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Revision as of 09:49, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant18
  • db :SWISSREGULON
  • Id :NHLH1,2.p2
  • name :NHLH1,2
  • score :1.4298438066596664
  • External refs:
EntrezGene:NHLH1
UniProt:NHLH1

EntrezGene:2
UniProt:2

  • Internal refs:
EntrezGene:NHLH1

EntrezGene:2


Motif matrix
POACGT
159.416752322.053167304.611028112.638872
2159.912019518.054959118.3858092.367032
319.3967277.502905551.647648000001150.172546
40.89733780.71744900000115.4098541.695186
5794.2657892.20362.250430
620.2136684.484537774.0216140000010
78.117062695.75444291.8178783.030437
841.5322277.57729399999995.353235674.257070000001
905.967935783.5638570000019.188027
107.808537580.880055119.76213190.269096
11119.2347714.811321421.96565252.708077
1220.482221346.782235255.499925175.955438

Sub Motif Members