FFCP PHASE1:Hg19::chr10:123872391..123872432,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10579|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11523|TSSclassifier=S|UniProt=|association_with_transcript=-112bp_to_ENST00000493951_5end|description=CAGE_peak_2_at_TACC2_5end|id=chr10:123872391..123872432,+|ontology_enrichment_celltype=CL:0000066!1.61e-23!254;CL:0000223!1.95e-11!59;CL:0000220!3.30e-11!246;CL:0002321!3.63e-11!248;CL:0002076!2.32e-09!43|ontology_enrichment_celltype_v019=CL:0002076;5.72e-08;42|ontology_enrichment_celltype_v019_2=CL:0000066,3.88e-20,253;CL:0000223,1.23e-12,58;CL:0002076,4.01e-10,42;CL:0002321,5.64e-08,250|ontology_enrichment_development_v019=CL:0000223;5.01e-07;58|ontology_enrichment_disease=DOID:305!5.26e-11!106;DOID:0050687!6.96e-10!143;DOID:7!1.47e-08!39|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,3.74e-09,106;DOID:0050687,6.76e-08,143;DOID:7,9.72e-08,39|ontology_enrichment_uberon=UBERON:0004119!2.33e-17!169;UBERON:0000925!2.33e-17!169;UBERON:0006595!2.33e-17!169;UBERON:0000481!6.22e-17!347;UBERON:0003104!1.90e-16!238;UBERON:0009142!1.90e-16!238;UBERON:0001007!3.47e-16!155;UBERON:0001555!3.47e-16!155;UBERON:0007026!3.47e-16!155;UBERON:0004921!2.29e-13!129;UBERON:0004185!2.29e-13!129;UBERON:0002100!3.11e-13!216;UBERON:0000119!4.34e-13!312;UBERON:0000483!2.05e-12!309;UBERON:0005177!4.31e-12!107;UBERON:0000077!4.87e-12!130;UBERON:0001048!5.74e-12!168;UBERON:0000468!3.05e-11!659;UBERON:0000475!5.88e-11!365;UBERON:0003914!6.82e-11!118;UBERON:0000466!1.73e-10!126;UBERON:0000467!4.64e-10!625;UBERON:0000477!4.99e-10!286;UBERON:0005157!7.68e-10!51;UBERON:0000480!8.04e-10!626;UBERON:0004111!4.03e-09!241;UBERON:0001041!1.00e-08!98;UBERON:0005911!1.80e-08!82;UBERON:0009569!1.94e-08!113;UBERON:0005153!2.64e-08!37;UBERON:0000464!2.99e-08!104;UBERON:0000490!6.30e-08!138;UBERON:0003103!7.14e-08!69;UBERON:0005256!3.97e-07!143;UBERON:0000922!5.36e-07!612;UBERON:0001008!8.89e-07!45|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.19e-13,160;UBERON:0000925,1.19e-13,160;UBERON:0006595,1.19e-13,160;UBERON:0001007,3.45e-13,145;UBERON:0001555,3.45e-13,145;UBERON:0007026,3.45e-13,145;UBERON:0005177,9.93e-12,101;UBERON:0002100,1.94e-11,199;UBERON:0004921,8.35e-11,118;UBERON:0003914,9.91e-11,117;UBERON:0000119,1.79e-09,309;UBERON:0005157,4.23e-09,47;UBERON:0001048,4.28e-09,160;UBERON:0000483,7.00e-09,306;UBERON:0005153,5.37e-08,37;UBERON:0005911,6.92e-08,82;UBERON:0003103,7.08e-08,68;UBERON:0004111,9.14e-08,240;UBERON:0003104,5.57e-07,160;UBERON:0009142,5.57e-07,160;UBERON:0009569,9.57e-07,112|phase1_expression=0.363356758541113,1.07050261945492,1.12763523276777,0,0.893922188854576,0.872338524100369,2.53299878168311,0.631719873426831,2.35067065379855,2.45733936501509,6.97801167972428,0,1.31883489114227,1.60896258848061,1.32558950291166,0.672325146451775,3.01347264011988,2.19093027116212,1.46379839637152,1.35433163884467,2.65200898617529,1.25381888591235,1.71741592278634,1.91624195102038,0.87879847716362,0,0,0,0,0,0,3.67768489791571,3.91567694411725,8.13458822366933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2786256184353,3.2529523714611,2.00535164254356,2.462390822334,2.3858578411533,0.486634870302636,0.661743720148475,1.99556457716308,1.31752178539689,3.79839318943367,9.10738220731355,5.56176664176644,0,0.174129737299267,0.132957960518865,0,0,0,2.78267370313387,3.4409383804245,2.08284300964557,3.39184765154406,3.35599548967925,3.85165258716094,3.55291443112578,3.10100111003195,3.5576626268671,3.68192674041137,2.01414658554573,1.52054421143703,1.95249646038536,3.30896772311282,1.62028389576352,1.60739510911344,2.02076435363553,2.92789849256638,1.53316637465883,0.949265659568129,2.19842092716489,0,0,6.54141078213801,3.47880366186723,1.77282716330412,1.72131935057184,3.15520282823695,2.83734705758686,2.24271040056923,2.1349799145941,4.68668341992604,1.24484414159907,1.88594940897563,1.63461903113459,2.4217188423189,1.72852777344,3.51482147750695,2.80944069147288,4.56377457235559,0.896692083310806,2.3486899728753,1.29498355494505,0.561803226808994,1.02077085627447,2.08818339430006,3.51307655997603,1.18800285728205,1.23633464639278,5.46096817162816,4.31170885089743,1.0100166837244,2.25213335769535,3.04770527032601,0.877955241761676,2.75839016219118,1.05166641234618,0.907457465280168,2.87023417102179,0.640672166455702,1.27159140695737,2.70081986475962,0.92747276314595,1.8034837803194,1.30281799432113,1.68776332241266,1.07180705677318,3.5340728394176,0.920498986422993,0.646584227275248,2.84007674013291,1.71278566986988,1.3564847384839,1.35282597214308,1.36373060295417,0.860413786167011,1.34171076742555,1.06023814657188,1.2781333715647,1.24393266018445,0.756962552626885,0.36497735907583,0,0,1.38134921352481,0.464367928031979,0,1.8929088006375,2.02301628093722,0.723033089650446,1.7647035637183,1.30727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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10579 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11523 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-112bp_to_ENST00000493951_5end | |||
|description=CAGE_peak_2_at_TACC2_5end | |||
|id=chr10:123872391..123872432,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.61e-23!254;CL:0000223!1.95e-11!59;CL:0000220!3.30e-11!246;CL:0002321!3.63e-11!248;CL:0002076!2.32e-09!43 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.72e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.88e-20,253;CL:0000223,1.23e-12,58;CL:0002076,4.01e-10,42;CL:0002321,5.64e-08,250 | |||
|ontology_enrichment_development_v019=CL:0000223;5.01e-07;58 | |||
|ontology_enrichment_disease=DOID:305!5.26e-11!106;DOID:0050687!6.96e-10!143;DOID:7!1.47e-08!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.74e-09,106;DOID:0050687,6.76e-08,143;DOID:7,9.72e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.33e-17!169;UBERON:0000925!2.33e-17!169;UBERON:0006595!2.33e-17!169;UBERON:0000481!6.22e-17!347;UBERON:0003104!1.90e-16!238;UBERON:0009142!1.90e-16!238;UBERON:0001007!3.47e-16!155;UBERON:0001555!3.47e-16!155;UBERON:0007026!3.47e-16!155;UBERON:0004921!2.29e-13!129;UBERON:0004185!2.29e-13!129;UBERON:0002100!3.11e-13!216;UBERON:0000119!4.34e-13!312;UBERON:0000483!2.05e-12!309;UBERON:0005177!4.31e-12!107;UBERON:0000077!4.87e-12!130;UBERON:0001048!5.74e-12!168;UBERON:0000468!3.05e-11!659;UBERON:0000475!5.88e-11!365;UBERON:0003914!6.82e-11!118;UBERON:0000466!1.73e-10!126;UBERON:0000467!4.64e-10!625;UBERON:0000477!4.99e-10!286;UBERON:0005157!7.68e-10!51;UBERON:0000480!8.04e-10!626;UBERON:0004111!4.03e-09!241;UBERON:0001041!1.00e-08!98;UBERON:0005911!1.80e-08!82;UBERON:0009569!1.94e-08!113;UBERON:0005153!2.64e-08!37;UBERON:0000464!2.99e-08!104;UBERON:0000490!6.30e-08!138;UBERON:0003103!7.14e-08!69;UBERON:0005256!3.97e-07!143;UBERON:0000922!5.36e-07!612;UBERON:0001008!8.89e-07!45 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.19e-13,160;UBERON:0000925,1.19e-13,160;UBERON:0006595,1.19e-13,160;UBERON:0001007,3.45e-13,145;UBERON:0001555,3.45e-13,145;UBERON:0007026,3.45e-13,145;UBERON:0005177,9.93e-12,101;UBERON:0002100,1.94e-11,199;UBERON:0004921,8.35e-11,118;UBERON:0003914,9.91e-11,117;UBERON:0000119,1.79e-09,309;UBERON:0005157,4.23e-09,47;UBERON:0001048,4.28e-09,160;UBERON:0000483,7.00e-09,306;UBERON:0005153,5.37e-08,37;UBERON:0005911,6.92e-08,82;UBERON:0003103,7.08e-08,68;UBERON:0004111,9.14e-08,240;UBERON:0003104,5.57e-07,160;UBERON:0009142,5.57e-07,160;UBERON:0009569,9.57e-07,112 | |||
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| |||
|short_description=p2@TACC2 | |||
}} |
Revision as of 12:06, 10 September 2013
Short description: | p2@TACC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TACC2_5end |
Coexpression cluster: | NA |
Association with transcript: | -112bp_to_ENST00000493951_5end |
EntrezGene: | TACC2 |
HGNC: | 11523 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.88e-20 | 253 |
endodermal cell | 1.23e-12 | 58 |
endo-epithelial cell | 4.01e-10 | 42 |
embryonic cell | 5.64e-08 | 250 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.19e-13 | 160 |
endoderm | 1.19e-13 | 160 |
presumptive endoderm | 1.19e-13 | 160 |
digestive system | 3.45e-13 | 145 |
digestive tract | 3.45e-13 | 145 |
primitive gut | 3.45e-13 | 145 |
trunk region element | 9.93e-12 | 101 |
trunk | 1.94e-11 | 199 |
subdivision of digestive tract | 8.35e-11 | 118 |
epithelial tube | 9.91e-11 | 117 |
cell layer | 1.79e-09 | 309 |
epithelial fold | 4.23e-09 | 47 |
primordium | 4.28e-09 | 160 |
epithelium | 7.00e-09 | 306 |
epithelial bud | 5.37e-08 | 37 |
endo-epithelium | 6.92e-08 | 82 |
compound organ | 7.08e-08 | 68 |
anatomical conduit | 9.14e-08 | 240 |
mesenchyme | 5.57e-07 | 160 |
entire embryonic mesenchyme | 5.57e-07 | 160 |
subdivision of trunk | 9.57e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.74e-09 | 106 |
cell type cancer | 6.76e-08 | 143 |
disease of anatomical entity | 9.72e-08 | 39 |
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