FFCP PHASE1:Hg19::chr10:104155680..104155687,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4791|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7795|TSSclassifier=W|UniProt=|association_with_transcript=180bp_to_uc009xxc.2_5end|coexpression_cluster_id=C866|description=CAGE_peak_6_at_NFKB2_5end|id=chr10:104155680..104155687,+|ontology_enrichment_celltype=CL:0000860!1.67e-35!45;CL:0002057!4.43e-35!42;CL:0000766!5.63e-32!76;CL:0000738!8.07e-28!140;CL:0002009!2.41e-27!65;CL:0000557!9.94e-27!71;CL:0002194!1.41e-25!63;CL:0000576!1.41e-25!63;CL:0000040!1.41e-25!63;CL:0000559!1.41e-25!63;CL:0000839!2.24e-24!70;CL:0000763!2.95e-24!112;CL:0000049!2.95e-24!112;CL:0000988!1.47e-21!182;CL:0000037!5.82e-21!172;CL:0000566!5.82e-21!172;CL:0002032!1.53e-20!165;CL:0000837!1.53e-20!165;CL:0002087!6.93e-20!119;CL:0002031!1.03e-19!124;CL:0000094!3.39e-08!8;CL:0000081!4.86e-07!11;CL:0000080!7.70e-07!6|ontology_enrichment_celltype_v019=CL:0000860;8.28e-57;33!CL:0002057;8.28e-57;33!CL:0000473;3.68e-38;39!CL:0000234;3.68e-38;39!CL:0000576;3.22e-30;48!CL:0000766;2.16e-18;69!CL:0000775;4.26e-11;3!CL:0000081;4.63e-11;11!CL:0000094;6.57e-11;8!CL:0000453;1.57e-10;5!CL:0000738;3.98e-10;136!CL:0002087;7.94e-10;104!CL:0000763;3.24e-09;100!CL:0000771;2.59e-08;2!CL:0001014;1.32e-07;2!CL:0001016;1.32e-07;2|ontology_enrichment_celltype_v019_2=CL:0000860,3.10e-55,42;CL:0002057,3.10e-55,42;CL:0000473,2.29e-47,48;CL:0000234,2.29e-47,48;CL:0000766,7.85e-42,72;CL:0002009,1.02e-40,61;CL:0000557,2.09e-36,67;CL:0002194,2.32e-36,59;CL:0000576,2.32e-36,59;CL:0000040,2.32e-36,59;CL:0000559,2.32e-36,59;CL:0000763,9.73e-33,108;CL:0000049,9.73e-33,108;CL:0000839,9.07e-32,66;CL:0000738,7.78e-31,136;CL:0000988,8.80e-26,177;CL:0002032,4.80e-23,161;CL:0000837,4.80e-23,161;CL:0000037,4.88e-23,168;CL:0002031,2.01e-21,120;CL:0002087,5.11e-21,115;CL:0000775,4.20e-11,3;CL:0000081,4.64e-11,11;CL:0000094,6.52e-11,8;CL:0000453,1.67e-10,5;CL:0000771,2.60e-08,2;CL:0001014,1.24e-07,2;CL:0001016,1.24e-07,2;CL:0000134,1.54e-07,354;CL:0002320,3.34e-07,361|ontology_enrichment_development_v019=CL:0002057;4.05e-38;42!CL:0000049;7.07e-09;108!UBERON:0008947;4.95e-07;29|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!3.14e-24!112;UBERON:0002390!2.82e-23!102;UBERON:0003061!2.82e-23!102;UBERON:0002371!1.67e-21!80;UBERON:0001474!1.05e-20!86;UBERON:0002405!6.51e-18!115;UBERON:0004765!1.12e-17!101;UBERON:0001434!1.12e-17!101;UBERON:0001737!9.94e-10!9;UBERON:0002204!5.20e-09!167;UBERON:0003081!7.25e-07!216|ontology_enrichment_uberon_v019=UBERON:0001737;3.08e-26;9!UBERON:0001557;3.08e-26;9|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.32e-31,76;UBERON:0002390,2.50e-30,98;UBERON:0003061,2.50e-30,98;UBERON:0002193,1.35e-28,108;UBERON:0001474,2.28e-28,82;UBERON:0001737,1.46e-26,9;UBERON:0002405,5.20e-26,93;UBERON:0004765,3.57e-25,90;UBERON:0001434,6.75e-22,100;UBERON:0003081,6.99e-14,203;UBERON:0001557,1.05e-11,19;UBERON:0002204,4.68e-11,167;UBERON:0002384,9.53e-07,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,1.46062018077475,0,0,0,0,0,0,0,0.229240217243854,0.246301768349837,0.236132343941038,0.393364276848904,0.383829398097213,0.154816123316076,0,0.30120591877825,0,0,0.426507697462265,0,4.43196326825502,3.20871115952227,0.868043482863407,0,0,0,1.16318591023652,0.377875943688809,1.21292030593908,6.0431549595478,2.87817521615278,3.09706370895104,2.58923153089935,0.512321413058201,3.07426898855161,4.48169384957604,6.45484683583826,9.47985406160392,4.1413314699373,2.72906150057846,8.7642158933583,10.4068523406107,6.41858054152187,11.5080682643827,0.659702600373432,0.997318288108159,1.27867425159808,21.1852744198866,13.0498601678962,31.7639346987743,1.25624332628372,1.0429658368404,1.08594422352558,21.1889825921679,12.8897172595648,31.9627011315293,0.633765858935825,0.212604299965044,0.628975936525128,0.112328631146495,0.300353785683013,0.16072558669708,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0.786021525498329,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0.267540828089713,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0.324547393654683,0,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.495845917967,23.2668158488995,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0.247266929278557,0,0,0,0.125118519871964,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0,0,0,0,0,0,0,0,2.01121560067735,1.68584690078102,1.20505514941741,1.98529150918309,1.74303555273925,2.13543557199987,1.21348177344148,2.15843611637881,1.92373578473195,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0.117408694235822,0.721832238805369,2.31492756288305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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4791 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7795 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=180bp_to_uc009xxc.2_5end | |||
|coexpression_cluster_id=C866 | |||
|description=CAGE_peak_6_at_NFKB2_5end | |||
|id=chr10:104155680..104155687,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.67e-35!45;CL:0002057!4.43e-35!42;CL:0000766!5.63e-32!76;CL:0000738!8.07e-28!140;CL:0002009!2.41e-27!65;CL:0000557!9.94e-27!71;CL:0002194!1.41e-25!63;CL:0000576!1.41e-25!63;CL:0000040!1.41e-25!63;CL:0000559!1.41e-25!63;CL:0000839!2.24e-24!70;CL:0000763!2.95e-24!112;CL:0000049!2.95e-24!112;CL:0000988!1.47e-21!182;CL:0000037!5.82e-21!172;CL:0000566!5.82e-21!172;CL:0002032!1.53e-20!165;CL:0000837!1.53e-20!165;CL:0002087!6.93e-20!119;CL:0002031!1.03e-19!124;CL:0000094!3.39e-08!8;CL:0000081!4.86e-07!11;CL:0000080!7.70e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.28e-57;33!CL:0002057;8.28e-57;33!CL:0000473;3.68e-38;39!CL:0000234;3.68e-38;39!CL:0000576;3.22e-30;48!CL:0000766;2.16e-18;69!CL:0000775;4.26e-11;3!CL:0000081;4.63e-11;11!CL:0000094;6.57e-11;8!CL:0000453;1.57e-10;5!CL:0000738;3.98e-10;136!CL:0002087;7.94e-10;104!CL:0000763;3.24e-09;100!CL:0000771;2.59e-08;2!CL:0001014;1.32e-07;2!CL:0001016;1.32e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.10e-55,42;CL:0002057,3.10e-55,42;CL:0000473,2.29e-47,48;CL:0000234,2.29e-47,48;CL:0000766,7.85e-42,72;CL:0002009,1.02e-40,61;CL:0000557,2.09e-36,67;CL:0002194,2.32e-36,59;CL:0000576,2.32e-36,59;CL:0000040,2.32e-36,59;CL:0000559,2.32e-36,59;CL:0000763,9.73e-33,108;CL:0000049,9.73e-33,108;CL:0000839,9.07e-32,66;CL:0000738,7.78e-31,136;CL:0000988,8.80e-26,177;CL:0002032,4.80e-23,161;CL:0000837,4.80e-23,161;CL:0000037,4.88e-23,168;CL:0002031,2.01e-21,120;CL:0002087,5.11e-21,115;CL:0000775,4.20e-11,3;CL:0000081,4.64e-11,11;CL:0000094,6.52e-11,8;CL:0000453,1.67e-10,5;CL:0000771,2.60e-08,2;CL:0001014,1.24e-07,2;CL:0001016,1.24e-07,2;CL:0000134,1.54e-07,354;CL:0002320,3.34e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;4.05e-38;42!CL:0000049;7.07e-09;108!UBERON:0008947;4.95e-07;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.14e-24!112;UBERON:0002390!2.82e-23!102;UBERON:0003061!2.82e-23!102;UBERON:0002371!1.67e-21!80;UBERON:0001474!1.05e-20!86;UBERON:0002405!6.51e-18!115;UBERON:0004765!1.12e-17!101;UBERON:0001434!1.12e-17!101;UBERON:0001737!9.94e-10!9;UBERON:0002204!5.20e-09!167;UBERON:0003081!7.25e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.08e-26;9!UBERON:0001557;3.08e-26;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.32e-31,76;UBERON:0002390,2.50e-30,98;UBERON:0003061,2.50e-30,98;UBERON:0002193,1.35e-28,108;UBERON:0001474,2.28e-28,82;UBERON:0001737,1.46e-26,9;UBERON:0002405,5.20e-26,93;UBERON:0004765,3.57e-25,90;UBERON:0001434,6.75e-22,100;UBERON:0003081,6.99e-14,203;UBERON:0001557,1.05e-11,19;UBERON:0002204,4.68e-11,167;UBERON:0002384,9.53e-07,371 | |||
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| |||
|short_description=p6@NFKB2 | |||
}} |
Revision as of 11:25, 10 September 2013
Short description: | p6@NFKB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_NFKB2_5end |
Coexpression cluster: | C866_hairy_CD14_mycosis_cord_Eosinophils_CD14CD16_immature |
Association with transcript: | 180bp_to_uc009xxc.2_5end |
EntrezGene: | NFKB2 |
HGNC: | 7795 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.10e-55 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.10e-55 | 42 |
defensive cell | 2.29e-47 | 48 |
phagocyte | 2.29e-47 | 48 |
myeloid leukocyte | 7.85e-42 | 72 |
macrophage dendritic cell progenitor | 1.02e-40 | 61 |
granulocyte monocyte progenitor cell | 2.09e-36 | 67 |
monopoietic cell | 2.32e-36 | 59 |
monocyte | 2.32e-36 | 59 |
monoblast | 2.32e-36 | 59 |
promonocyte | 2.32e-36 | 59 |
myeloid cell | 9.73e-33 | 108 |
common myeloid progenitor | 9.73e-33 | 108 |
myeloid lineage restricted progenitor cell | 9.07e-32 | 66 |
leukocyte | 7.78e-31 | 136 |
hematopoietic cell | 8.80e-26 | 177 |
hematopoietic oligopotent progenitor cell | 4.80e-23 | 161 |
hematopoietic multipotent progenitor cell | 4.80e-23 | 161 |
hematopoietic stem cell | 4.88e-23 | 168 |
hematopoietic lineage restricted progenitor cell | 2.01e-21 | 120 |
nongranular leukocyte | 5.11e-21 | 115 |
neutrophil | 4.20e-11 | 3 |
blood cell | 4.64e-11 | 11 |
granulocyte | 6.52e-11 | 8 |
Langerhans cell | 1.67e-10 | 5 |
eosinophil | 2.60e-08 | 2 |
CD1a-positive Langerhans cell | 1.24e-07 | 2 |
immature CD1a-positive Langerhans cell | 1.24e-07 | 2 |
mesenchymal cell | 1.54e-07 | 354 |
connective tissue cell | 3.34e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.32e-31 | 76 |
hematopoietic system | 2.50e-30 | 98 |
blood island | 2.50e-30 | 98 |
hemolymphoid system | 1.35e-28 | 108 |
bone element | 2.28e-28 | 82 |
larynx | 1.46e-26 | 9 |
immune system | 5.20e-26 | 93 |
skeletal element | 3.57e-25 | 90 |
skeletal system | 6.75e-22 | 100 |
lateral plate mesoderm | 6.99e-14 | 203 |
upper respiratory tract | 1.05e-11 | 19 |
musculoskeletal system | 4.68e-11 | 167 |
connective tissue | 9.53e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.