERON:0009618,5.34e-09,71;UBERON:0005256,7.23e-09,122;UBERON:0003077,9.48e-09,72;UBERON:0007285,9.48e-09,72;UBERON:0007524,1.65e-08,73;UBERON:0000486,4.06e-07,83;UBERON:0000490,5.64e-07,148 | |||
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| |||
|short_description=p10@ARL6IP4 | |||
}} |
Revision as of 21:28, 10 September 2013
Short description: | p10@ARL6IP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_ARL6IP4_5end |
Coexpression cluster: | NA |
Association with transcript: | -11bp_to_ENST00000454885, uc009zxt.2_5end |
EntrezGene: | ARL6IP4 |
HGNC: | 18076 |
UniProt: | B3V0L1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.19e-13 | 61 |
electrically active cell | 4.19e-13 | 61 |
muscle cell | 2.12e-11 | 55 |
muscle precursor cell | 3.09e-11 | 58 |
myoblast | 3.09e-11 | 58 |
multi-potent skeletal muscle stem cell | 3.09e-11 | 58 |
smooth muscle cell | 7.14e-10 | 43 |
smooth muscle myoblast | 7.14e-10 | 43 |
mesodermal cell | 6.51e-09 | 121 |
embryonic cell | 2.35e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.55e-11 | 78 |
skeletal muscle tissue | 6.18e-10 | 62 |
striated muscle tissue | 6.18e-10 | 62 |
myotome | 6.18e-10 | 62 |
muscle tissue | 2.36e-09 | 64 |
musculature | 2.36e-09 | 64 |
musculature of body | 2.36e-09 | 64 |
mesenchyme | 4.17e-09 | 160 |
entire embryonic mesenchyme | 4.17e-09 | 160 |
somite | 5.34e-09 | 71 |
presomitic mesoderm | 5.34e-09 | 71 |
presumptive segmental plate | 5.34e-09 | 71 |
dermomyotome | 5.34e-09 | 71 |
trunk paraxial mesoderm | 5.34e-09 | 71 |
trunk mesenchyme | 7.23e-09 | 122 |
paraxial mesoderm | 9.48e-09 | 72 |
presumptive paraxial mesoderm | 9.48e-09 | 72 |
dense mesenchyme tissue | 1.65e-08 | 73 |
multilaminar epithelium | 4.06e-07 | 83 |
unilaminar epithelium | 5.64e-07 | 148 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.