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Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant204
  • db :UNIPROBE
  • Id :Arid5a_primary
  • name :SCI09
  • score :0.0566184251561548
  • External refs:
EntrezGene:10865
UniProt:10865

  • Internal refs:
EntrezGene:10865


Motif matrix
P0ACGT
10.1773227699616770.4283133108555550.229035782166470.165328137016298
20.1602218410046990.3245712922595730.03244463876218220.482762227973546
30.8522030188330670.02673267031472770.0739554645687440.0471088462834612
40.9612485395964730.003798315727822980.01011833907366290.0248348056020407
50.05653982204431130.004008129368916740.007877447084073320.931574601502699
60.9303305892146410.00513799875215420.007138200837539760.057393211195665
70.0199508646882490.01418882861792560.006788647954837050.959071658738988
80.04113163823968640.08750593548748090.03902466668573790.832337759587095
90.2339188113491090.0279351756326310.5196045205800820.218541492438178
100.3395774069027390.3529875456239340.1843159293977240.123119118075603
110.2853893353912890.134719141009350.2682894769181250.311602046681237
120.5721426928567430.07841759072420250.1904343212137620.159005395205293
130.2856689809713760.1840677400533080.2621988745463430.268064404428973
140.3427988482065450.2304599463413970.1539461204660920.272795084985967

Sub Motif Members