NonredundantMotifs:50: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1; | |PWM=P0;A;C;G;T!1;1.505263157894738;0.5789473684210523;6.4842105263157865;2.431578947368417!2;0.0;9.147368421052631;1.0421052631578953;0.8105263157894738!3;0.0;0.0;0.0;11.0!4;9.957894736842107;0.0;1.0421052631578953;0.0!5;0.0;1.0421052631578953;0.0;9.957894736842107!6;2.0842105263157857;0.0;0.0;8.915789473684214!7;1.0421052631578953;0.0;0.0;9.957894736842107!8;4.168421052631583;0.0;0.0;6.831578947368428!9;1.0421052631578953;0.0;0.0;9.957894736842107!10;9.957894736842107;0.0;1.0421052631578953;0.0!11;0.9263157894736845;0.0;7.063157894736845;3.010526315789476!12;3.4736842105263213;4.284210526315786;2.663157894736845;0.5789473684210523 | ||
|entrez_gene_id= | |entrez_gene_id=4209 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0052.1;MEF2A /SWISSREGULON: | |motif_cluster_2013_march_motif_members= /HOCOMOCO:MEF2C_f1~MEF2D_f1~MEF2A_f1 /HOMER:MEF2A_HL1-Mef2a.biotin-ChIP-Seq/ /JASPAR:MA0052.1;MEF2A /SWISSREGULON:MEF2(A,B,C,D).p2~HOX(A4,D4).p2 | ||
|name= | |name=non-redundant50 | ||
|representative_motif_db= | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id= | |representative_motif_id=MEF2D_f1 | ||
|representative_motif_name= | |representative_motif_name= | ||
|score=0. | |score=0.1104659323757388 | ||
|uniprot_entry_name= | |uniprot_entry_name=MEF2D_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Revision as of 16:47, 29 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant50
- db :HOCOMOCO
- Id :MEF2D_f1
- name :
- score :0.1104659323757388
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
