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NonredundantMotifs:51: Difference between revisions

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|PWM=PO;A;C;G;T!1;37.711504;545.640392;68.411948;131.319303!2;307.79035;447.443043;27.849754;0!3;781.753104999999;0;1.330042;0!4;783.083146999999;0;0;0!5;0;0;0;783.083146999999!6;1.495057;780.088571999999;0;1.499518!7;594.020252;85.668461;44.560901;58.833533!8;55.42408;471.53301;196.953489;59.172568!9;339.399882;233.557475;9.343329;200.782461!10;118.007463;88.737423;550.590646;25.747615
|PWM=PO;A;C;G;T!1;37.711504;545.640392;68.411948;131.319303!2;307.79035;447.443043;27.849754;0!3;781.753104999999;0;1.330042;0!4;783.083146999999;0;0;0!5;0;0;0;783.083146999999!6;1.495057;780.088571999999;0;1.499518!7;594.020252;85.668461;44.560901;58.833533!8;55.42408;471.53301;196.953489;59.172568!9;339.399882;233.557475;9.343329;200.782461!10;118.007463;88.737423;550.590646;25.747615
|entrez_gene_id=GFI1
|entrez_gene_id=GFI1
|motif_cluster_2013_march_motif_members= /JASPAR:MA0038.1;Gfi /SWISSREGULON:GFI1.p2~GFI1B.p2 /HOMER:GFI1B_HPC7-Gfi1b-ChIP-Seq /UNIPROBE:Hdx_3845.3;CELL08 /HOCOMOCO:GFI1_f1~GFI1B_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:GFI1_f1~GFI1B_f1 /HOMER:GFI1B_HPC7-Gfi1b-ChIP-Seq /JASPAR:MA0038.1;Gfi /SWISSREGULON:GFI1.p2~GFI1B.p2 /UNIPROBE:Hdx_3845.3;CELL08
|name=known51
|name=non-redundant51
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=GFI1.p2
|representative_motif_id=GFI1.p2
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant51
  • db :SWISSREGULON
  • Id :GFI1.p2
  • name :GFI1
  • score :0.27937420369664345
  • External refs:
EntrezGene:GFI1
UniProt:GFI1

  • Internal refs:
EntrezGene:GFI1


Motif matrix
POACGT
137.711504545.64039268.411948131.319303
2307.79035447.44304327.8497540
3781.75310499999901.3300420
4783.083146999999000
5000783.083146999999
61.495057780.08857199999901.499518
7594.02025285.66846144.56090158.833533
855.42408471.53301196.95348959.172568
9339.399882233.5574759.343329200.782461
10118.00746388.737423550.59064625.747615

Sub Motif Members