Personal tools

NonredundantMotifs:46: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
m (Autoedit moved page MotifCluster2013March:Known46 to MotifCluster2013March:Non redundant46 without leaving a redirect: NSchange)
m (Autoedit moved page MotifCluster2013March:Non redundant46 to NonredundantMotifs:Motif46 without leaving a redirect: NSchange)
(No difference)

Revision as of 09:49, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant46
  • db :SWISSREGULON
  • Id :BPTF.p2
  • name :BPTF
  • score :1.6408128929467176
  • External refs:
EntrezGene:BPTF
UniProt:BPTF

  • Internal refs:
EntrezGene:BPTF


Motif matrix
POACGT
180.14154711.38614132.2921295.977397
265.28929936.04053815.92971212.537665
348.7565145.57025622.364413.106048
432.67411391.6293781.8464163.647307
5121.7331581.4403813.5477233.075952
661.71832754.0629640.62670613.389217
7128.65290901.1443050
8125.5172740.8610691.9579891.460882
920.11829497.6782517.6151384.385531
10115.63564911.2243571.6706511.266557
1148.33489260.5415721.74911519.171635
1284.5411955.30402633.965775.986223
1346.98154539.24527416.40982527.16057
1486.685417.66752921.43212214.012153

Sub Motif Members