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NonredundantMotifs:176: Difference between revisions

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Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant176
  • db :UNIPROBE
  • Id :Rxra_secondary
  • name :SCI09
  • score :0.08144571495436231
  • External refs:
EntrezGene:6256
UniProt:6256

  • Internal refs:
EntrezGene:6256


Motif matrix
P0ACGT
10.1336735819170570.104721671178780.3636557932509180.397948953653245
20.218840506363650.519199746853350.1854270194654170.0765327273175827
30.311165029334310.1637492178625940.3846722006411040.140413552161992
40.199199907338530.5080341685356720.1377389352710920.155026988854706
50.3954811393036870.06219304064181640.494919107141590.047406712912906
60.4682107124375480.0614255012619090.008622836488862480.46174094981168
70.767827470686950.05761910772651540.01053245140302540.164020970183509
80.1480747710657330.03825000599695790.7569486474210750.0567265755162336
90.05340729811829640.06448397861915060.5267993403182240.355309382944329
100.06804581968002970.0981266845748230.1905312995160.643296196229147
110.09578916652137240.3199994918099670.1441233832815280.440087958387132
120.404234505864750.0724154075203490.4708695022108530.0524805844040487
130.2114269086262370.2368894212290620.21487888744950.336804782695201
140.3479878974452840.1557438644769220.2100093614735370.286258876604257
150.2830026990983810.3569312330181610.1609075728573270.199158495026131
160.2231665826889710.1812315387699260.2868587445792480.308743133961855

Sub Motif Members