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Revision as of 17:23, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant91
  • db :UNIPROBE
  • Id :Rfx3_secondary
  • name :SCI09
  • score :0.11922538800456256
  • External refs:
EntrezGene:5991
UniProt:5991

  • Internal refs:
EntrezGene:5991


Motif matrix
P0ACGT
10.3145139060433930.2753519866964450.2576166044648680.152517502795295
20.1269387402709490.5982941241881770.1305756224325860.144191513108288
30.1022645012744580.1553336586780120.1779568765877440.564444963459786
40.1292882815321440.2826779869636890.3269898105221060.261043920982061
50.3181657629696540.227822979020130.175680858453750.278330399556466
60.1090192565258640.380838057238010.278327507573580.231815178662545
70.2261454221930510.2892063226280840.2913003519937520.193347903185114
80.03586289687252050.8443394058583520.07258187386888310.047215823400244
90.2237926034362460.1872435426414120.0880924585580750.500871395364267
100.03980021702899020.0296814046067280.02620116327971520.904317215084567
110.2982981158925070.03214739553891880.6547458517946340.0148086367739403
120.01472896226531830.02202332265853660.9448259018594780.0184218132166674
130.4851143592101430.00492490701300920.01378457428298620.496176159493862
140.03570750482704610.02038097151308230.2408036986718530.703107824988019
150.9511516248769460.0127380331303850.01788608106227470.0182242609303939
160.02371339764698310.9443938825086120.00953771047057110.0223550093738339
170.2910668511742280.3852054451768380.2323884350544780.0913392685944557
180.3403339976809230.1995880347064890.3115256973049290.148552270307658
190.1987133209139730.472138243472380.1783186795513080.15082975606234
200.3211553006894250.2699315792330060.3113010469522660.0976120731253035
210.4126457794196690.1952515290904510.2319503275510750.160152363938805
220.2971341243483310.1809281000355690.2503996849105010.271538090705599
230.1511691006063940.3053858698075820.3585735903379540.18487143924807

Sub Motif Members