FFCP PHASE1:Hg19::chr11:31822202..31822211,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5080|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8620|TSSclassifier=S|UniProt=G3V567|association_with_transcript=-8bp_to_ENST00000530373_5end|coexpression_cluster_id=C11|description=CAGE_peak_31_at_PAX6_5end|id=chr11:31822202..31822211,-|ontology_enrichment_celltype=CL:0000064!2.05e-15!3;CL:0005012!2.05e-15!3;CL:0000067!2.05e-15!3;CL:0002304!2.05e-15!3;CL:0000575!6.42e-07!2|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;3.27e-147;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004733!2.94e-33!12;UBERON:0002028!2.94e-33!12;UBERON:0007277!2.94e-33!12;UBERON:0004732!1.10e-30!13;UBERON:0003075!1.26e-26!86;UBERON:0007284!1.26e-26!86;UBERON:0003076!1.46e-26!15;UBERON:0003057!1.46e-26!15;UBERON:0002346!2.28e-25!90;UBERON:0002680!1.77e-20!9;UBERON:0001895!1.77e-20!9;UBERON:0010092!1.77e-20!9;UBERON:0000970!2.43e-19!20;UBERON:0002104!2.09e-18!21;UBERON:0002037!8.67e-18!6;UBERON:0006215!8.67e-18!6;UBERON:0000020!8.82e-17!23;UBERON:0001032!4.54e-16!24;UBERON:0004456!4.54e-16!24;UBERON:0001896!1.32e-15!3;UBERON:0005290!1.32e-15!3;UBERON:0010096!1.32e-15!3;UBERON:0000033!1.83e-15!123;UBERON:0001778!2.05e-15!3;UBERON:0001775!2.05e-15!3;UBERON:0000153!1.15e-14!129;UBERON:0007811!1.15e-14!129;UBERON:0001049!1.53e-14!57;UBERON:0005068!1.53e-14!57;UBERON:0006241!1.53e-14!57;UBERON:0007135!1.53e-14!57;UBERON:0000019!2.44e-14!19;UBERON:0000047!2.44e-14!19;UBERON:0004088!2.44e-14!19;UBERON:0003072!2.44e-14!19;UBERON:0003071!2.44e-14!19;UBERON:0004128!2.44e-14!19;UBERON:0002616!5.10e-14!59;UBERON:0005743!8.38e-14!86;UBERON:0002298!5.05e-13!8;UBERON:0001456!5.71e-13!21;UBERON:0001801!7.89e-13!14;UBERON:0004121!1.85e-12!169;UBERON:0000073!2.21e-12!94;UBERON:0001016!2.21e-12!94;UBERON:0000063!2.56e-12!97;UBERON:0000924!3.98e-12!173;UBERON:0006601!3.98e-12!173;UBERON:0001017!5.48e-12!82;UBERON:0000488!8.39e-12!4;UBERON:0000955!1.13e-11!69;UBERON:0006238!1.13e-11!69;UBERON:0003056!1.68e-10!61;UBERON:0007625!1.56e-09!11;UBERON:0005085!2.27e-09!29;UBERON:0007023!2.45e-08!115;UBERON:0002203!3.63e-08!6;UBERON:0001768!3.63e-08!6;UBERON:0001905!5.73e-07!2;UBERON:0002757!5.73e-07!2;UBERON:0010134!5.73e-07!2;UBERON:0002784!5.73e-07!2;UBERON:0005408!5.73e-07!2;UBERON:0001899!5.73e-07!2;UBERON:0002360!8.52e-07!2;UBERON:0000094!8.52e-07!2;UBERON:0007645!8.52e-07!2|ontology_enrichment_uberon_v019=UBERON:0002037;2.58e-74;6!UBERON:0002680;5.60e-50;9!UBERON:0001895;5.60e-50;9!UBERON:0004733;8.61e-38;12!UBERON:0002028;8.61e-38;12!UBERON:0004732;5.63e-35;13!UBERON:0000073;2.96e-09;53!UBERON:0002616;2.96e-09;53!UBERON:0001871;2.35e-08;6!UBERON:0001016;2.63e-08;83!UBERON:0000955;3.78e-07;68|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.58e-74,6;UBERON:0006215,2.58e-74,6;UBERON:0002680,5.60e-50,9;UBERON:0001895,5.60e-50,9;UBERON:0010092,5.60e-50,9;UBERON:0004733,8.61e-38,12;UBERON:0002028,8.61e-38,12;UBERON:0007277,8.61e-38,12;UBERON:0004732,5.63e-35,13;UBERON:0003076,1.81e-30,15;UBERON:0003057,1.81e-30,15;UBERON:0000073,1.70e-15,53;UBERON:0002616,1.70e-15,53;UBERON:0001049,9.92e-15,56;UBERON:0005068,9.92e-15,56;UBERON:0006241,9.92e-15,56;UBERON:0007135,9.92e-15,56;UBERON:0000955,3.68e-12,68;UBERON:0006238,3.68e-12,68;UBERON:0001017,2.17e-10,81;UBERON:0003075,2.17e-10,82;UBERON:0007284,2.17e-10,82;UBERON:0002346,5.98e-10,86;UBERON:0001016,1.88e-09,89;UBERON:0010371,2.22e-08,104;UBERON:0001871,2.35e-08,6;UBERON:0010314,8.99e-07,132|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.62908681585416,3.42795705786796,3.84211904639612,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0.2290731923318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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5080 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8620 | |||
|TSSclassifier=S | |||
|UniProt=G3V567 | |||
|association_with_transcript=-8bp_to_ENST00000530373_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_31_at_PAX6_5end | |||
|id=chr11:31822202..31822211,- | |||
|ontology_enrichment_celltype=CL:0000064!2.05e-15!3;CL:0005012!2.05e-15!3;CL:0000067!2.05e-15!3;CL:0002304!2.05e-15!3;CL:0000575!6.42e-07!2 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.27e-147;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004733!2.94e-33!12;UBERON:0002028!2.94e-33!12;UBERON:0007277!2.94e-33!12;UBERON:0004732!1.10e-30!13;UBERON:0003075!1.26e-26!86;UBERON:0007284!1.26e-26!86;UBERON:0003076!1.46e-26!15;UBERON:0003057!1.46e-26!15;UBERON:0002346!2.28e-25!90;UBERON:0002680!1.77e-20!9;UBERON:0001895!1.77e-20!9;UBERON:0010092!1.77e-20!9;UBERON:0000970!2.43e-19!20;UBERON:0002104!2.09e-18!21;UBERON:0002037!8.67e-18!6;UBERON:0006215!8.67e-18!6;UBERON:0000020!8.82e-17!23;UBERON:0001032!4.54e-16!24;UBERON:0004456!4.54e-16!24;UBERON:0001896!1.32e-15!3;UBERON:0005290!1.32e-15!3;UBERON:0010096!1.32e-15!3;UBERON:0000033!1.83e-15!123;UBERON:0001778!2.05e-15!3;UBERON:0001775!2.05e-15!3;UBERON:0000153!1.15e-14!129;UBERON:0007811!1.15e-14!129;UBERON:0001049!1.53e-14!57;UBERON:0005068!1.53e-14!57;UBERON:0006241!1.53e-14!57;UBERON:0007135!1.53e-14!57;UBERON:0000019!2.44e-14!19;UBERON:0000047!2.44e-14!19;UBERON:0004088!2.44e-14!19;UBERON:0003072!2.44e-14!19;UBERON:0003071!2.44e-14!19;UBERON:0004128!2.44e-14!19;UBERON:0002616!5.10e-14!59;UBERON:0005743!8.38e-14!86;UBERON:0002298!5.05e-13!8;UBERON:0001456!5.71e-13!21;UBERON:0001801!7.89e-13!14;UBERON:0004121!1.85e-12!169;UBERON:0000073!2.21e-12!94;UBERON:0001016!2.21e-12!94;UBERON:0000063!2.56e-12!97;UBERON:0000924!3.98e-12!173;UBERON:0006601!3.98e-12!173;UBERON:0001017!5.48e-12!82;UBERON:0000488!8.39e-12!4;UBERON:0000955!1.13e-11!69;UBERON:0006238!1.13e-11!69;UBERON:0003056!1.68e-10!61;UBERON:0007625!1.56e-09!11;UBERON:0005085!2.27e-09!29;UBERON:0007023!2.45e-08!115;UBERON:0002203!3.63e-08!6;UBERON:0001768!3.63e-08!6;UBERON:0001905!5.73e-07!2;UBERON:0002757!5.73e-07!2;UBERON:0010134!5.73e-07!2;UBERON:0002784!5.73e-07!2;UBERON:0005408!5.73e-07!2;UBERON:0001899!5.73e-07!2;UBERON:0002360!8.52e-07!2;UBERON:0000094!8.52e-07!2;UBERON:0007645!8.52e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.58e-74;6!UBERON:0002680;5.60e-50;9!UBERON:0001895;5.60e-50;9!UBERON:0004733;8.61e-38;12!UBERON:0002028;8.61e-38;12!UBERON:0004732;5.63e-35;13!UBERON:0000073;2.96e-09;53!UBERON:0002616;2.96e-09;53!UBERON:0001871;2.35e-08;6!UBERON:0001016;2.63e-08;83!UBERON:0000955;3.78e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.58e-74,6;UBERON:0006215,2.58e-74,6;UBERON:0002680,5.60e-50,9;UBERON:0001895,5.60e-50,9;UBERON:0010092,5.60e-50,9;UBERON:0004733,8.61e-38,12;UBERON:0002028,8.61e-38,12;UBERON:0007277,8.61e-38,12;UBERON:0004732,5.63e-35,13;UBERON:0003076,1.81e-30,15;UBERON:0003057,1.81e-30,15;UBERON:0000073,1.70e-15,53;UBERON:0002616,1.70e-15,53;UBERON:0001049,9.92e-15,56;UBERON:0005068,9.92e-15,56;UBERON:0006241,9.92e-15,56;UBERON:0007135,9.92e-15,56;UBERON:0000955,3.68e-12,68;UBERON:0006238,3.68e-12,68;UBERON:0001017,2.17e-10,81;UBERON:0003075,2.17e-10,82;UBERON:0007284,2.17e-10,82;UBERON:0002346,5.98e-10,86;UBERON:0001016,1.88e-09,89;UBERON:0010371,2.22e-08,104;UBERON:0001871,2.35e-08,6;UBERON:0010314,8.99e-07,132 | |||
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|short_description=p31@PAX6 | |||
}} |
Revision as of 17:26, 10 September 2013
Short description: | p31@PAX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_31_at_PAX6_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -8bp_to_ENST00000530373_5end |
EntrezGene: | PAX6 |
HGNC: | 8620 |
UniProt: | G3V567 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 2.58e-74 | 6 |
rhombic lip | 2.58e-74 | 6 |
regional part of metencephalon | 5.60e-50 | 9 |
metencephalon | 5.60e-50 | 9 |
future metencephalon | 5.60e-50 | 9 |
segmental subdivision of hindbrain | 8.61e-38 | 12 |
hindbrain | 8.61e-38 | 12 |
presumptive hindbrain | 8.61e-38 | 12 |
segmental subdivision of nervous system | 5.63e-35 | 13 |
posterior neural tube | 1.81e-30 | 15 |
chordal neural plate | 1.81e-30 | 15 |
regional part of nervous system | 1.70e-15 | 53 |
regional part of brain | 1.70e-15 | 53 |
neural tube | 9.92e-15 | 56 |
neural rod | 9.92e-15 | 56 |
future spinal cord | 9.92e-15 | 56 |
neural keel | 9.92e-15 | 56 |
brain | 3.68e-12 | 68 |
future brain | 3.68e-12 | 68 |
central nervous system | 2.17e-10 | 81 |
neural plate | 2.17e-10 | 82 |
presumptive neural plate | 2.17e-10 | 82 |
neurectoderm | 5.98e-10 | 86 |
nervous system | 1.88e-09 | 89 |
ecto-epithelium | 2.22e-08 | 104 |
temporal lobe | 2.35e-08 | 6 |
structure with developmental contribution from neural crest | 8.99e-07 | 132 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.