Personal tools

NonredundantMotifs:71: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;3.0896624472573873;16.79430379746835;4.558016877637143;13.368143459915627!2;8.810126582278482;5.38396624472576;1.7130801687763726;21.902953586497915!3;15.172995780590723;16.886075949367104;4.772151898734191;0.9789029535865001!4;24.96202531645569;4.037974683544292;0.0;8.810126582278482!5;3.1814345991561206;0.0;0.0;34.628691983122394!6;0.611814345991562;0.0;37.19831223628693;0.0!7;21.535864978902964;6.240506329113913;5.139240506329102;4.894514767932482!8;34.75105485232069;0.0;0.0;3.059071729957807!9;10.278481012658244;0.0;1.8354430379746827;25.69620253164559!10;33.28270042194093;0.0;1.223628691983124;3.303797468354431!11;9.911392405063294;0.0;0.0;27.898734177215207!12;20.189873417721536;0.0;5.873417721519001;11.746835443037964!13;6.301687763713096;11.808016877637147;4.955696202531666;14.744725738396628
|PWM=P0;A;C;G;T!1;0.411937175299342;0.172671332736327;0.20587195038275;0.20951954158158!2;0.171108520940362;0.496660326437858;0.132111221488979;0.200119931132801!3;0.848636810350877;0.0383383199445882;0.0186551802489098;0.0943696894556253!4;0.0227104857920406;0.0278851650629296;0.0322935833138911;0.917110765831139!5;0.0345381923219609;0.0176162763662484;0.0221841164924794;0.925661414819311!6;0.0600211034051851;0.807533941075992;0.0297263562300359;0.102718599288788!7;0.910428780576831;0.0164506223437565;0.0628620409040661;0.0102585561753462!8;0.0499703351708143;0.117801350939192;0.164018783488577;0.668209530401417!9;0.232806925711358;0.0932634390622581;0.568720072973861;0.105209562252523!10;0.417735041843669;0.187636202838869;0.16011482986719;0.234513925450272!11;0.264283831633299;0.335680358499784;0.203995050578312;0.196040759288605!12;0.524448839037564;0.203844472609763;0.113371061958023;0.158335626394649!13;0.196319785493594;0.287667372065113;0.277580504789393;0.2384323376519!14;0.227144161682586;0.276267396423563;0.368394372569987;0.128194069323864
|entrez_gene_id=5449
|entrez_gene_id=30812
|motif_cluster_2013_march_motif_members= /UNIPROBE:Sox8_secondary;SCI09~Sox17_secondary;SCI09 /HOCOMOCO:PIT1_f1~PO3F2_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PIT1_f1~PO3F2_si /UNIPROBE:Sox17_secondary;SCI09~Sox8_secondary;SCI09
|name=known71
|name=non-redundant71
|representative_motif_db=HOCOMOCO
|representative_motif_db=UNIPROBE
|representative_motif_id=PIT1_f1
|representative_motif_id=Sox8_secondary
|representative_motif_name=  
|representative_motif_name=SCI09
|score=0.06673532507808184
|score=0.05328855367929437
|uniprot_entry_name=PIT1_HUMAN
|uniprot_entry_name=SOX8_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant71
  • db :UNIPROBE
  • Id :Sox8_secondary
  • name :SCI09
  • score :0.05328855367929437
  • External refs:
EntrezGene:30812
UniProt:30812

  • Internal refs:
EntrezGene:30812


Motif matrix
P0ACGT
10.4119371752993420.1726713327363270.205871950382750.20951954158158
20.1711085209403620.4966603264378580.1321112214889790.200119931132801
30.8486368103508770.03833831994458820.01865518024890980.0943696894556253
40.02271048579204060.02788516506292960.03229358331389110.917110765831139
50.03453819232196090.01761627636624840.02218411649247940.925661414819311
60.06002110340518510.8075339410759920.02972635623003590.102718599288788
70.9104287805768310.01645062234375650.06286204090406610.0102585561753462
80.04997033517081430.1178013509391920.1640187834885770.668209530401417
90.2328069257113580.09326343906225810.5687200729738610.105209562252523
100.4177350418436690.1876362028388690.160114829867190.234513925450272
110.2642838316332990.3356803584997840.2039950505783120.196040759288605
120.5244488390375640.2038444726097630.1133710619580230.158335626394649
130.1963197854935940.2876673720651130.2775805047893930.2384323376519
140.2271441616825860.2762673964235630.3683943725699870.128194069323864

Sub Motif Members