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NonredundantMotifs:127: Difference between revisions

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|entrez_gene_id=6672
|entrez_gene_id=6672
|motif_cluster_2013_march_motif_members= /UNIPROBE:IRC900814_primary;SCI09~Sp100_primary;SCI09
|motif_cluster_2013_march_motif_members= /UNIPROBE:IRC900814_primary;SCI09~Sp100_primary;SCI09
|name=known127
|name=non-redundant127
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Sp100_primary
|representative_motif_id=Sp100_primary
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant127
  • db :UNIPROBE
  • Id :Sp100_primary
  • name :SCI09
  • score :0.033167907260417476
  • External refs:
EntrezGene:6672
UniProt:6672

  • Internal refs:
EntrezGene:6672


Motif matrix
P0ACGT
10.398738524956180.1308668349314740.3387555780799870.131639062032358
20.3206987967272740.0279750799630730.06346624400404440.587859879305609
30.1570152978057620.03158312895829510.04161123665652680.769790336579416
40.2713465726369280.1519344058073270.0388035289618290.537915492593916
50.2214184366765260.2417025461315570.1741448466275690.362734170564348
60.3127566965793210.3039798560257630.1664935045290140.216769942865901
70.002826102701203030.9870210336052460.007114816095290920.00303804759826029
80.002112450431868310.1216451218089680.8741287376880610.00211369007110284
90.08978125203854820.0888895304373630.5906128613586730.230716356165416
100.7779019573329290.08149351111649490.06108975231709660.0795147792334794
110.8722344636883420.01243427995659880.02504429523118770.0902869611238717
120.7074808986316620.04778155304980980.02869662513177260.216040923186756
130.4885522666977540.1359459548812750.09878977525733250.276712003163638
140.1878110049285950.1119041798072710.2082234881849580.492061327079177

Sub Motif Members