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NonredundantMotifs:53: Difference between revisions

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|PWM=P0;A;C;G;T!1;569.0517601466087;188.14145917585756;623.7866189871102;795.0201616904222!2;21.34523334711168;2039.2802677428863;72.51534939684747;42.859149513156964!3;21.23207362254708;2082.1427525028544;4.668306923673342;67.95686695092692!4;1151.3753212374045;59.83140338518785;16.05629484668137;948.7369805307262!5;359.9680521061649;25.07088701106914;64.51215220633966;1726.4489086764295!6;1710.1112546121865;20.31018622486939;122.1193310802891;323.4592280826575!7;224.12515394003373;62.20497181500503;55.315825405325086;1834.3540488396375!8;1493.750389248867;76.6465672194731;58.107279479370575;547.4957640522936!9;718.186677689285;56.742667620263134;128.18493280988855;1272.8857218805626!10;116.44076309895229;4.900077101293365;2040.6195802775285;14.03957952222673!11;56.930773750973685;9.826348039550682;2073.5274803848465;35.71539782463086!12;384.2234353655347;390.23291669976885;1077.180694792354;324.36295314234144!13;617.3161698292167;1236.6831617709977;176.30258777065475;145.69808062912855!14;1544.2044967519807;63.96108848186516;266.5608904415209;301.2735243246348!15;319.9319203818095;266.9500855877998;450.2744018142869;1138.8435922161052
|PWM=P0;A;C;G;T!1;569.0517601466087;188.14145917585756;623.7866189871102;795.0201616904222!2;21.34523334711168;2039.2802677428863;72.51534939684747;42.859149513156964!3;21.23207362254708;2082.1427525028544;4.668306923673342;67.95686695092692!4;1151.3753212374045;59.83140338518785;16.05629484668137;948.7369805307262!5;359.9680521061649;25.07088701106914;64.51215220633966;1726.4489086764295!6;1710.1112546121865;20.31018622486939;122.1193310802891;323.4592280826575!7;224.12515394003373;62.20497181500503;55.315825405325086;1834.3540488396375!8;1493.750389248867;76.6465672194731;58.107279479370575;547.4957640522936!9;718.186677689285;56.742667620263134;128.18493280988855;1272.8857218805626!10;116.44076309895229;4.900077101293365;2040.6195802775285;14.03957952222673!11;56.930773750973685;9.826348039550682;2073.5274803848465;35.71539782463086!12;384.2234353655347;390.23291669976885;1077.180694792354;324.36295314234144!13;617.3161698292167;1236.6831617709977;176.30258777065475;145.69808062912855!14;1544.2044967519807;63.96108848186516;266.5608904415209;301.2735243246348!15;319.9319203818095;266.9500855877998;450.2744018142869;1138.8435922161052
|entrez_gene_id=6722
|entrez_gene_id=6722
|motif_cluster_2013_march_motif_members= /JASPAR:MA0083.1;SRF /SWISSREGULON:SRF.p3 /HOMER:SRF_PUER-Srf-ChIP-Seq /UNIPROBE:Tbp_secondary;SCI09~Srf_primary;SCI09 /HOCOMOCO:SRF_do
|motif_cluster_2013_march_motif_members= /HOCOMOCO:SRF_do /HOMER:SRF_PUER-Srf-ChIP-Seq /JASPAR:MA0083.1;SRF /SWISSREGULON:SRF.p3 /UNIPROBE:Srf_primary;SCI09~Tbp_secondary;SCI09
|name=known53
|name=non-redundant53
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=SRF_do
|representative_motif_id=SRF_do
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant53
  • db :HOCOMOCO
  • Id :SRF_do
  • name  :
  • score :0.13333556935218455
  • External refs:
EntrezGene:6722
UniProt:6722

  • Internal refs:
EntrezGene:6722


Motif matrix
P0ACGT
1569.0517601466087188.14145917585756623.7866189871102795.0201616904222
221.345233347111682039.280267742886372.5153493968474742.859149513156964
321.232073622547082082.14275250285444.66830692367334267.95686695092692
41151.375321237404559.8314033851878516.05629484668137948.7369805307262
5359.968052106164925.0708870110691464.512152206339661726.4489086764295
61710.111254612186520.31018622486939122.1193310802891323.4592280826575
7224.1251539400337362.2049718150050355.3158254053250861834.3540488396375
81493.75038924886776.646567219473158.107279479370575547.4957640522936
9718.18667768928556.742667620263134128.184932809888551272.8857218805626
10116.440763098952294.9000771012933652040.619580277528514.03957952222673
1156.9307737509736859.8263480395506822073.527480384846535.71539782463086
12384.2234353655347390.232916699768851077.180694792354324.36295314234144
13617.31616982921671236.6831617709977176.30258777065475145.69808062912855
141544.204496751980763.96108848186516266.5608904415209301.2735243246348
15319.9319203818095266.9500855877998450.27440181428691138.8435922161052

Sub Motif Members

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