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NonredundantMotifs:65: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.171801268021359;0.139044669546891;0.265726262551171;0.423427799880579!2;0.146596658867561;0.118316133720996;0.577770295308537;0.157316912102905!3;0.247220107940536;0.191958250197233;0.432934963748745;0.127886678113486!4;0.119276597932449;0.232190913824341;0.39478558232841;0.253746905914801!5;0.227546273197179;0.664337925307098;0.0169910812960097;0.0911247201997123!6;0.27129000948291;0.146818938031769;0.518707235663286;0.0631838168220354!7;0.693351081732599;0.120941898623978;0.0668632665649568;0.118843753078466!8;0.0414592676270053;0.895990133603803;0.0422530582604952;0.0202975405086965!9;0.0202975405086965;0.0422530582604952;0.895990133603803;0.0414592676270053!10;0.118843753078466;0.0668632665649568;0.120941898623978;0.693351081732599!11;0.0631838168220354;0.518707235663286;0.146818938031769;0.27129000948291!12;0.0911247201997123;0.0169910812960098;0.664337925307098;0.22754627319718!13;0.122588689281357;0.186958929807665;0.078274324956417;0.612178055954561!14;0.103039017771895;0.27471909730558;0.113320329609324;0.508921555313201!15;0.375945452081216;0.28903990386458;0.127861454685645;0.207153189368559!16;0.429988760669549;0.189119885668972;0.110126757054164;0.270764596607315
|PWM=P0;A;C;G;T!1;3.6923076923076996;3.6923076923076996;11.6923076923077;0.923076923076922!2;0.0;4.3076923076923;6.46153846153846;9.23076923076924!3;0.0;5.23076923076924;12.0;2.76923076923076!4;1.846153846153846;8.0;9.23076923076924;0.923076923076922!5;0.0;0.615384615384616;0.0;19.38461538461538!6;0.0;0.923076923076922;19.07692307692308;0.0!7;18.46153846153846;0.923076923076922;0.0;0.615384615384616!8;0.0;20.0;0.0;0.0!9;0.0;0.0;20.0;0.0!10;0.0;0.0;0.0;20.0!11;0.0;1.846153846153846;18.15384615384616;0.0!12;1.846153846153846;0.0;18.15384615384616;0.0
|entrez_gene_id=10691
|entrez_gene_id=22926
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ATF6.p2~XBP1.p3 /UNIPROBE:Gmeb1_secondary;SCI09 /HOCOMOCO:XBP1_f1~ATF6A_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ATF6A_si~XBP1_f1 /SWISSREGULON:ATF6.p2~XBP1.p3 /UNIPROBE:Gmeb1_secondary;SCI09
|name=known65
|name=non-redundant65
|representative_motif_db=UNIPROBE
|representative_motif_db=HOCOMOCO
|representative_motif_id=Gmeb1_secondary
|representative_motif_id=ATF6A_si
|representative_motif_name=SCI09
|representative_motif_name=  
|score=0.48838353073623125
|score=0.19333391617419116
|uniprot_entry_name=GMEB1_HUMAN
|uniprot_entry_name=ATF6A_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant65
  • db :HOCOMOCO
  • Id :ATF6A_si
  • name  :
  • score :0.19333391617419116
  • External refs:
EntrezGene:22926
UniProt:22926

  • Internal refs:
EntrezGene:22926


Motif matrix
P0ACGT
13.69230769230769963.692307692307699611.69230769230770.923076923076922
20.04.30769230769236.461538461538469.23076923076924
30.05.2307692307692412.02.76923076923076
41.8461538461538468.09.230769230769240.923076923076922
50.00.6153846153846160.019.38461538461538
60.00.92307692307692219.076923076923080.0
718.461538461538460.9230769230769220.00.615384615384616
80.020.00.00.0
90.00.020.00.0
100.00.00.020.0
110.01.84615384615384618.153846153846160.0
121.8461538461538460.018.153846153846160.0

Sub Motif Members

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