NonredundantMotifs:123

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :non-redundant123
• db :SWISSREGULON
• Id :MSX1,2.p2
• name :MSX1,2
• score :0.047883748605647904
  
• External refs:

EntrezGene:MSX1
UniProt:MSX1

EntrezGene:2
UniProt:2

• Internal refs:

EntrezGene:MSX1

EntrezGene:2

Motif matrix
P0 A C G T 1 1.344309 25.356356 0.132901 3.664845 2 8.241792 6.841129 3.24168 12.17381 3 1.861585 5.693302 18.743901 4.199623 4 0.7003 2.252222 0.22213 27.323759 5 24.748232 0.14443 2.095333 3.510416 6 23.760977 1.927123 0 4.810311 7 9.227649 3.049867 3.302279 14.918616 8 0 0.478109 0 30.020302 9 1.772144 0.169098 27.579629 0.97754