Personal tools

NonredundantMotifs:199: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
m (Autoedit moved page MotifCluster2013March:Known199 to MotifCluster2013March:Non redundant199 without leaving a redirect: NSchange)
(No difference)

Revision as of 17:23, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant199
  • db :UNIPROBE
  • Id :Glis2_secondary
  • name :SCI09
  • score :0.020725320147180586
  • External refs:
EntrezGene:84662
UniProt:84662

  • Internal refs:
EntrezGene:84662


Motif matrix
P0ACGT
10.3657546197604660.225781804227540.09187076848379370.316592807528201
20.3432994071732130.1608764668917290.2069705902930010.288853535642058
30.0606787403223440.07203840600885420.09230788511741740.774974968551384
40.7134912870417380.06335028762131210.1370423620601490.0861160632768002
50.1745421550204810.08809451324606790.09474381561904230.642619516114408
60.09702628671496380.08502682088088560.1394745288724320.678472363531718
70.7100840716365980.0727229360940920.1288733613392130.0883196309300972
80.3696686532798510.1820920593984160.127499892283920.320739395037813
90.1811615487006910.1454912378362380.09368855532575580.579658658137315
100.71030759551770.06740722287051730.05464758970427650.167637591907506
110.6798119387010580.05822836901283810.08977337807676080.172186314209343
120.7057004195986040.1670701788182690.03389289889412050.0933365026890068
130.2178691061887280.1623309639632930.4609892959435430.158810633904437
140.4120951069124560.2138646761007690.220174356418170.153865860568606

Sub Motif Members